RNA–Protein interactions for RNA: ENST00000396578.7

COL4A3-202, Transcript of collagen type IV alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A3, Length 8,097 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3-202ENST00000396578 RALYLQ86SE5 291 aaKnown RBP16.81■□□□□ 0.28
COL4A3-202ENST00000396578 SDF4Q9BRK5 362 aa16.81■□□□□ 0.28
COL4A3-202ENST00000396578 XBP1P17861 261 aa16.81■□□□□ 0.28
COL4A3-202ENST00000396578 HMGN5P82970 282 aaKnown RBP16.81■□□□□ 0.28
COL4A3-202ENST00000396578 ST20-MTHFSA0A0A6YYL1 179 aa16.81■□□□□ 0.28
COL4A3-202ENST00000396578 TRIM5Q9C035 493 aa16.81■□□□□ 0.28
COL4A3-202ENST00000396578 TSPYL1Q9H0U9 437 aa16.8■□□□□ 0.28
COL4A3-202ENST00000396578 EIF2S2P20042 333 aaKnown RBP16.8■□□□□ 0.28
COL4A3-202ENST00000396578 NUTM2DQ5VT03 806 aaPredicted RBP16.8■□□□□ 0.28
COL4A3-202ENST00000396578 WASHC2CQ9Y4E1 1318 aa16.79■□□□□ 0.28
COL4A3-202ENST00000396578 PRKRIP1Q9H875 184 aaPredicted RBP16.79■□□□□ 0.28
COL4A3-202ENST00000396578 USP47Q96K76 1375 aa16.79■□□□□ 0.28
COL4A3-202ENST00000396578 AXDND1Q5T1B0 1012 aaPredicted RBP16.79■□□□□ 0.28
COL4A3-202ENST00000396578 KIF7Q2M1P5 1343 aa16.79■□□□□ 0.28
COL4A3-202ENST00000396578 PSMA5P28066 241 aa16.79■□□□□ 0.28
COL4A3-202ENST00000396578 HSP90AB4PQ58FF6 505 aa16.79■□□□□ 0.28
COL4A3-202ENST00000396578 AAMPQ13685 434 aa16.79■□□□□ 0.28
COL4A3-202ENST00000396578 SMC2O95347 1197 aa16.78■□□□□ 0.28
COL4A3-202ENST00000396578 GOLGA6L10A6NI86 522 aa16.78■□□□□ 0.28
COL4A3-202ENST00000396578 TSPY26PQ9H489 355 aa16.78■□□□□ 0.28
COL4A3-202ENST00000396578 KINO60870 393 aaKnown RBP16.78■□□□□ 0.28
COL4A3-202ENST00000396578 PLCD4Q9BRC7 762 aa16.78■□□□□ 0.28
COL4A3-202ENST00000396578 RSPH4AQ5TD94 716 aa16.77■□□□□ 0.28
COL4A3-202ENST00000396578 MBD3O95983 291 aa16.77■□□□□ 0.28
COL4A3-202ENST00000396578 NUTM2FA1L443 756 aa16.77■□□□□ 0.28
COL4A3-202ENST00000396578 ERLIN2O94905 339 aa16.77■□□□□ 0.28
COL4A3-202ENST00000396578 TRAK2O60296 914 aa16.77■□□□□ 0.28
COL4A3-202ENST00000396578 FILIP1LQ4L180 1135 aa16.77■□□□□ 0.27
COL4A3-202ENST00000396578 CAVIN1Q6NZI2 390 aaKnown RBP16.77■□□□□ 0.27
COL4A3-202ENST00000396578 EVA1CP58658 441 aa16.77■□□□□ 0.27
COL4A3-202ENST00000396578 HSP90AB3PQ58FF7 597 aa16.77■□□□□ 0.27
COL4A3-202ENST00000396578 CT47B1P0C2W7 299 aaPredicted RBP16.76■□□□□ 0.27
COL4A3-202ENST00000396578 SKIDA1Q1XH10 827 aa16.76■□□□□ 0.27
COL4A3-202ENST00000396578 RNF214Q8ND24 703 aa16.76■□□□□ 0.27
COL4A3-202ENST00000396578 KIAA0754O94854 1291 aa16.76■□□□□ 0.27
COL4A3-202ENST00000396578 APAF1O14727 1248 aa16.75■□□□□ 0.27
COL4A3-202ENST00000396578 FKBP5Q13451 457 aaPredicted RBP16.75■□□□□ 0.27
COL4A3-202ENST00000396578 PKNOX2Q96KN3 472 aa16.75■□□□□ 0.27
COL4A3-202ENST00000396578 LNPKQ9C0E8 428 aa16.75■□□□□ 0.27
COL4A3-202ENST00000396578 MAGEC2Q9UBF1 373 aaPredicted RBP16.75■□□□□ 0.27
COL4A3-202ENST00000396578 HNRNPMP52272 730 aaKnown RBP eCLIP16.75■□□□□ 0.27
COL4A3-202ENST00000396578 NECTIN2Q92692 538 aa16.75■□□□□ 0.27
COL4A3-202ENST00000396578 GOLGA6L7A0A1B0GV03 622 aa16.75■□□□□ 0.27
COL4A3-202ENST00000396578 RIPK4P57078 832 aa16.75■□□□□ 0.27
COL4A3-202ENST00000396578 CDC45O75419 566 aa16.74■□□□□ 0.27
COL4A3-202ENST00000396578 DHX8Q14562 1220 aaKnown RBP16.74■□□□□ 0.27
COL4A3-202ENST00000396578 PRDM2Q13029 1718 aa16.73■□□□□ 0.27
COL4A3-202ENST00000396578 CNTROBQ8N137 903 aa16.73■□□□□ 0.27
COL4A3-202ENST00000396578 PDCP20941 246 aa16.73■□□□□ 0.27
COL4A3-202ENST00000396578 DIAPH1O60610 1272 aaKnown RBP16.72■□□□□ 0.27
COL4A3-202ENST00000396578 NEFHP12036 1026 aa16.72■□□□□ 0.27
COL4A3-202ENST00000396578 RUNDC1Q96C34 613 aa16.72■□□□□ 0.27
COL4A3-202ENST00000396578 SEPT7Q16181 437 aaKnown RBP16.72■□□□□ 0.27
COL4A3-202ENST00000396578 MCM2P49736 904 aa16.72■□□□□ 0.27
COL4A3-202ENST00000396578 CCDC27Q2M243 656 aa16.71■□□□□ 0.27
COL4A3-202ENST00000396578 TXLNAP40222 546 aa16.71■□□□□ 0.27
COL4A3-202ENST00000396578 SYCP1Q15431 976 aa16.71■□□□□ 0.27
COL4A3-202ENST00000396578 CWC22Q9HCG8 908 aaKnown RBP16.7■□□□□ 0.26
COL4A3-202ENST00000396578 ZNHIT6Q9NWK9 470 aaKnown RBP16.7■□□□□ 0.26
COL4A3-202ENST00000396578 ANKRD18AQ8IVF6 992 aa16.7■□□□□ 0.26
COL4A3-202ENST00000396578 EIF3JO75822 258 aaKnown RBP16.7■□□□□ 0.26
COL4A3-202ENST00000396578 PIP4K2AP48426 406 aaPredicted RBP16.69■□□□□ 0.26
COL4A3-202ENST00000396578 SART3Q15020 963 aaKnown RBP16.69■□□□□ 0.26
COL4A3-202ENST00000396578 LUC7LQ9NQ29 371 aaKnown RBP16.69■□□□□ 0.26
COL4A3-202ENST00000396578 WASHC4Q2M389 1173 aa16.69■□□□□ 0.26
COL4A3-202ENST00000396578 SPC24Q8NBT2 197 aa16.69■□□□□ 0.26
COL4A3-202ENST00000396578 RBM10P98175 930 aaKnown RBP16.69■□□□□ 0.26
COL4A3-202ENST00000396578 ZNF396Q96N95 335 aaPredicted RBP16.69■□□□□ 0.26
COL4A3-202ENST00000396578 ENOX2Q16206 610 aaKnown RBP16.68■□□□□ 0.26
COL4A3-202ENST00000396578 CDK5RAP3Q96JB5 506 aa16.68■□□□□ 0.26
COL4A3-202ENST00000396578 BRPF1P55201 1214 aaPredicted RBP16.68■□□□□ 0.26
COL4A3-202ENST00000396578 TXLNBQ8N3L3 684 aa16.68■□□□□ 0.26
COL4A3-202ENST00000396578 INCENPQ9NQS7 918 aa16.68■□□□□ 0.26
COL4A3-202ENST00000396578 USP8P40818 1118 aa16.68■□□□□ 0.26
COL4A3-202ENST00000396578 GNAI1P63096 354 aa16.67■□□□□ 0.26
COL4A3-202ENST00000396578 MSH5O43196 834 aa16.67■□□□□ 0.26
COL4A3-202ENST00000396578 TSPYL4Q9UJ04 414 aa16.66■□□□□ 0.26
COL4A3-202ENST00000396578 NEUROD6Q96NK8 337 aa16.66■□□□□ 0.26
COL4A3-202ENST00000396578 FMNL2Q96PY5 1086 aa16.66■□□□□ 0.26
COL4A3-202ENST00000396578 PRPF40AO75400 957 aaKnown RBP16.66■□□□□ 0.26
COL4A3-202ENST00000396578 CCAR1Q8IX12 1150 aaKnown RBP16.66■□□□□ 0.26
COL4A3-202ENST00000396578 CCDC192P0DO97 292 aa16.66■□□□□ 0.26
COL4A3-202ENST00000396578 HIP1O00291 1037 aa16.66■□□□□ 0.26
COL4A3-202ENST00000396578 VGFO15240 615 aaPredicted RBP16.66■□□□□ 0.26
COL4A3-202ENST00000396578 ERLIN1O75477 346 aa16.66■□□□□ 0.26
COL4A3-202ENST00000396578 FYB1O15117 783 aa16.65■□□□□ 0.26
COL4A3-202ENST00000396578 RABEP1Q15276 862 aa16.65■□□□□ 0.26
COL4A3-202ENST00000396578 CCDC181Q5TID7 509 aa16.65■□□□□ 0.26
COL4A3-202ENST00000396578 RBM33Q96EV2 1170 aaKnown RBP16.65■□□□□ 0.26
COL4A3-202ENST00000396578 SERPINC1P01008 464 aa16.65■□□□□ 0.26
COL4A3-202ENST00000396578 UBTFL1P0CB47 393 aaPredicted RBP16.65■□□□□ 0.26
COL4A3-202ENST00000396578 IQCEQ6IPM2 695 aa16.65■□□□□ 0.26
COL4A3-202ENST00000396578 DHX57Q6P158 1386 aaKnown RBP16.64■□□□□ 0.25
COL4A3-202ENST00000396578 TAF3Q5VWG9 929 aa16.64■□□□□ 0.25
COL4A3-202ENST00000396578 RIC3Q7Z5B4 369 aa16.64■□□□□ 0.25
COL4A3-202ENST00000396578 SAMD1Q6SPF0 538 aaPredicted RBP16.64■□□□□ 0.25
COL4A3-202ENST00000396578 PPFIBP1Q86W92 1011 aa16.64■□□□□ 0.25
COL4A3-202ENST00000396578 CCDC88BA6NC98 1476 aa16.64■□□□□ 0.25
COL4A3-202ENST00000396578 CCDC112Q8NEF3 446 aa16.64■□□□□ 0.25
COL4A3-202ENST00000396578 ANKRD62A6NC57 917 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms