RNA–Protein interactions for RNA: ENST00000378161.5

NPHP4-202, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,370 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-202ENST00000378161 ERBB4Q15303 1308 aa14.3□□□□□ -0.12
NPHP4-202ENST00000378161 NESP48681 1621 aa14.3□□□□□ -0.12
NPHP4-202ENST00000378161 CAVIN1Q6NZI2 390 aaKnown RBP14.3□□□□□ -0.12
NPHP4-202ENST00000378161 PANK3Q9H999 370 aa14.3□□□□□ -0.12
NPHP4-202ENST00000378161 CCDC91Q7Z6B0 441 aa14.29□□□□□ -0.12
NPHP4-202ENST00000378161 CFAP44Q96MT7 982 aa14.29□□□□□ -0.12
NPHP4-202ENST00000378161 TMX1Q9H3N1 280 aa14.29□□□□□ -0.12
NPHP4-202ENST00000378161 NAIPQ13075 1403 aa14.29□□□□□ -0.12
NPHP4-202ENST00000378161 LOC102724159A0A0B4J2E5 919 aa14.29□□□□□ -0.12
NPHP4-202ENST00000378161 PWP2Q15269 919 aaKnown RBP14.29□□□□□ -0.12
NPHP4-202ENST00000378161 SRPK2P78362 688 aaKnown RBP14.29□□□□□ -0.12
NPHP4-202ENST00000378161 SKAP1Q86WV1 359 aa14.28□□□□□ -0.12
NPHP4-202ENST00000378161 RNF214Q8ND24 703 aa14.28□□□□□ -0.12
NPHP4-202ENST00000378161 ZNF592Q92610 1267 aa14.28□□□□□ -0.12
NPHP4-202ENST00000378161 CHMP4CQ96CF2 233 aa14.28□□□□□ -0.12
NPHP4-202ENST00000378161 GEMIN8Q9NWZ8 242 aaKnown RBP14.28□□□□□ -0.12
NPHP4-202ENST00000378161 BRD4O60885 1362 aaPredicted RBP14.28□□□□□ -0.12
NPHP4-202ENST00000378161 ZNF644Q9H582 1327 aaPredicted RBP14.28□□□□□ -0.12
NPHP4-202ENST00000378161 USP8P40818 1118 aa14.27□□□□□ -0.12
NPHP4-202ENST00000378161 MIA2Q96PC5 1412 aa14.27□□□□□ -0.12
NPHP4-202ENST00000378161 RNF216Q9NWF9 866 aaPredicted RBP14.27□□□□□ -0.12
NPHP4-202ENST00000378161 ZBTB12Q9Y330 459 aaPredicted RBP14.27□□□□□ -0.12
NPHP4-202ENST00000378161 NINLQ9Y2I6 1382 aa14.27□□□□□ -0.12
NPHP4-202ENST00000378161 EHBP1L1Q8N3D4 1523 aa14.27□□□□□ -0.12
NPHP4-202ENST00000378161 U2AF2P26368 475 aaKnown RBP eCLIP14.27□□□□□ -0.13
NPHP4-202ENST00000378161 CCDC184Q52MB2 194 aa14.27□□□□□ -0.13
NPHP4-202ENST00000378161 RWDD1Q9H446 243 aaPredicted RBP14.27□□□□□ -0.13
NPHP4-202ENST00000378161 EFCAB2Q5VUJ9 269 aa14.27□□□□□ -0.13
NPHP4-202ENST00000378161 PMFBP1Q8TBY8 1022 aa14.27□□□□□ -0.13
NPHP4-202ENST00000378161 PAIP2Q9BPZ3 127 aaKnown RBP14.27□□□□□ -0.13
NPHP4-202ENST00000378161 EIF3AQ14152 1382 aaKnown RBP14.26□□□□□ -0.13
NPHP4-202ENST00000378161 MPHOSPH10O00566 681 aaKnown RBP14.26□□□□□ -0.13
NPHP4-202ENST00000378161 ZNF500O60304 480 aaPredicted RBP14.26□□□□□ -0.13
NPHP4-202ENST00000378161 TPM4P67936 248 aa14.26□□□□□ -0.13
NPHP4-202ENST00000378161 NBPF8Q3BBV2 869 aa14.26□□□□□ -0.13
NPHP4-202ENST00000378161 AK7Q96M32 723 aa14.26□□□□□ -0.13
NPHP4-202ENST00000378161 U2SURPO15042 1029 aaKnown RBP14.26□□□□□ -0.13
NPHP4-202ENST00000378161 YY1AP1Q9H869 796 aa14.26□□□□□ -0.13
NPHP4-202ENST00000378161 NRDCO43847 1150 aa14.25□□□□□ -0.13
NPHP4-202ENST00000378161 ARID4AP29374 1257 aaPredicted RBP14.25□□□□□ -0.13
NPHP4-202ENST00000378161 LEKR1Q6ZMV7 388 aa14.25□□□□□ -0.13
NPHP4-202ENST00000378161 C10orf67Q8IYJ2 551 aa14.25□□□□□ -0.13
NPHP4-202ENST00000378161 NOL10Q9BSC4 688 aaKnown RBP14.25□□□□□ -0.13
NPHP4-202ENST00000378161 H0YHG0 523 aa14.25□□□□□ -0.13
NPHP4-202ENST00000378161 SARNPP82979 210 aaKnown RBP14.25□□□□□ -0.13
NPHP4-202ENST00000378161 GIMAP7Q8NHV1 300 aa14.25□□□□□ -0.13
NPHP4-202ENST00000378161 AQRO60306 1485 aaKnown RBP eCLIP14.24□□□□□ -0.134e-7■■■■■ 68.3
NPHP4-202ENST00000378161 ARGLU1Q9NWB6 273 aaPredicted RBP14.24□□□□□ -0.13
NPHP4-202ENST00000378161 TPM3P06753 285 aa14.24□□□□□ -0.13
NPHP4-202ENST00000378161 CIZ1Q9ULV3 898 aaPredicted RBP14.24□□□□□ -0.13
NPHP4-202ENST00000378161 RDXP35241 583 aaKnown RBP14.24□□□□□ -0.13
NPHP4-202ENST00000378161 CCDC112Q8NEF3 446 aa14.24□□□□□ -0.13
NPHP4-202ENST00000378161 C22orf23Q9BZE7 217 aa14.24□□□□□ -0.13
NPHP4-202ENST00000378161 TBC1D2Q9BYX2 928 aa14.23□□□□□ -0.13
NPHP4-202ENST00000378161 MCTP1Q6DN14 999 aa14.23□□□□□ -0.13
NPHP4-202ENST00000378161 MRVI1Q9Y6F6 885 aa14.23□□□□□ -0.13
NPHP4-202ENST00000378161 LRCH2Q5VUJ6 765 aa14.23□□□□□ -0.13
NPHP4-202ENST00000378161 CASC1Q6TDU7 716 aa14.23□□□□□ -0.13
NPHP4-202ENST00000378161 CREBRFQ8IUR6 639 aa14.23□□□□□ -0.13
NPHP4-202ENST00000378161 CC2D2AQ9P2K1 1620 aa14.23□□□□□ -0.13
NPHP4-202ENST00000378161 ZRSR1Q15695 479 aaKnown RBP14.22□□□□□ -0.13
NPHP4-202ENST00000378161 CEP83Q9Y592 693 aa14.22□□□□□ -0.13
NPHP4-202ENST00000378161 ANKRD50Q9ULJ7 1429 aa14.22□□□□□ -0.13
NPHP4-202ENST00000378161 CT47A1Q5JQC4 288 aaPredicted RBP14.22□□□□□ -0.13
NPHP4-202ENST00000378161 DRC1Q96MC2 740 aa14.22□□□□□ -0.13
NPHP4-202ENST00000378161 PPP1R9BQ96SB3 815 aa14.22□□□□□ -0.13
NPHP4-202ENST00000378161 PNISRQ8TF01 805 aaKnown RBP14.22□□□□□ -0.13
NPHP4-202ENST00000378161 BIVM-ERCC5R4GMW8 1640 aa14.22□□□□□ -0.13
NPHP4-202ENST00000378161 CCDC146Q8IYE0 955 aa14.21□□□□□ -0.13
NPHP4-202ENST00000378161 MPNDQ8N594 471 aa14.21□□□□□ -0.13
NPHP4-202ENST00000378161 CEP120Q8N960 986 aa14.21□□□□□ -0.13
NPHP4-202ENST00000378161 PCF11O94913 1555 aaKnown RBP14.21□□□□□ -0.13
NPHP4-202ENST00000378161 CHRM1P11229 460 aaPredicted RBP14.21□□□□□ -0.13
NPHP4-202ENST00000378161 TXLNBQ8N3L3 684 aa14.21□□□□□ -0.13
NPHP4-202ENST00000378161 TTC31Q49AM3 519 aaPredicted RBP14.21□□□□□ -0.14
NPHP4-202ENST00000378161 KIF16BQ96L93 1317 aa14.21□□□□□ -0.14
NPHP4-202ENST00000378161 MAPKBP1O60336 1514 aa14.21□□□□□ -0.14
NPHP4-202ENST00000378161 IFT57Q9NWB7 429 aa14.2□□□□□ -0.14
NPHP4-202ENST00000378161 IPO8O15397 1037 aaKnown RBP14.2□□□□□ -0.14
NPHP4-202ENST00000378161 NGEFQ8N5V2 710 aa14.2□□□□□ -0.14
NPHP4-202ENST00000378161 SLC20A2Q08357 652 aa14.2□□□□□ -0.14
NPHP4-202ENST00000378161 CGNL1Q0VF96 1302 aa14.2□□□□□ -0.14
NPHP4-202ENST00000378161 FAM177BA6PVY3 158 aa14.2□□□□□ -0.14
NPHP4-202ENST00000378161 POLA1P09884 1462 aaPredicted RBP14.19□□□□□ -0.14
NPHP4-202ENST00000378161 A0A1B0GUL7 405 aa14.19□□□□□ -0.14
NPHP4-202ENST00000378161 NCAPGQ9BPX3 1015 aa14.19□□□□□ -0.14
NPHP4-202ENST00000378161 BRMS1Q9HCU9 246 aa14.19□□□□□ -0.14
NPHP4-202ENST00000378161 CCDC172P0C7W6 258 aa14.19□□□□□ -0.14
NPHP4-202ENST00000378161 U2AF1L5P0DN76 240 aaPredicted RBP14.19□□□□□ -0.14
NPHP4-202ENST00000378161 U2AF1Q01081 240 aaKnown RBP eCLIP14.19□□□□□ -0.14
NPHP4-202ENST00000378161 TSC1Q92574 1164 aa14.19□□□□□ -0.14
NPHP4-202ENST00000378161 NOLC1Q14978 699 aaKnown RBP eCLIP14.19□□□□□ -0.14
NPHP4-202ENST00000378161 ANKRD20A12PQ8NF67 263 aa14.19□□□□□ -0.14
NPHP4-202ENST00000378161 NUCB2P80303 420 aa14.18□□□□□ -0.14
NPHP4-202ENST00000378161 TOPBP1Q92547 1522 aa14.18□□□□□ -0.14
NPHP4-202ENST00000378161 SATB1Q01826 763 aa14.18□□□□□ -0.14
NPHP4-202ENST00000378161 C8orf34Q49A92 452 aa14.18□□□□□ -0.14
NPHP4-202ENST00000378161 TAOK2Q9UL54 1235 aa14.18□□□□□ -0.14
NPHP4-202ENST00000378161 SUPT6HQ7KZ85 1726 aaKnown RBP14.18□□□□□ -0.14
NPHP4-202ENST00000378161 ICE2Q659A1 982 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms