RNA–Protein interactions for RNA: ENST00000400060.8

PTPRM-203, Transcript of protein tyrosine phosphatase, receptor type M, humanhuman

TSL 5 BASIC

Gene PTPRM, Length 5,030 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRM-203ENST00000400060 SNX21Q969T3 373 aa12.03□□□□□ -0.48
PTPRM-203ENST00000400060 AEBP1Q8IUX7 1158 aa12.03□□□□□ -0.48
PTPRM-203ENST00000400060 TPRNQ4KMQ1 711 aa12.02□□□□□ -0.48
PTPRM-203ENST00000400060 EFCAB2Q5VUJ9 269 aa12.02□□□□□ -0.48
PTPRM-203ENST00000400060 CCDC70Q6NSX1 233 aa12.02□□□□□ -0.48
PTPRM-203ENST00000400060 CFTRP13569 1480 aa12.02□□□□□ -0.48
PTPRM-203ENST00000400060 BECN2A8MW95 431 aa12.02□□□□□ -0.48
PTPRM-203ENST00000400060 RBM28Q9NW13 759 aaKnown RBP12.02□□□□□ -0.48
PTPRM-203ENST00000400060 NEMFO60524 1076 aa12.02□□□□□ -0.49
PTPRM-203ENST00000400060 PLEKHH1Q9ULM0 1364 aa12.02□□□□□ -0.49
PTPRM-203ENST00000400060 ROCK1Q13464 1354 aa12.01□□□□□ -0.49
PTPRM-203ENST00000400060 MORC1Q86VD1 984 aa12.01□□□□□ -0.49
PTPRM-203ENST00000400060 CASKIN1Q8WXD9 1431 aa12.01□□□□□ -0.49
PTPRM-203ENST00000400060 ERICH4A6NGS2 130 aa12.01□□□□□ -0.49
PTPRM-203ENST00000400060 IVLP07476 585 aa12.01□□□□□ -0.49
PTPRM-203ENST00000400060 RNF214Q8ND24 703 aa12.01□□□□□ -0.49
PTPRM-203ENST00000400060 PAXIP1Q6ZW49 1069 aaPredicted RBP12.01□□□□□ -0.49
PTPRM-203ENST00000400060 GNL2Q13823 731 aaKnown RBP12□□□□□ -0.49
PTPRM-203ENST00000400060 LRSAM1Q6UWE0 723 aa12□□□□□ -0.49
PTPRM-203ENST00000400060 FILIP1Q7Z7B0 1213 aa12□□□□□ -0.49
PTPRM-203ENST00000400060 GAPVD1Q14C86 1478 aa12□□□□□ -0.49
PTPRM-203ENST00000400060 TOP2BQ02880 1626 aa12□□□□□ -0.49
PTPRM-203ENST00000400060 CCDC192P0DO97 292 aa12□□□□□ -0.49
PTPRM-203ENST00000400060 ZNF622Q969S3 477 aaKnown RBP eCLIP12□□□□□ -0.49
PTPRM-203ENST00000400060 GIMAP7Q8NHV1 300 aa12□□□□□ -0.49
PTPRM-203ENST00000400060 LRPPRCP42704 1394 aaKnown RBP11.99□□□□□ -0.49
PTPRM-203ENST00000400060 TUBB4AP04350 444 aa11.99□□□□□ -0.49
PTPRM-203ENST00000400060 JPH4Q96JJ6 628 aa11.99□□□□□ -0.49
PTPRM-203ENST00000400060 RASSF4Q9H2L5 321 aa11.99□□□□□ -0.49
PTPRM-203ENST00000400060 ST20-MTHFSA0A0A6YYL1 179 aa11.99□□□□□ -0.49
PTPRM-203ENST00000400060 PATL2C9JE40 543 aaKnown RBP11.99□□□□□ -0.49
PTPRM-203ENST00000400060 HOMER1Q86YM7 354 aa11.99□□□□□ -0.49
PTPRM-203ENST00000400060 GCC1Q96CN9 775 aa11.99□□□□□ -0.49
PTPRM-203ENST00000400060 CDCA7LQ96GN5 454 aa11.99□□□□□ -0.49
PTPRM-203ENST00000400060 NOLC1Q14978 699 aaKnown RBP eCLIP11.99□□□□□ -0.49
PTPRM-203ENST00000400060 TMCO3Q6UWJ1 677 aa11.99□□□□□ -0.49
PTPRM-203ENST00000400060 CCDC91Q7Z6B0 441 aa11.99□□□□□ -0.49
PTPRM-203ENST00000400060 ERLIN1O75477 346 aa11.98□□□□□ -0.49
PTPRM-203ENST00000400060 DDX11Q96FC9 970 aa11.98□□□□□ -0.49
PTPRM-203ENST00000400060 EFCAB5A4FU69 1503 aa11.98□□□□□ -0.49
PTPRM-203ENST00000400060 SLC26A8Q96RN1 970 aa11.98□□□□□ -0.49
PTPRM-203ENST00000400060 NAT10Q9H0A0 1025 aaKnown RBP11.98□□□□□ -0.49
PTPRM-203ENST00000400060 SCAPERQ9BY12 1400 aa11.98□□□□□ -0.49
PTPRM-203ENST00000400060 NKTRP30414 1462 aaKnown RBP11.98□□□□□ -0.49
PTPRM-203ENST00000400060 ANKRD45Q5TZF3 282 aa11.98□□□□□ -0.49
PTPRM-203ENST00000400060 PANK3Q9H999 370 aa11.98□□□□□ -0.49
PTPRM-203ENST00000400060 WDR33Q9C0J8 1336 aaKnown RBP11.98□□□□□ -0.49
PTPRM-203ENST00000400060 SMC5Q8IY18 1101 aa11.97□□□□□ -0.49
PTPRM-203ENST00000400060 LMOD3Q0VAK6 560 aa11.97□□□□□ -0.49
PTPRM-203ENST00000400060 ZNF397Q8NF99 534 aaPredicted RBP11.97□□□□□ -0.49
PTPRM-203ENST00000400060 V9GYY5 206 aaPredicted RBP11.97□□□□□ -0.49
PTPRM-203ENST00000400060 ZSCAN23Q3MJ62 389 aa11.97□□□□□ -0.49
PTPRM-203ENST00000400060 RAD54L2Q9Y4B4 1467 aa11.97□□□□□ -0.49
PTPRM-203ENST00000400060 CCDC34Q96HJ3 373 aa11.97□□□□□ -0.49
PTPRM-203ENST00000400060 POLA1P09884 1462 aaPredicted RBP11.96□□□□□ -0.49
PTPRM-203ENST00000400060 RAB3GAP1Q15042 981 aa11.96□□□□□ -0.49
PTPRM-203ENST00000400060 EFCC1Q9HA90 598 aa11.96□□□□□ -0.49
PTPRM-203ENST00000400060 H0YHG0 523 aa11.96□□□□□ -0.5
PTPRM-203ENST00000400060 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.96□□□□□ -0.5
PTPRM-203ENST00000400060 HMGXB3Q12766 1538 aa11.96□□□□□ -0.5
PTPRM-203ENST00000400060 HSP90B1P14625 803 aaKnown RBP11.96□□□□□ -0.5
PTPRM-203ENST00000400060 CCDC183Q5T5S1 534 aa11.96□□□□□ -0.5
PTPRM-203ENST00000400060 IBTKQ9P2D0 1353 aaPredicted RBP11.95□□□□□ -0.5
PTPRM-203ENST00000400060 HNRNPMP52272 730 aaKnown RBP eCLIP11.95□□□□□ -0.5
PTPRM-203ENST00000400060 ZNF445P59923 1031 aa11.95□□□□□ -0.5
PTPRM-203ENST00000400060 CCDC171Q6TFL3 1326 aa11.95□□□□□ -0.5
PTPRM-203ENST00000400060 PES1O00541 588 aaKnown RBP11.95□□□□□ -0.5
PTPRM-203ENST00000400060 SSR1P43307 286 aaKnown RBP11.95□□□□□ -0.5
PTPRM-203ENST00000400060 TRIM5Q9C035 493 aa11.95□□□□□ -0.5
PTPRM-203ENST00000400060 SPDYE4A6NLX3 237 aa11.95□□□□□ -0.5
PTPRM-203ENST00000400060 BAG4O95429 457 aaKnown RBP11.95□□□□□ -0.5
PTPRM-203ENST00000400060 CCDC146Q8IYE0 955 aa11.95□□□□□ -0.5
PTPRM-203ENST00000400060 NOC3LQ8WTT2 800 aaKnown RBP11.94□□□□□ -0.5
PTPRM-203ENST00000400060 TRIM6-TRIM34B2RNG4 842 aa11.94□□□□□ -0.5
PTPRM-203ENST00000400060 TRIM34Q9BYJ4 488 aa11.94□□□□□ -0.5
PTPRM-203ENST00000400060 GBP3Q9H0R5 595 aa11.94□□□□□ -0.5
PTPRM-203ENST00000400060 KDM2BQ8NHM5 1336 aa11.94□□□□□ -0.5
PTPRM-203ENST00000400060 EHBP1L1Q8N3D4 1523 aa11.94□□□□□ -0.5
PTPRM-203ENST00000400060 SYCE3A1L190 88 aa11.94□□□□□ -0.5
PTPRM-203ENST00000400060 SMTNL1A8MU46 457 aa11.94□□□□□ -0.5
PTPRM-203ENST00000400060 KIF18AQ8NI77 898 aa11.94□□□□□ -0.5
PTPRM-203ENST00000400060 MYCBPQ99417 103 aaPredicted RBP11.94□□□□□ -0.5
PTPRM-203ENST00000400060 A0A1B0GUL7 405 aa11.93□□□□□ -0.5
PTPRM-203ENST00000400060 SLFN5Q08AF3 891 aa11.93□□□□□ -0.5
PTPRM-203ENST00000400060 RUNDC1Q96C34 613 aa11.93□□□□□ -0.5
PTPRM-203ENST00000400060 PANK1Q8TE04 598 aa11.93□□□□□ -0.5
PTPRM-203ENST00000400060 APAF1O14727 1248 aa11.93□□□□□ -0.5
PTPRM-203ENST00000400060 VGFO15240 615 aaPredicted RBP11.93□□□□□ -0.5
PTPRM-203ENST00000400060 KIAA0754O94854 1291 aa11.93□□□□□ -0.5
PTPRM-203ENST00000400060 POTEB2H3BUK9 544 aa11.92□□□□□ -0.5
PTPRM-203ENST00000400060 PLCD3Q8N3E9 789 aa11.92□□□□□ -0.5
PTPRM-203ENST00000400060 CDR1P51861 262 aa11.92□□□□□ -0.5
PTPRM-203ENST00000400060 SYCP1Q15431 976 aa11.92□□□□□ -0.5
PTPRM-203ENST00000400060 PTPN14Q15678 1187 aa11.92□□□□□ -0.5
PTPRM-203ENST00000400060 TTC31Q49AM3 519 aaPredicted RBP11.92□□□□□ -0.5
PTPRM-203ENST00000400060 FOXD4L5Q5VV16 416 aaPredicted RBP11.92□□□□□ -0.5
PTPRM-203ENST00000400060 FOXD4L4Q8WXT5 416 aaPredicted RBP11.92□□□□□ -0.5
PTPRM-203ENST00000400060 ATAD2Q6PL18 1390 aa11.92□□□□□ -0.5
PTPRM-203ENST00000400060 TTLL5Q6EMB2 1281 aa11.92□□□□□ -0.5
PTPRM-203ENST00000400060 PIBF1Q8WXW3 757 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms