RNA–Protein interactions for RNA: ENST00000409357.5

NIF3L1-204, Transcript of NGG1 interacting factor 3 like 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene NIF3L1, Length 1,679 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIF3L1-204ENST00000409357 HIRIP3Q9BW71 556 aaPredicted RBP14.02□□□□□ -0.16
NIF3L1-204ENST00000409357 RIMS2Q9UQ26 1411 aa14.02□□□□□ -0.17
NIF3L1-204ENST00000409357 LRRC7Q96NW7 1537 aa14.01□□□□□ -0.17
NIF3L1-204ENST00000409357 CCDC7Q96M83 1385 aa14.01□□□□□ -0.17
NIF3L1-204ENST00000409357 CHGAP10645 457 aaKnown RBP14.01□□□□□ -0.17
NIF3L1-204ENST00000409357 EIF4G2P78344 907 aaKnown RBP eCLIP14.01□□□□□ -0.17
NIF3L1-204ENST00000409357 NFKBIBQ15653 356 aa14.01□□□□□ -0.17
NIF3L1-204ENST00000409357 NUTM2DQ5VT03 806 aaPredicted RBP14.01□□□□□ -0.17
NIF3L1-204ENST00000409357 SLC26A8Q96RN1 970 aa14.01□□□□□ -0.17
NIF3L1-204ENST00000409357 MRS2Q9HD23 443 aa14.01□□□□□ -0.17
NIF3L1-204ENST00000409357 TRPM2O94759 1503 aa14□□□□□ -0.17
NIF3L1-204ENST00000409357 RRP9O43818 475 aaKnown RBP14□□□□□ -0.17
NIF3L1-204ENST00000409357 UBAP1LF5GYI3 381 aa13.99□□□□□ -0.17
NIF3L1-204ENST00000409357 HSPA5P11021 654 aaKnown RBP13.99□□□□□ -0.17
NIF3L1-204ENST00000409357 CCDC184Q52MB2 194 aa13.98□□□□□ -0.17
NIF3L1-204ENST00000409357 FRAT1Q92837 279 aaPredicted RBP13.98□□□□□ -0.17
NIF3L1-204ENST00000409357 LAS1LQ9Y4W2 734 aaKnown RBP13.98□□□□□ -0.17
NIF3L1-204ENST00000409357 PLEKHG1Q9ULL1 1385 aa13.96□□□□□ -0.17
NIF3L1-204ENST00000409357 ZMYND15Q9H091 742 aa13.96□□□□□ -0.17
NIF3L1-204ENST00000409357 NRXN3Q9Y4C0 1643 aa13.96□□□□□ -0.18
NIF3L1-204ENST00000409357 NWD1Q149M9 1564 aa13.96□□□□□ -0.18
NIF3L1-204ENST00000409357 KIF1BO60333 1816 aa13.95□□□□□ -0.18
NIF3L1-204ENST00000409357 CHD2O14647 1828 aaKnown RBP13.95□□□□□ -0.18
NIF3L1-204ENST00000409357 ADAMTS13Q76LX8 1427 aa13.95□□□□□ -0.18
NIF3L1-204ENST00000409357 AMER1Q5JTC6 1135 aaPredicted RBP13.95□□□□□ -0.18
NIF3L1-204ENST00000409357 FAM9BQ8IZU0 186 aa13.95□□□□□ -0.18
NIF3L1-204ENST00000409357 ATF5Q9Y2D1 282 aaPredicted RBP13.95□□□□□ -0.18
NIF3L1-204ENST00000409357 RBM33Q96EV2 1170 aaKnown RBP13.94□□□□□ -0.18
NIF3L1-204ENST00000409357 NEXMIFQ5QGS0 1516 aa13.94□□□□□ -0.18
NIF3L1-204ENST00000409357 PIP4K2BP78356 416 aa13.92□□□□□ -0.18
NIF3L1-204ENST00000409357 SPATA31E1Q6ZUB1 1445 aa13.91□□□□□ -0.18
NIF3L1-204ENST00000409357 L1TD1Q5T7N2 865 aaKnown RBP13.91□□□□□ -0.18
NIF3L1-204ENST00000409357 TMEM94Q12767 1356 aa13.9□□□□□ -0.18
NIF3L1-204ENST00000409357 KCNA6P17658 529 aa13.9□□□□□ -0.18
NIF3L1-204ENST00000409357 ZNF326Q5BKZ1 582 aaKnown RBP13.9□□□□□ -0.18
NIF3L1-204ENST00000409357 NKTRP30414 1462 aaKnown RBP13.9□□□□□ -0.18
NIF3L1-204ENST00000409357 DIP2AQ14689 1571 aa13.9□□□□□ -0.19
NIF3L1-204ENST00000409357 SETBP1Q9Y6X0 1596 aa13.9□□□□□ -0.19
NIF3L1-204ENST00000409357 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.89□□□□□ -0.19
NIF3L1-204ENST00000409357 KTN1Q86UP2 1357 aaKnown RBP13.89□□□□□ -0.19
NIF3L1-204ENST00000409357 CENPJQ9HC77 1338 aaPredicted RBP13.89□□□□□ -0.19
NIF3L1-204ENST00000409357 RRP1P56182 461 aaKnown RBP13.88□□□□□ -0.19
NIF3L1-204ENST00000409357 PDE3BQ13370 1112 aa13.88□□□□□ -0.19
NIF3L1-204ENST00000409357 MPHOSPH9Q99550 1183 aa13.88□□□□□ -0.19
NIF3L1-204ENST00000409357 INSRP06213 1382 aa13.88□□□□□ -0.19
NIF3L1-204ENST00000409357 PPLO60437 1756 aa13.88□□□□□ -0.19
NIF3L1-204ENST00000409357 PTPRUQ92729 1446 aa13.88□□□□□ -0.19
NIF3L1-204ENST00000409357 TOM1O60784 492 aa13.88□□□□□ -0.19
NIF3L1-204ENST00000409357 LRPPRCP42704 1394 aaKnown RBP13.87□□□□□ -0.19
NIF3L1-204ENST00000409357 HDGFP51858 240 aaKnown RBP13.87□□□□□ -0.19
NIF3L1-204ENST00000409357 SETD1AO15047 1707 aaKnown RBP13.87□□□□□ -0.19
NIF3L1-204ENST00000409357 HSPA1LP34931 641 aa13.86□□□□□ -0.19
NIF3L1-204ENST00000409357 NPM2Q86SE8 214 aaKnown RBP13.86□□□□□ -0.19
NIF3L1-204ENST00000409357 VSIG10Q8N0Z9 540 aa13.86□□□□□ -0.19
NIF3L1-204ENST00000409357 TBX22Q9Y458 520 aa13.86□□□□□ -0.19
NIF3L1-204ENST00000409357 XRN1Q8IZH2 1706 aaKnown RBP13.86□□□□□ -0.19
NIF3L1-204ENST00000409357 CLCN1P35523 988 aa13.85□□□□□ -0.19
NIF3L1-204ENST00000409357 HSP90AA2PQ14568 343 aaPredicted RBP13.85□□□□□ -0.19
NIF3L1-204ENST00000409357 PROSER2Q86WR7 435 aaPredicted RBP13.85□□□□□ -0.19
NIF3L1-204ENST00000409357 METP08581 1390 aa13.84□□□□□ -0.19
NIF3L1-204ENST00000409357 IFT172Q9UG01 1749 aa13.84□□□□□ -0.19
NIF3L1-204ENST00000409357 CCDC144AA2RUR9 1427 aa13.84□□□□□ -0.19
NIF3L1-204ENST00000409357 DCAF11Q8TEB1 546 aa13.84□□□□□ -0.19
NIF3L1-204ENST00000409357 DCAF8L1A6NGE4 600 aa13.83□□□□□ -0.2
NIF3L1-204ENST00000409357 PODXL2Q9NZ53 605 aa13.83□□□□□ -0.2
NIF3L1-204ENST00000409357 HSP90AA1P07900 732 aaKnown RBP13.82□□□□□ -0.2
NIF3L1-204ENST00000409357 PNISRQ8TF01 805 aaKnown RBP13.82□□□□□ -0.2
NIF3L1-204ENST00000409357 ROBO1Q9Y6N7 1651 aa13.82□□□□□ -0.2
NIF3L1-204ENST00000409357 ROCK2O75116 1388 aaKnown RBP13.81□□□□□ -0.2
NIF3L1-204ENST00000409357 PIK3R4Q99570 1358 aa13.81□□□□□ -0.2
NIF3L1-204ENST00000409357 KIF7Q2M1P5 1343 aa13.81□□□□□ -0.2
NIF3L1-204ENST00000409357 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.81□□□□□ -0.2
NIF3L1-204ENST00000409357 RRAGDQ9NQL2 400 aaPredicted RBP13.8□□□□□ -0.2
NIF3L1-204ENST00000409357 AMOTL2Q9Y2J4 779 aa13.8□□□□□ -0.2
NIF3L1-204ENST00000409357 RGL3Q3MIN7 710 aa13.79□□□□□ -0.2
NIF3L1-204ENST00000409357 EXOC6Q8TAG9 804 aa13.79□□□□□ -0.2
NIF3L1-204ENST00000409357 BRD4O60885 1362 aaPredicted RBP13.78□□□□□ -0.2
NIF3L1-204ENST00000409357 MSH6P52701 1360 aa13.78□□□□□ -0.2
NIF3L1-204ENST00000409357 NALCNQ8IZF0 1738 aa13.78□□□□□ -0.2
NIF3L1-204ENST00000409357 RCAN3Q9UKA8 241 aa13.78□□□□□ -0.2
NIF3L1-204ENST00000409357 DISP3Q9P2K9 1392 aa13.77□□□□□ -0.2
NIF3L1-204ENST00000409357 ADGRF5Q8IZF2 1346 aa13.77□□□□□ -0.21
NIF3L1-204ENST00000409357 PNNQ9H307 717 aaKnown RBP13.77□□□□□ -0.21
NIF3L1-204ENST00000409357 ASXL1Q8IXJ9 1541 aa13.76□□□□□ -0.21
NIF3L1-204ENST00000409357 RPGRIP1LQ68CZ1 1315 aa13.76□□□□□ -0.21
NIF3L1-204ENST00000409357 VGFO15240 615 aaPredicted RBP13.75□□□□□ -0.21
NIF3L1-204ENST00000409357 FAM161AQ3B820 660 aa13.75□□□□□ -0.21
NIF3L1-204ENST00000409357 MED1Q15648 1581 aaPredicted RBP13.75□□□□□ -0.21
NIF3L1-204ENST00000409357 FAM135BQ49AJ0 1406 aa13.75□□□□□ -0.21
NIF3L1-204ENST00000409357 FRAT2O75474 233 aaPredicted RBP13.75□□□□□ -0.21
NIF3L1-204ENST00000409357 C14orf37Q86TY3 774 aa13.75□□□□□ -0.21
NIF3L1-204ENST00000409357 ANKRD30BQ9BXX2 1392 aa13.74□□□□□ -0.21
NIF3L1-204ENST00000409357 KDM2BQ8NHM5 1336 aa13.74□□□□□ -0.21
NIF3L1-204ENST00000409357 TPM2P07951 284 aa13.74□□□□□ -0.21
NIF3L1-204ENST00000409357 CALD1Q05682 793 aaKnown RBP13.74□□□□□ -0.21
NIF3L1-204ENST00000409357 ISY1Q9ULR0 285 aaKnown RBP13.74□□□□□ -0.21
NIF3L1-204ENST00000409357 NCOA3Q9Y6Q9 1424 aa13.74□□□□□ -0.21
NIF3L1-204ENST00000409357 ROBO2Q9HCK4 1378 aa13.74□□□□□ -0.21
NIF3L1-204ENST00000409357 PDCL3Q9H2J4 239 aa13.73□□□□□ -0.21
NIF3L1-204ENST00000409357 SLAIN2Q9P270 581 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms