RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 DDB1Q16531 1140 aa9.14□□□□□ -0.95
SCN9A-202ENST00000409435 ZNF219Q9P2Y4 722 aaPredicted RBP9.14□□□□□ -0.95
SCN9A-202ENST00000409435 EIF4G3O43432 1585 aaKnown RBP9.13□□□□□ -0.95
SCN9A-202ENST00000409435 RFC4P35249 363 aa9.13□□□□□ -0.95
SCN9A-202ENST00000409435 NOP58Q9Y2X3 529 aaKnown RBP9.13□□□□□ -0.95
SCN9A-202ENST00000409435 KTN1Q86UP2 1357 aaKnown RBP9.13□□□□□ -0.95
SCN9A-202ENST00000409435 FBXO41Q8TF61 875 aa9.13□□□□□ -0.95
SCN9A-202ENST00000409435 TOP2BQ02880 1626 aa9.13□□□□□ -0.95
SCN9A-202ENST00000409435 SAMD1Q6SPF0 538 aaPredicted RBP9.13□□□□□ -0.95
SCN9A-202ENST00000409435 CNKSR2Q8WXI2 1034 aa9.13□□□□□ -0.95
SCN9A-202ENST00000409435 GPATCH3Q96I76 525 aa9.13□□□□□ -0.95
SCN9A-202ENST00000409435 SLC4A10Q6U841 1118 aa9.12□□□□□ -0.95
SCN9A-202ENST00000409435 ZNF622Q969S3 477 aaKnown RBP eCLIP9.12□□□□□ -0.956e-9■■■□□ 19.2
SCN9A-202ENST00000409435 ZMYM3Q14202 1370 aa9.12□□□□□ -0.95
SCN9A-202ENST00000409435 TCERG1O14776 1098 aaKnown RBP9.12□□□□□ -0.95
SCN9A-202ENST00000409435 ABCC2Q92887 1545 aa9.12□□□□□ -0.95
SCN9A-202ENST00000409435 STARD3NLO95772 234 aa9.12□□□□□ -0.95
SCN9A-202ENST00000409435 SMC4Q9NTJ3 1288 aa9.12□□□□□ -0.95
SCN9A-202ENST00000409435 ZNF518AQ6AHZ1 1483 aa9.12□□□□□ -0.95
SCN9A-202ENST00000409435 IPO8O15397 1037 aaKnown RBP9.12□□□□□ -0.95
SCN9A-202ENST00000409435 LMOD1P29536 600 aaPredicted RBP9.11□□□□□ -0.95
SCN9A-202ENST00000409435 RSPH6AQ9H0K4 717 aa9.11□□□□□ -0.95
SCN9A-202ENST00000409435 TOMM22Q9NS69 142 aa9.11□□□□□ -0.95
SCN9A-202ENST00000409435 PARP3Q9Y6F1 533 aa9.11□□□□□ -0.95
SCN9A-202ENST00000409435 KDM6BO15054 1643 aa9.11□□□□□ -0.95
SCN9A-202ENST00000409435 RUSC2Q8N2Y8 1516 aa9.11□□□□□ -0.95
SCN9A-202ENST00000409435 ERBINQ96RT1 1412 aa9.11□□□□□ -0.95
SCN9A-202ENST00000409435 DIAPH1O60610 1272 aaKnown RBP9.11□□□□□ -0.95
SCN9A-202ENST00000409435 TMOD2Q9NZR1 351 aa9.1□□□□□ -0.95
SCN9A-202ENST00000409435 SLAIN2Q9P270 581 aa9.1□□□□□ -0.95
SCN9A-202ENST00000409435 KIF21BO75037 1637 aa9.1□□□□□ -0.95
SCN9A-202ENST00000409435 ST20-MTHFSA0A0A6YYL1 179 aa9.1□□□□□ -0.95
SCN9A-202ENST00000409435 MTHFSP49914 203 aa9.1□□□□□ -0.95
SCN9A-202ENST00000409435 RIC3Q7Z5B4 369 aa9.1□□□□□ -0.95
SCN9A-202ENST00000409435 A0A0U1RQG5 324 aaPredicted RBP9.1□□□□□ -0.95
SCN9A-202ENST00000409435 AIDAQ96BJ3 306 aa9.1□□□□□ -0.95
SCN9A-202ENST00000409435 MPRIPQ6WCQ1 1025 aa9.09□□□□□ -0.95
SCN9A-202ENST00000409435 BCL2L13Q9BXK5 485 aa9.09□□□□□ -0.95
SCN9A-202ENST00000409435 RRP7AQ9Y3A4 280 aaKnown RBP9.09□□□□□ -0.95
SCN9A-202ENST00000409435 ATP10AO60312 1499 aa9.09□□□□□ -0.95
SCN9A-202ENST00000409435 RPGRQ92834 1020 aaKnown RBP9.09□□□□□ -0.95
SCN9A-202ENST00000409435 CCDC141Q6ZP82 1450 aa9.09□□□□□ -0.95
SCN9A-202ENST00000409435 CFAP70Q5T0N1 1121 aa9.09□□□□□ -0.95
SCN9A-202ENST00000409435 PKNOX2Q96KN3 472 aa9.09□□□□□ -0.95
SCN9A-202ENST00000409435 KCNA6P17658 529 aa9.09□□□□□ -0.95
SCN9A-202ENST00000409435 NUDT16Q96DE0 195 aaKnown RBP9.09□□□□□ -0.95
SCN9A-202ENST00000409435 ST5P78524 1137 aa9.08□□□□□ -0.96
SCN9A-202ENST00000409435 C9orf78Q9NZ63 289 aaPredicted RBP9.08□□□□□ -0.96
SCN9A-202ENST00000409435 SMARCC1Q92922 1105 aaPredicted RBP9.08□□□□□ -0.96
SCN9A-202ENST00000409435 ZNF530Q6P9A1 599 aaPredicted RBP9.08□□□□□ -0.96
SCN9A-202ENST00000409435 GAS2L2Q8NHY3 880 aa9.08□□□□□ -0.96
SCN9A-202ENST00000409435 AIMP1Q12904 312 aaKnown RBP9.08□□□□□ -0.96
SCN9A-202ENST00000409435 IDI1Q13907 227 aa9.08□□□□□ -0.96
SCN9A-202ENST00000409435 GOLGA6L1Q8N7Z2 621 aa9.08□□□□□ -0.96
SCN9A-202ENST00000409435 ACSBG1Q96GR2 724 aa9.07□□□□□ -0.96
SCN9A-202ENST00000409435 NF2P35240 595 aa9.07□□□□□ -0.96
SCN9A-202ENST00000409435 DHX29Q7Z478 1369 aaKnown RBP9.07□□□□□ -0.96
SCN9A-202ENST00000409435 A0A087WZG4 1122 aa9.06□□□□□ -0.96
SCN9A-202ENST00000409435 MARCH6O60337 910 aa9.06□□□□□ -0.96
SCN9A-202ENST00000409435 CHRNA2Q15822 529 aa9.06□□□□□ -0.96
SCN9A-202ENST00000409435 CABP1Q9NZU7 370 aa9.06□□□□□ -0.96
SCN9A-202ENST00000409435 CDCA7Q9BWT1 371 aaPredicted RBP9.06□□□□□ -0.96
SCN9A-202ENST00000409435 EHBP1L1Q8N3D4 1523 aa9.06□□□□□ -0.96
SCN9A-202ENST00000409435 CCDC61Q9Y6R9 512 aa9.06□□□□□ -0.96
SCN9A-202ENST00000409435 ANKRD30BQ9BXX2 1392 aa9.06□□□□□ -0.96
SCN9A-202ENST00000409435 WWC3Q9ULE0 1092 aa9.06□□□□□ -0.96
SCN9A-202ENST00000409435 FAM98CQ17RN3 349 aaKnown RBP9.06□□□□□ -0.96
SCN9A-202ENST00000409435 WAPLQ7Z5K2 1190 aa9.06□□□□□ -0.96
SCN9A-202ENST00000409435 GGNBP2Q9H3C7 697 aa9.05□□□□□ -0.96
SCN9A-202ENST00000409435 PLCB2Q00722 1185 aa9.05□□□□□ -0.96
SCN9A-202ENST00000409435 NECTIN2Q92692 538 aa9.05□□□□□ -0.96
SCN9A-202ENST00000409435 CDK13Q14004 1512 aaKnown RBP9.05□□□□□ -0.96
SCN9A-202ENST00000409435 PLCH2O75038 1416 aa9.05□□□□□ -0.96
SCN9A-202ENST00000409435 GNL2Q13823 731 aaKnown RBP9.05□□□□□ -0.96
SCN9A-202ENST00000409435 LRRFIP1Q32MZ4 808 aaKnown RBP9.05□□□□□ -0.96
SCN9A-202ENST00000409435 TSPYL4Q9UJ04 414 aa9.05□□□□□ -0.96
SCN9A-202ENST00000409435 TIMELESSQ9UNS1 1208 aa9.05□□□□□ -0.96
SCN9A-202ENST00000409435 L3MBTL2Q969R5 705 aa9.05□□□□□ -0.96
SCN9A-202ENST00000409435 BTG4Q9NY30 223 aa9.05□□□□□ -0.96
SCN9A-202ENST00000409435 PLIN1O60240 522 aa9.05□□□□□ -0.96
SCN9A-202ENST00000409435 JDP2Q8WYK2 163 aa9.05□□□□□ -0.96
SCN9A-202ENST00000409435 PTPRKQ15262 1439 aa9.04□□□□□ -0.96
SCN9A-202ENST00000409435 A2MP01023 1474 aa9.04□□□□□ -0.96
SCN9A-202ENST00000409435 APBB1O00213 710 aa9.04□□□□□ -0.96
SCN9A-202ENST00000409435 CCDC27Q2M243 656 aa9.04□□□□□ -0.96
SCN9A-202ENST00000409435 ARID3AQ99856 593 aa9.04□□□□□ -0.96
SCN9A-202ENST00000409435 GNL3LQ9NVN8 582 aaKnown RBP9.04□□□□□ -0.96
SCN9A-202ENST00000409435 SENP3-EIF4A1A0A087X0R7 540 aa9.03□□□□□ -0.96
SCN9A-202ENST00000409435 ABCC10Q5T3U5 1492 aa9.03□□□□□ -0.96
SCN9A-202ENST00000409435 PEG3Q9GZU2 1588 aa9.03□□□□□ -0.96
SCN9A-202ENST00000409435 TSPOAP1O95153 1857 aa9.03□□□□□ -0.96
SCN9A-202ENST00000409435 DHX16O60231 1041 aaKnown RBP9.03□□□□□ -0.96
SCN9A-202ENST00000409435 FGD6Q6ZV73 1430 aa9.03□□□□□ -0.96
SCN9A-202ENST00000409435 HMMRO75330 724 aa9.03□□□□□ -0.96
SCN9A-202ENST00000409435 HSPA5P11021 654 aaKnown RBP9.03□□□□□ -0.96
SCN9A-202ENST00000409435 IKQ13123 557 aaPredicted RBP9.02□□□□□ -0.96
SCN9A-202ENST00000409435 RAB3GAP2Q9H2M9 1393 aa9.02□□□□□ -0.97
SCN9A-202ENST00000409435 KIAA1211Q6ZU35 1233 aa9.02□□□□□ -0.97
SCN9A-202ENST00000409435 ZFYVE16Q7Z3T8 1539 aa9.02□□□□□ -0.97
SCN9A-202ENST00000409435 WWC1Q8IX03 1113 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 133 ms