RNA–Protein interactions for RNA: ENST00000393454.6

TDP1-203, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TDP1, Length 2,068 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-203ENST00000393454 MYBBP1AQ9BQG0 1328 aaKnown RBP11.74□□□□□ -0.53
TDP1-203ENST00000393454 SLC12A5Q9H2X9 1139 aa11.73□□□□□ -0.53
TDP1-203ENST00000393454 DLC1Q96QB1 1528 aa11.73□□□□□ -0.53
TDP1-203ENST00000393454 ADAMTS13Q76LX8 1427 aa11.73□□□□□ -0.53
TDP1-203ENST00000393454 PUS7Q96PZ0 661 aaKnown RBP11.72□□□□□ -0.53
TDP1-203ENST00000393454 SETD1BQ9UPS6 1966 aaKnown RBP11.72□□□□□ -0.53
TDP1-203ENST00000393454 PARD3Q8TEW0 1356 aa11.72□□□□□ -0.53
TDP1-203ENST00000393454 PLEKHH1Q9ULM0 1364 aa11.72□□□□□ -0.53
TDP1-203ENST00000393454 CDK19Q9BWU1 502 aa11.71□□□□□ -0.53
TDP1-203ENST00000393454 CARD14Q9BXL6 1004 aa11.71□□□□□ -0.54
TDP1-203ENST00000393454 AMER1Q5JTC6 1135 aaPredicted RBP11.7□□□□□ -0.54
TDP1-203ENST00000393454 ANKLE2Q86XL3 938 aa11.7□□□□□ -0.54
TDP1-203ENST00000393454 KNDC1Q76NI1 1749 aa11.69□□□□□ -0.54
TDP1-203ENST00000393454 HNRNPUQ00839 825 aaKnown RBP eCLIP11.69□□□□□ -0.54
TDP1-203ENST00000393454 NLRP13Q86W25 1043 aa11.69□□□□□ -0.54
TDP1-203ENST00000393454 TBX22Q9Y458 520 aa11.69□□□□□ -0.54
TDP1-203ENST00000393454 ZNF142P52746 1687 aaPredicted RBP11.69□□□□□ -0.54
TDP1-203ENST00000393454 SIRT1Q96EB6 747 aa11.69□□□□□ -0.54
TDP1-203ENST00000393454 BRD4O60885 1362 aaPredicted RBP11.69□□□□□ -0.54
TDP1-203ENST00000393454 ATAD2Q6PL18 1390 aa11.68□□□□□ -0.54
TDP1-203ENST00000393454 MED14O60244 1454 aa11.68□□□□□ -0.54
TDP1-203ENST00000393454 TECPR2O15040 1411 aa11.68□□□□□ -0.54
TDP1-203ENST00000393454 FAM135BQ49AJ0 1406 aa11.68□□□□□ -0.54
TDP1-203ENST00000393454 NSD3Q9BZ95 1437 aa11.68□□□□□ -0.54
TDP1-203ENST00000393454 AMOTL2Q9Y2J4 779 aa11.67□□□□□ -0.54
TDP1-203ENST00000393454 CPS1P31327 1500 aa11.67□□□□□ -0.54
TDP1-203ENST00000393454 ROBO2Q9HCK4 1378 aa11.67□□□□□ -0.54
TDP1-203ENST00000393454 NPC1L1Q9UHC9 1359 aa11.66□□□□□ -0.54
TDP1-203ENST00000393454 WASLO00401 505 aaPredicted RBP11.66□□□□□ -0.54
TDP1-203ENST00000393454 DIP2AQ14689 1571 aa11.66□□□□□ -0.54
TDP1-203ENST00000393454 ANKRD36BQ8N2N9 1353 aa11.66□□□□□ -0.54
TDP1-203ENST00000393454 NINLQ9Y2I6 1382 aa11.66□□□□□ -0.54
TDP1-203ENST00000393454 PNISRQ8TF01 805 aaKnown RBP11.66□□□□□ -0.54
TDP1-203ENST00000393454 TERF2IPQ9NYB0 399 aa11.66□□□□□ -0.54
TDP1-203ENST00000393454 PTPRUQ92729 1446 aa11.66□□□□□ -0.54
TDP1-203ENST00000393454 PPP2R1AP30153 589 aa11.65□□□□□ -0.54
TDP1-203ENST00000393454 CABP1Q9NZU7 370 aa11.65□□□□□ -0.54
TDP1-203ENST00000393454 HDGFL2Q7Z4V5 671 aaPredicted RBP11.64□□□□□ -0.55
TDP1-203ENST00000393454 CGNL1Q0VF96 1302 aa11.64□□□□□ -0.55
TDP1-203ENST00000393454 MORC1Q86VD1 984 aa11.64□□□□□ -0.55
TDP1-203ENST00000393454 A0A1W2PP64 1363 aa11.63□□□□□ -0.55
TDP1-203ENST00000393454 NUDT16Q96DE0 195 aaKnown RBP11.62□□□□□ -0.55
TDP1-203ENST00000393454 TNNT2P45379 298 aaPredicted RBP11.61□□□□□ -0.55
TDP1-203ENST00000393454 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.61□□□□□ -0.55
TDP1-203ENST00000393454 NCKAP5LQ9HCH0 1330 aa11.61□□□□□ -0.55
TDP1-203ENST00000393454 KCNA6P17658 529 aa11.61□□□□□ -0.55
TDP1-203ENST00000393454 PIK3R4Q99570 1358 aa11.61□□□□□ -0.55
TDP1-203ENST00000393454 USP32Q8NFA0 1604 aa11.6□□□□□ -0.55
TDP1-203ENST00000393454 NUTM2FA1L443 756 aa11.6□□□□□ -0.55
TDP1-203ENST00000393454 GTF3C3Q9Y5Q9 886 aa11.6□□□□□ -0.55
TDP1-203ENST00000393454 NPHP4O75161 1426 aaPredicted RBP11.6□□□□□ -0.55
TDP1-203ENST00000393454 PTCH1Q13635 1447 aa11.6□□□□□ -0.55
TDP1-203ENST00000393454 PPIP5K1Q6PFW1 1433 aa11.6□□□□□ -0.55
TDP1-203ENST00000393454 CCDC61Q9Y6R9 512 aa11.59□□□□□ -0.55
TDP1-203ENST00000393454 CD163L1Q9NR16 1453 aa11.59□□□□□ -0.55
TDP1-203ENST00000393454 SCAF1Q9H7N4 1312 aaKnown RBP11.59□□□□□ -0.55
TDP1-203ENST00000393454 XRN1Q8IZH2 1706 aaKnown RBP11.59□□□□□ -0.55
TDP1-203ENST00000393454 NSD2O96028 1365 aa11.58□□□□□ -0.56
TDP1-203ENST00000393454 SENP3-EIF4A1A0A087X0R7 540 aa11.58□□□□□ -0.56
TDP1-203ENST00000393454 ADGRB2O60241 1585 aa11.58□□□□□ -0.56
TDP1-203ENST00000393454 ATP7BP35670 1465 aa11.58□□□□□ -0.56
TDP1-203ENST00000393454 WDR43Q15061 677 aaKnown RBP eCLIP11.58□□□□□ -0.56
TDP1-203ENST00000393454 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.58□□□□□ -0.56
TDP1-203ENST00000393454 GGNBP2Q9H3C7 697 aa11.58□□□□□ -0.56
TDP1-203ENST00000393454 CHD2O14647 1828 aaKnown RBP11.57□□□□□ -0.56
TDP1-203ENST00000393454 ZBED9Q6R2W3 1325 aa11.57□□□□□ -0.56
TDP1-203ENST00000393454 PRR36Q9H6K5 1346 aa11.57□□□□□ -0.56
TDP1-203ENST00000393454 KDM4FA0A1W2PPD8 638 aa11.56□□□□□ -0.56
TDP1-203ENST00000393454 FYB1O15117 783 aa11.56□□□□□ -0.56
TDP1-203ENST00000393454 RBM33Q96EV2 1170 aaKnown RBP11.55□□□□□ -0.56
TDP1-203ENST00000393454 ADAMTS8Q9UP79 889 aa11.55□□□□□ -0.56
TDP1-203ENST00000393454 ITSN1Q15811 1721 aa11.54□□□□□ -0.56
TDP1-203ENST00000393454 CDC42BPGQ6DT37 1551 aa11.54□□□□□ -0.56
TDP1-203ENST00000393454 HSPA2P54652 639 aa11.54□□□□□ -0.56
TDP1-203ENST00000393454 ZNF692Q9BU19 519 aaPredicted RBP11.54□□□□□ -0.56
TDP1-203ENST00000393454 KIF20BQ96Q89 1820 aa11.54□□□□□ -0.56
TDP1-203ENST00000393454 CPSF1Q10570 1443 aaKnown RBP11.53□□□□□ -0.56
TDP1-203ENST00000393454 MTHFSP49914 203 aa11.53□□□□□ -0.56
TDP1-203ENST00000393454 C14orf37Q86TY3 774 aa11.53□□□□□ -0.56
TDP1-203ENST00000393454 SALL2Q9Y467 1007 aaPredicted RBP11.53□□□□□ -0.56
TDP1-203ENST00000393454 CFAP53Q96M91 514 aa11.53□□□□□ -0.56
TDP1-203ENST00000393454 ACEP12821 1306 aa11.52□□□□□ -0.56
TDP1-203ENST00000393454 EDC4Q6P2E9 1401 aaKnown RBP11.52□□□□□ -0.56
TDP1-203ENST00000393454 ANKRD26Q9UPS8 1709 aa11.52□□□□□ -0.56
TDP1-203ENST00000393454 PMFBP1Q8TBY8 1022 aa11.52□□□□□ -0.57
TDP1-203ENST00000393454 AKAP12Q02952 1782 aa11.52□□□□□ -0.57
TDP1-203ENST00000393454 TOPAZ1Q8N9V7 1692 aa11.52□□□□□ -0.57
TDP1-203ENST00000393454 POLR3AO14802 1390 aaPredicted RBP11.52□□□□□ -0.57
TDP1-203ENST00000393454 PLEKHG3A1L390 1219 aa11.51□□□□□ -0.57
TDP1-203ENST00000393454 RGPD8O14715 1765 aaPredicted RBP11.51□□□□□ -0.57
TDP1-203ENST00000393454 NME9Q86XW9 330 aa11.51□□□□□ -0.57
TDP1-203ENST00000393454 NGDNQ8NEJ9 315 aaKnown RBP11.51□□□□□ -0.57
TDP1-203ENST00000393454 MON2Q7Z3U7 1717 aa11.51□□□□□ -0.57
TDP1-203ENST00000393454 PROSER2Q86WR7 435 aaPredicted RBP11.5□□□□□ -0.57
TDP1-203ENST00000393454 BLMP54132 1417 aaPredicted RBP11.5□□□□□ -0.57
TDP1-203ENST00000393454 INSRP06213 1382 aa11.5□□□□□ -0.57
TDP1-203ENST00000393454 NALCNQ8IZF0 1738 aa11.49□□□□□ -0.57
TDP1-203ENST00000393454 COG3Q96JB2 828 aa11.49□□□□□ -0.57
TDP1-203ENST00000393454 NKTRP30414 1462 aaKnown RBP11.49□□□□□ -0.57
TDP1-203ENST00000393454 FMN2Q9NZ56 1722 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms