RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 GUCA2AQ02747 115 aa5.72□□□□□ -1.49
VPS13A-206ENST00000376646 PLA2G2CQ5R387 149 aa5.72□□□□□ -1.49
VPS13A-206ENST00000376646 TMUB1Q9BVT8 246 aa5.72□□□□□ -1.49
VPS13A-206ENST00000376646 GGCXP38435 758 aa5.71□□□□□ -1.5
VPS13A-206ENST00000376646 THAP11Q96EK4 314 aa5.71□□□□□ -1.5
VPS13A-206ENST00000376646 SLC6A16Q9GZN6 736 aa5.71□□□□□ -1.5
VPS13A-206ENST00000376646 KDM4AO75164 1064 aa5.71□□□□□ -1.5
VPS13A-206ENST00000376646 CLCN1P35523 988 aa5.71□□□□□ -1.5
VPS13A-206ENST00000376646 TTLL12Q14166 644 aaPredicted RBP5.71□□□□□ -1.5
VPS13A-206ENST00000376646 FAM160A2Q8N612 972 aaPredicted RBP5.7□□□□□ -1.5
VPS13A-206ENST00000376646 KRTAP4-2Q9BYR5 136 aa5.69□□□□□ -1.5
VPS13A-206ENST00000376646 LIAT1Q6ZQX7 453 aa5.69□□□□□ -1.5
VPS13A-206ENST00000376646 KRTAP4-9Q9BYQ8 210 aa5.69□□□□□ -1.5
VPS13A-206ENST00000376646 SSTR3P32745 418 aaPredicted RBP5.68□□□□□ -1.5
VPS13A-206ENST00000376646 BRICD5Q6PL45 260 aa5.68□□□□□ -1.5
VPS13A-206ENST00000376646 SYMPKQ92797 1274 aaKnown RBP5.68□□□□□ -1.5
VPS13A-206ENST00000376646 SLC24A3Q9HC58 644 aa5.68□□□□□ -1.5
VPS13A-206ENST00000376646 TRIM66O15016 1216 aa5.68□□□□□ -1.5
VPS13A-206ENST00000376646 HOXA2O43364 376 aa5.68□□□□□ -1.5
VPS13A-206ENST00000376646 FMNL1O95466 1100 aaPredicted RBP5.68□□□□□ -1.5
VPS13A-206ENST00000376646 SLC19A1P41440 591 aa5.68□□□□□ -1.5
VPS13A-206ENST00000376646 GIGYF2Q6Y7W6 1299 aaKnown RBP5.68□□□□□ -1.5
VPS13A-206ENST00000376646 ANKLE1Q8NAG6 615 aa5.68□□□□□ -1.5
VPS13A-206ENST00000376646 V9GY48 417 aaPredicted RBP5.68□□□□□ -1.5
VPS13A-206ENST00000376646 AMHR2Q16671 573 aa5.67□□□□□ -1.5
VPS13A-206ENST00000376646 PARP9Q8IXQ6 854 aa5.67□□□□□ -1.5
VPS13A-206ENST00000376646 KCNMA1Q12791 1236 aa5.67□□□□□ -1.5
VPS13A-206ENST00000376646 KCTD17Q8N5Z5 321 aa5.67□□□□□ -1.5
VPS13A-206ENST00000376646 FCF1Q9Y324 198 aaKnown RBP5.67□□□□□ -1.5
VPS13A-206ENST00000376646 TRIM67Q6ZTA4 783 aa5.66□□□□□ -1.5
VPS13A-206ENST00000376646 MS4A1P11836 297 aa5.65□□□□□ -1.5
VPS13A-206ENST00000376646 NDUFV2P19404 249 aa5.65□□□□□ -1.5
VPS13A-206ENST00000376646 GRIPAP1Q4V328 841 aa5.65□□□□□ -1.5
VPS13A-206ENST00000376646 SPRYD7Q5W111 196 aa5.65□□□□□ -1.51
VPS13A-206ENST00000376646 NUTM1Q86Y26 1132 aa5.65□□□□□ -1.51
VPS13A-206ENST00000376646 AK7Q96M32 723 aa5.65□□□□□ -1.51
VPS13A-206ENST00000376646 PCDHGC3Q9UN70 934 aa5.65□□□□□ -1.51
VPS13A-206ENST00000376646 PDZRN3Q9UPQ7 1066 aa5.65□□□□□ -1.51
VPS13A-206ENST00000376646 SPIRE2Q8WWL2 714 aa5.64□□□□□ -1.51
VPS13A-206ENST00000376646 BEGAINQ9BUH8 593 aa5.64□□□□□ -1.51
VPS13A-206ENST00000376646 SALL2Q9Y467 1007 aaPredicted RBP5.64□□□□□ -1.51
VPS13A-206ENST00000376646 MOXD2PA6NHM9 499 aa5.63□□□□□ -1.51
VPS13A-206ENST00000376646 TNFRSF10AO00220 468 aa5.63□□□□□ -1.51
VPS13A-206ENST00000376646 ZNF697Q5TEC3 545 aa5.63□□□□□ -1.51
VPS13A-206ENST00000376646 USB1Q9BQ65 265 aaKnown RBP5.63□□□□□ -1.51
VPS13A-206ENST00000376646 USP46P62068 366 aa5.63□□□□□ -1.51
VPS13A-206ENST00000376646 FDX1P10109 184 aa5.62□□□□□ -1.51
VPS13A-206ENST00000376646 PDE4DQ08499 809 aa5.62□□□□□ -1.51
VPS13A-206ENST00000376646 Q3C1V9 767 aa5.62□□□□□ -1.51
VPS13A-206ENST00000376646 MSS51Q4VC12 460 aa5.62□□□□□ -1.51
VPS13A-206ENST00000376646 BCANQ96GW7 911 aa5.62□□□□□ -1.51
VPS13A-206ENST00000376646 ZNF598Q86UK7 904 aaKnown RBP5.62□□□□□ -1.51
VPS13A-206ENST00000376646 FOXC1Q12948 553 aa5.61□□□□□ -1.51
VPS13A-206ENST00000376646 TMEM151AQ8N4L1 468 aa5.61□□□□□ -1.51
VPS13A-206ENST00000376646 C6orf229H3BNL8 230 aa5.6□□□□□ -1.51
VPS13A-206ENST00000376646 TBC1D2Q9BYX2 928 aa5.6□□□□□ -1.51
VPS13A-206ENST00000376646 MMP16P51512 607 aa5.6□□□□□ -1.51
VPS13A-206ENST00000376646 CCDC24Q8N4L8 307 aa5.6□□□□□ -1.51
VPS13A-206ENST00000376646 DXOO77932 396 aaKnown RBP5.59□□□□□ -1.51
VPS13A-206ENST00000376646 PCDHB15Q9Y5E8 787 aa5.59□□□□□ -1.51
VPS13A-206ENST00000376646 GDF9O60383 454 aa5.59□□□□□ -1.51
VPS13A-206ENST00000376646 DGAT1O75907 488 aa5.59□□□□□ -1.51
VPS13A-206ENST00000376646 PKD2L1Q9P0L9 805 aa5.59□□□□□ -1.51
VPS13A-206ENST00000376646 CSPP1Q1MSJ5 1256 aa5.58□□□□□ -1.52
VPS13A-206ENST00000376646 GPBP1L1Q9HC44 474 aaPredicted RBP5.58□□□□□ -1.52
VPS13A-206ENST00000376646 ZSCAN1Q8NBB4 408 aa5.58□□□□□ -1.52
VPS13A-206ENST00000376646 RETREG3Q86VR2 466 aa5.57□□□□□ -1.52
VPS13A-206ENST00000376646 JUNDP17535 347 aa5.57□□□□□ -1.52
VPS13A-206ENST00000376646 RPIAP49247 311 aa5.57□□□□□ -1.52
VPS13A-206ENST00000376646 PTCRAQ6ISU1 281 aaPredicted RBP5.57□□□□□ -1.52
VPS13A-206ENST00000376646 RSBN1LQ6PCB5 846 aaPredicted RBP5.57□□□□□ -1.52
VPS13A-206ENST00000376646 ZBTB24O43167 697 aaPredicted RBP5.56□□□□□ -1.52
VPS13A-206ENST00000376646 TRIM32Q13049 653 aa5.56□□□□□ -1.52
VPS13A-206ENST00000376646 CABLES1Q8TDN4 633 aa5.56□□□□□ -1.52
VPS13A-206ENST00000376646 LIMD1Q9UGP4 676 aa5.56□□□□□ -1.52
VPS13A-206ENST00000376646 FAM187AA6NFU0 413 aa5.55□□□□□ -1.52
VPS13A-206ENST00000376646 CD2BP2O95400 341 aaKnown RBP5.55□□□□□ -1.52
VPS13A-206ENST00000376646 PRR7Q8TB68 274 aa5.55□□□□□ -1.52
VPS13A-206ENST00000376646 PRR20EP86478 221 aa5.55□□□□□ -1.52
VPS13A-206ENST00000376646 PRR20CP86479 221 aa5.55□□□□□ -1.52
VPS13A-206ENST00000376646 PRR20DP86480 221 aa5.55□□□□□ -1.52
VPS13A-206ENST00000376646 PRR20BP86481 221 aa5.55□□□□□ -1.52
VPS13A-206ENST00000376646 PRR20AP86496 221 aa5.55□□□□□ -1.52
VPS13A-206ENST00000376646 MTMR2Q13614 643 aa5.55□□□□□ -1.52
VPS13A-206ENST00000376646 MYSM1Q5VVJ2 828 aa5.55□□□□□ -1.52
VPS13A-206ENST00000376646 RIC3Q7Z5B4 369 aa5.55□□□□□ -1.52
VPS13A-206ENST00000376646 NUDT12Q9BQG2 462 aa5.55□□□□□ -1.52
VPS13A-206ENST00000376646 CFAP99D6REC4 459 aa5.54□□□□□ -1.52
VPS13A-206ENST00000376646 QPCTQ16769 361 aa5.54□□□□□ -1.52
VPS13A-206ENST00000376646 SPTLC1O15269 473 aa5.54□□□□□ -1.52
VPS13A-206ENST00000376646 HRCP23327 699 aa5.54□□□□□ -1.52
VPS13A-206ENST00000376646 LORP23490 312 aaPredicted RBP5.54□□□□□ -1.52
VPS13A-206ENST00000376646 SKOR1P84550 965 aa5.54□□□□□ -1.52
VPS13A-206ENST00000376646 PKDCCQ504Y2 493 aa5.54□□□□□ -1.52
VPS13A-206ENST00000376646 GOLGA2P5Q9HBQ8 144 aa5.53□□□□□ -1.52
VPS13A-206ENST00000376646 POLR3EQ9NVU0 708 aa5.53□□□□□ -1.52
VPS13A-206ENST00000376646 ST8SIA5O15466 376 aa5.53□□□□□ -1.52
VPS13A-206ENST00000376646 FOXK2Q01167 660 aa5.53□□□□□ -1.52
VPS13A-206ENST00000376646 MRGPRX2Q96LB1 330 aa5.53□□□□□ -1.52
VPS13A-206ENST00000376646 MYT1Q01538 1121 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 175.4 ms