RNA–Protein interactions for RNA: ENST00000380393.7

PTPRA-204, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

TSL 1 (best) BASIC

Gene PTPRA, Length 3,636 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-204ENST00000380393 MIA2Q96PC5 1412 aa11.67□□□□□ -0.54
PTPRA-204ENST00000380393 CDC42BPAQ5VT25 1732 aa11.67□□□□□ -0.54
PTPRA-204ENST00000380393 ZNF710Q8N1W2 664 aa11.67□□□□□ -0.54
PTPRA-204ENST00000380393 EP400NLQ6ZTU2 488 aa11.66□□□□□ -0.54
PTPRA-204ENST00000380393 DAPK1P53355 1430 aa11.66□□□□□ -0.54
PTPRA-204ENST00000380393 MLECQ14165 292 aa11.66□□□□□ -0.54
PTPRA-204ENST00000380393 KIF7Q2M1P5 1343 aa11.66□□□□□ -0.54
PTPRA-204ENST00000380393 CAPN2P17655 700 aa11.66□□□□□ -0.54
PTPRA-204ENST00000380393 CENPQQ7L2Z9 268 aaPredicted RBP11.65□□□□□ -0.54
PTPRA-204ENST00000380393 KIF3AQ9Y496 699 aa11.65□□□□□ -0.54
PTPRA-204ENST00000380393 USP19O94966 1318 aa11.65□□□□□ -0.54
PTPRA-204ENST00000380393 MYRIPQ8NFW9 859 aa11.65□□□□□ -0.54
PTPRA-204ENST00000380393 TNNT3P45378 269 aaPredicted RBP11.65□□□□□ -0.55
PTPRA-204ENST00000380393 EFCAB2Q5VUJ9 269 aa11.65□□□□□ -0.55
PTPRA-204ENST00000380393 ZBTB7CA1YPR0 619 aa11.64□□□□□ -0.55
PTPRA-204ENST00000380393 TSPY4P0CV99 314 aa11.64□□□□□ -0.55
PTPRA-204ENST00000380393 TSPY10P0CW01 314 aa11.64□□□□□ -0.55
PTPRA-204ENST00000380393 CCDC9Q9Y3X0 531 aaKnown RBP11.64□□□□□ -0.55
PTPRA-204ENST00000380393 TCOF1Q13428 1488 aaKnown RBP11.64□□□□□ -0.55
PTPRA-204ENST00000380393 HS1BP3Q53T59 392 aa11.64□□□□□ -0.55
PTPRA-204ENST00000380393 CHMP5Q9NZZ3 219 aa11.64□□□□□ -0.55
PTPRA-204ENST00000380393 BANK1Q8NDB2 785 aa11.64□□□□□ -0.55
PTPRA-204ENST00000380393 TSPYL1Q9H0U9 437 aa11.64□□□□□ -0.55
PTPRA-204ENST00000380393 NAIPQ13075 1403 aa11.63□□□□□ -0.55
PTPRA-204ENST00000380393 CDC42BPBQ9Y5S2 1711 aa11.63□□□□□ -0.55
PTPRA-204ENST00000380393 ARHGEF12Q9NZN5 1544 aa11.63□□□□□ -0.55
PTPRA-204ENST00000380393 KDM6BO15054 1643 aa11.63□□□□□ -0.55
PTPRA-204ENST00000380393 LMOD3Q0VAK6 560 aa11.63□□□□□ -0.55
PTPRA-204ENST00000380393 PDCL2Q8N4E4 241 aa11.63□□□□□ -0.55
PTPRA-204ENST00000380393 TBC1D2Q9BYX2 928 aa11.63□□□□□ -0.55
PTPRA-204ENST00000380393 KDM2BQ8NHM5 1336 aa11.63□□□□□ -0.55
PTPRA-204ENST00000380393 RAPGEF3O95398 923 aa11.62□□□□□ -0.55
PTPRA-204ENST00000380393 CARD10Q9BWT7 1032 aa11.62□□□□□ -0.55
PTPRA-204ENST00000380393 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.62□□□□□ -0.55
PTPRA-204ENST00000380393 NBPF8Q3BBV2 869 aa11.62□□□□□ -0.55
PTPRA-204ENST00000380393 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.62□□□□□ -0.55
PTPRA-204ENST00000380393 TRERF1Q96PN7 1200 aa11.62□□□□□ -0.55
PTPRA-204ENST00000380393 ZKSCAN5Q9Y2L8 839 aa11.62□□□□□ -0.55
PTPRA-204ENST00000380393 PLCH2O75038 1416 aa11.62□□□□□ -0.55
PTPRA-204ENST00000380393 SYCP2Q9BX26 1530 aa11.62□□□□□ -0.55
PTPRA-204ENST00000380393 SAMD9LQ8IVG5 1584 aa11.61□□□□□ -0.55
PTPRA-204ENST00000380393 TICAM2Q86XR7 235 aa11.61□□□□□ -0.55
PTPRA-204ENST00000380393 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.61□□□□□ -0.55
PTPRA-204ENST00000380393 U2AF2P26368 475 aaKnown RBP eCLIP11.61□□□□□ -0.552e-8■■■□□ 17.9
PTPRA-204ENST00000380393 FBXO3Q9UK99 471 aa11.61□□□□□ -0.55
PTPRA-204ENST00000380393 TRAPPC8Q9Y2L5 1435 aa11.61□□□□□ -0.55
PTPRA-204ENST00000380393 FAM177BA6PVY3 158 aa11.61□□□□□ -0.55
PTPRA-204ENST00000380393 PHF14O94880 888 aa11.61□□□□□ -0.55
PTPRA-204ENST00000380393 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.6□□□□□ -0.558e-7■■■□□ 18.7
PTPRA-204ENST00000380393 CD109Q6YHK3 1445 aa11.6□□□□□ -0.55
PTPRA-204ENST00000380393 TULP2O00295 520 aa11.6□□□□□ -0.55
PTPRA-204ENST00000380393 C20orf194Q5TEA3 1177 aa11.6□□□□□ -0.55
PTPRA-204ENST00000380393 MBD5Q9P267 1494 aa11.6□□□□□ -0.55
PTPRA-204ENST00000380393 MPHOSPH9Q99550 1183 aa11.6□□□□□ -0.55
PTPRA-204ENST00000380393 UPF2Q9HAU5 1272 aaKnown RBP11.6□□□□□ -0.55
PTPRA-204ENST00000380393 CALCOCO1Q9P1Z2 691 aa11.6□□□□□ -0.55
PTPRA-204ENST00000380393 GABPB1Q06547 395 aaPredicted RBP11.59□□□□□ -0.55
PTPRA-204ENST00000380393 EFCC1Q9HA90 598 aa11.59□□□□□ -0.55
PTPRA-204ENST00000380393 SEC24BO95487 1268 aa11.59□□□□□ -0.55
PTPRA-204ENST00000380393 HFM1A2PYH4 1435 aa11.59□□□□□ -0.55
PTPRA-204ENST00000380393 FANCAO15360 1455 aa11.58□□□□□ -0.56
PTPRA-204ENST00000380393 PLCD4Q9BRC7 762 aa11.58□□□□□ -0.56
PTPRA-204ENST00000380393 ITSN2Q9NZM3 1697 aa11.58□□□□□ -0.56
PTPRA-204ENST00000380393 EGFL6Q8IUX8 553 aa11.58□□□□□ -0.56
PTPRA-204ENST00000380393 C9orf84Q5VXU9 1444 aa11.58□□□□□ -0.56
PTPRA-204ENST00000380393 TRHP20396 242 aaPredicted RBP11.58□□□□□ -0.56
PTPRA-204ENST00000380393 MCM5P33992 734 aa11.58□□□□□ -0.56
PTPRA-204ENST00000380393 HMGN5P82970 282 aaKnown RBP11.58□□□□□ -0.56
PTPRA-204ENST00000380393 NCOA1Q15788 1441 aa11.57□□□□□ -0.56
PTPRA-204ENST00000380393 PREX2Q70Z35 1606 aa11.57□□□□□ -0.56
PTPRA-204ENST00000380393 CDCA7LQ96GN5 454 aa11.57□□□□□ -0.56
PTPRA-204ENST00000380393 SCAPERQ9BY12 1400 aa11.57□□□□□ -0.56
PTPRA-204ENST00000380393 SKOR2Q2VWA4 1001 aaPredicted RBP11.57□□□□□ -0.56
PTPRA-204ENST00000380393 PRIMPOLQ96LW4 560 aa11.57□□□□□ -0.56
PTPRA-204ENST00000380393 DNMT1P26358 1616 aaKnown RBP11.57□□□□□ -0.56
PTPRA-204ENST00000380393 ERICH4A6NGS2 130 aa11.56□□□□□ -0.56
PTPRA-204ENST00000380393 GTF2A1P52655 376 aaPredicted RBP11.56□□□□□ -0.56
PTPRA-204ENST00000380393 PNISRQ8TF01 805 aaKnown RBP11.56□□□□□ -0.56
PTPRA-204ENST00000380393 MCCP23508 829 aa11.56□□□□□ -0.56
PTPRA-204ENST00000380393 MYO5CQ9NQX4 1742 aa11.56□□□□□ -0.56
PTPRA-204ENST00000380393 MYCBPQ99417 103 aaPredicted RBP11.56□□□□□ -0.56
PTPRA-204ENST00000380393 SLFN14P0C7P3 912 aa11.55□□□□□ -0.56
PTPRA-204ENST00000380393 SLC4A1APQ9BWU0 796 aaKnown RBP11.55□□□□□ -0.56
PTPRA-204ENST00000380393 BCL2L12Q9HB09 334 aa11.55□□□□□ -0.56
PTPRA-204ENST00000380393 FEZ2Q9UHY8 353 aaPredicted RBP11.55□□□□□ -0.56
PTPRA-204ENST00000380393 KIF15Q9NS87 1388 aa11.55□□□□□ -0.56
PTPRA-204ENST00000380393 FEZ1Q99689 392 aa11.55□□□□□ -0.56
PTPRA-204ENST00000380393 DNAJC5Q9H3Z4 198 aa11.55□□□□□ -0.56
PTPRA-204ENST00000380393 NINLQ9Y2I6 1382 aa11.55□□□□□ -0.56
PTPRA-204ENST00000380393 SPAG9O60271 1321 aaKnown RBP11.54□□□□□ -0.56
PTPRA-204ENST00000380393 SIRT1Q96EB6 747 aa11.54□□□□□ -0.56
PTPRA-204ENST00000380393 OGFRQ9NZT2 677 aa11.54□□□□□ -0.56
PTPRA-204ENST00000380393 TSPOAP1O95153 1857 aa11.54□□□□□ -0.56
PTPRA-204ENST00000380393 CT47A1Q5JQC4 288 aaPredicted RBP11.54□□□□□ -0.56
PTPRA-204ENST00000380393 ANKRD30AQ9BXX3 1397 aa11.54□□□□□ -0.56
PTPRA-204ENST00000380393 ADGRL1O94910 1474 aa11.54□□□□□ -0.56
PTPRA-204ENST00000380393 GBP4Q96PP9 640 aa11.53□□□□□ -0.56
PTPRA-204ENST00000380393 TMX1Q9H3N1 280 aa11.53□□□□□ -0.56
PTPRA-204ENST00000380393 GTF2F1P35269 517 aaKnown RBP eCLIP11.53□□□□□ -0.56
PTPRA-204ENST00000380393 RSPH14Q9UHP6 348 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 91.8 ms