RNA–Protein interactions for RNA: ENST00000397378.7

NEDD9-203, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 3

Gene NEDD9, Length 470 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-203ENST00000397378 BAG6P46379 1132 aa14.7□□□□□ -0.06
NEDD9-203ENST00000397378 APLP2Q06481 763 aa14.7□□□□□ -0.06
NEDD9-203ENST00000397378 METP08581 1390 aa14.69□□□□□ -0.06
NEDD9-203ENST00000397378 ANKRD50Q9ULJ7 1429 aa14.68□□□□□ -0.06
NEDD9-203ENST00000397378 UNC5CLQ8IV45 518 aa14.68□□□□□ -0.06
NEDD9-203ENST00000397378 E9PCH4 1651 aa14.68□□□□□ -0.06
NEDD9-203ENST00000397378 R3HDM1Q15032 1099 aaKnown RBP14.67□□□□□ -0.06
NEDD9-203ENST00000397378 SEPT12Q8IYM1 358 aa14.67□□□□□ -0.06
NEDD9-203ENST00000397378 KRT27Q7Z3Y8 459 aa14.65□□□□□ -0.06
NEDD9-203ENST00000397378 IQGAP3Q86VI3 1631 aa14.65□□□□□ -0.06
NEDD9-203ENST00000397378 SLIT2O94813 1529 aa14.64□□□□□ -0.07
NEDD9-203ENST00000397378 NPHP3Q7Z494 1330 aa14.64□□□□□ -0.07
NEDD9-203ENST00000397378 XPCQ01831 940 aaPredicted RBP14.63□□□□□ -0.07
NEDD9-203ENST00000397378 IFFO2Q5TF58 517 aa14.63□□□□□ -0.07
NEDD9-203ENST00000397378 CCDC9Q9Y3X0 531 aaKnown RBP14.63□□□□□ -0.07
NEDD9-203ENST00000397378 A0A0G2JS52 829 aa14.62□□□□□ -0.07
NEDD9-203ENST00000397378 MYT1Q01538 1121 aa14.62□□□□□ -0.07
NEDD9-203ENST00000397378 EN1Q05925 392 aaPredicted RBP14.62□□□□□ -0.07
NEDD9-203ENST00000397378 ZNF326Q5BKZ1 582 aaKnown RBP14.62□□□□□ -0.07
NEDD9-203ENST00000397378 PXDNQ92626 1479 aa14.62□□□□□ -0.07
NEDD9-203ENST00000397378 RGPD1P0DJD0 1748 aa14.61□□□□□ -0.07
NEDD9-203ENST00000397378 ESCO1Q5FWF5 840 aa14.6□□□□□ -0.07
NEDD9-203ENST00000397378 USP32Q8NFA0 1604 aa14.59□□□□□ -0.07
NEDD9-203ENST00000397378 DCAF8L1A6NGE4 600 aa14.59□□□□□ -0.07
NEDD9-203ENST00000397378 FOXO3O43524 673 aa14.58□□□□□ -0.08
NEDD9-203ENST00000397378 FAM50AQ14320 339 aaKnown RBP14.58□□□□□ -0.08
NEDD9-203ENST00000397378 SENP3-EIF4A1A0A087X0R7 540 aa14.57□□□□□ -0.08
NEDD9-203ENST00000397378 HAP1P54257 671 aaPredicted RBP14.57□□□□□ -0.08
NEDD9-203ENST00000397378 VPS72Q15906 364 aa14.57□□□□□ -0.08
NEDD9-203ENST00000397378 PLCH1Q4KWH8 1693 aa14.57□□□□□ -0.08
NEDD9-203ENST00000397378 ROBO2Q9HCK4 1378 aa14.57□□□□□ -0.08
NEDD9-203ENST00000397378 LRPPRCP42704 1394 aaKnown RBP14.56□□□□□ -0.08
NEDD9-203ENST00000397378 ONECUT3O60422 494 aaPredicted RBP14.55□□□□□ -0.08
NEDD9-203ENST00000397378 NWD2Q9ULI1 1742 aa14.55□□□□□ -0.08
NEDD9-203ENST00000397378 ROCK1Q13464 1354 aa14.54□□□□□ -0.08
NEDD9-203ENST00000397378 TNS1Q9HBL0 1735 aaKnown RBP14.53□□□□□ -0.08
NEDD9-203ENST00000397378 PLEKHG5O94827 1062 aa14.53□□□□□ -0.08
NEDD9-203ENST00000397378 EZH2Q15910 746 aaKnown RBP14.53□□□□□ -0.08
NEDD9-203ENST00000397378 PPP1R1BQ9UD71 204 aaPredicted RBP14.53□□□□□ -0.08
NEDD9-203ENST00000397378 CDC42BPGQ6DT37 1551 aa14.52□□□□□ -0.08
NEDD9-203ENST00000397378 NEXMIFQ5QGS0 1516 aa14.52□□□□□ -0.08
NEDD9-203ENST00000397378 FAM182BQ5T319 152 aa14.52□□□□□ -0.09
NEDD9-203ENST00000397378 HFM1A2PYH4 1435 aa14.51□□□□□ -0.09
NEDD9-203ENST00000397378 NUTM2FA1L443 756 aa14.51□□□□□ -0.09
NEDD9-203ENST00000397378 FAM98CQ17RN3 349 aaKnown RBP14.51□□□□□ -0.09
NEDD9-203ENST00000397378 DISP2A7MBM2 1401 aa14.5□□□□□ -0.09
NEDD9-203ENST00000397378 SPATA31A3Q5VYP0 1347 aa14.5□□□□□ -0.09
NEDD9-203ENST00000397378 ADGRB2O60241 1585 aa14.5□□□□□ -0.09
NEDD9-203ENST00000397378 NUP155O75694 1391 aa14.49□□□□□ -0.09
NEDD9-203ENST00000397378 CAMTA1Q9Y6Y1 1673 aa14.49□□□□□ -0.09
NEDD9-203ENST00000397378 CABLES1Q8TDN4 633 aa14.48□□□□□ -0.09
NEDD9-203ENST00000397378 CCDC144AA2RUR9 1427 aa14.48□□□□□ -0.09
NEDD9-203ENST00000397378 ZNF784Q8NCA9 323 aaPredicted RBP14.47□□□□□ -0.09
NEDD9-203ENST00000397378 NINLQ9Y2I6 1382 aa14.47□□□□□ -0.09
NEDD9-203ENST00000397378 ABCA3Q99758 1704 aa14.46□□□□□ -0.09
NEDD9-203ENST00000397378 PRAG1Q86YV5 1406 aa14.46□□□□□ -0.09
NEDD9-203ENST00000397378 NRAPQ86VF7 1730 aa14.46□□□□□ -0.1
NEDD9-203ENST00000397378 KIF1AQ12756 1690 aa14.46□□□□□ -0.1
NEDD9-203ENST00000397378 KIF1BO60333 1816 aa14.45□□□□□ -0.1
NEDD9-203ENST00000397378 KRT28Q7Z3Y7 464 aa14.45□□□□□ -0.1
NEDD9-203ENST00000397378 CAMKK2Q96RR4 588 aa14.45□□□□□ -0.1
NEDD9-203ENST00000397378 SPON1Q9HCB6 807 aa14.45□□□□□ -0.1
NEDD9-203ENST00000397378 CLTCL1P53675 1640 aa14.44□□□□□ -0.1
NEDD9-203ENST00000397378 NAIPQ13075 1403 aa14.44□□□□□ -0.1
NEDD9-203ENST00000397378 TNS3Q68CZ2 1445 aa14.44□□□□□ -0.1
NEDD9-203ENST00000397378 LMOD2Q6P5Q4 547 aa14.44□□□□□ -0.1
NEDD9-203ENST00000397378 RREB1Q92766 1687 aa14.43□□□□□ -0.1
NEDD9-203ENST00000397378 TRIM37O94972 964 aa14.43□□□□□ -0.1
NEDD9-203ENST00000397378 C1QTNF8P60827 252 aa14.43□□□□□ -0.1
NEDD9-203ENST00000397378 NUP188Q5SRE5 1749 aa14.43□□□□□ -0.1
NEDD9-203ENST00000397378 APBA3O96018 575 aa14.42□□□□□ -0.1
NEDD9-203ENST00000397378 NBPF8Q3BBV2 869 aa14.42□□□□□ -0.1
NEDD9-203ENST00000397378 NBPF14Q5TI25 921 aa14.42□□□□□ -0.1
NEDD9-203ENST00000397378 PARD3Q8TEW0 1356 aa14.42□□□□□ -0.1
NEDD9-203ENST00000397378 FAM83GA6ND36 823 aa14.41□□□□□ -0.1
NEDD9-203ENST00000397378 VGFO15240 615 aaPredicted RBP14.41□□□□□ -0.1
NEDD9-203ENST00000397378 KCNQ2O43526 872 aa14.41□□□□□ -0.1
NEDD9-203ENST00000397378 BTG4Q9NY30 223 aa14.41□□□□□ -0.1
NEDD9-203ENST00000397378 FMN2Q9NZ56 1722 aa14.41□□□□□ -0.1
NEDD9-203ENST00000397378 THSD7AQ9UPZ6 1657 aa14.4□□□□□ -0.1
NEDD9-203ENST00000397378 PSME1Q06323 249 aa14.4□□□□□ -0.1
NEDD9-203ENST00000397378 COL14A1Q05707 1796 aaKnown RBP14.37□□□□□ -0.11
NEDD9-203ENST00000397378 ARHGEF10O15013 1369 aa14.37□□□□□ -0.11
NEDD9-203ENST00000397378 FAM196AQ6ZSG2 479 aa14.37□□□□□ -0.11
NEDD9-203ENST00000397378 RGPD8O14715 1765 aaPredicted RBP14.37□□□□□ -0.11
NEDD9-203ENST00000397378 WAPLQ7Z5K2 1190 aa14.36□□□□□ -0.11
NEDD9-203ENST00000397378 SPATA31A5Q5VU36 1347 aa14.36□□□□□ -0.11
NEDD9-203ENST00000397378 SPATA31A7Q8IWB4 1347 aa14.36□□□□□ -0.11
NEDD9-203ENST00000397378 STK26Q9P289 416 aa14.35□□□□□ -0.11
NEDD9-203ENST00000397378 SBNO1A3KN83 1393 aa14.34□□□□□ -0.11
NEDD9-203ENST00000397378 NRKQ7Z2Y5 1582 aa14.34□□□□□ -0.11
NEDD9-203ENST00000397378 PPLO60437 1756 aa14.34□□□□□ -0.11
NEDD9-203ENST00000397378 UTRNP46939 3433 aa14.34□□□□□ -0.11
NEDD9-203ENST00000397378 ITGAEP38570 1179 aa14.34□□□□□ -0.11
NEDD9-203ENST00000397378 PHF8Q9UPP1 1060 aa14.34□□□□□ -0.11
NEDD9-203ENST00000397378 CHD4Q14839 1912 aa14.34□□□□□ -0.11
NEDD9-203ENST00000397378 IFT172Q9UG01 1749 aa14.33□□□□□ -0.12
NEDD9-203ENST00000397378 PLEKHH1Q9ULM0 1364 aa14.32□□□□□ -0.12
NEDD9-203ENST00000397378 MYOM1P52179 1685 aa14.31□□□□□ -0.12
NEDD9-203ENST00000397378 RPGRIP1LQ68CZ1 1315 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 96.1 ms