RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 UGGT1Q9NYU2 1555 aa27.05■■□□□ 1.92
UPF3A-202ENST00000375299 RARSP54136 660 aaKnown RBP27.05■■□□□ 1.92
UPF3A-202ENST00000375299 ANTXR1Q9H6X2 564 aa27.05■■□□□ 1.92
UPF3A-202ENST00000375299 IQSEC2Q5JU85 1478 aa27.04■■□□□ 1.92
UPF3A-202ENST00000375299 UPF2Q9HAU5 1272 aaKnown RBP27.04■■□□□ 1.92
UPF3A-202ENST00000375299 IFT172Q9UG01 1749 aa27.03■■□□□ 1.92
UPF3A-202ENST00000375299 TBC1D32Q96NH3 1257 aa27.02■■□□□ 1.92
UPF3A-202ENST00000375299 KIF1BO60333 1816 aa27.02■■□□□ 1.92
UPF3A-202ENST00000375299 ASXL2Q76L83 1435 aa27.01■■□□□ 1.92
UPF3A-202ENST00000375299 EFCAB6Q5THR3 1501 aa27.01■■□□□ 1.91
UPF3A-202ENST00000375299 SBNO2Q9Y2G9 1366 aa27.01■■□□□ 1.91
UPF3A-202ENST00000375299 RUNDC1Q96C34 613 aa27.01■■□□□ 1.91
UPF3A-202ENST00000375299 PCDHB15Q9Y5E8 787 aa27.01■■□□□ 1.91
UPF3A-202ENST00000375299 KIDINS220Q9ULH0 1771 aa26.99■■□□□ 1.91
UPF3A-202ENST00000375299 L1TD1Q5T7N2 865 aaKnown RBP26.99■■□□□ 1.91
UPF3A-202ENST00000375299 PDZRN3Q9UPQ7 1066 aa26.99■■□□□ 1.91
UPF3A-202ENST00000375299 ADGRF5Q8IZF2 1346 aa26.99■■□□□ 1.91
UPF3A-202ENST00000375299 PHF23Q9BUL5 403 aaPredicted RBP26.98■■□□□ 1.91
UPF3A-202ENST00000375299 RSPH6AQ9H0K4 717 aa26.98■■□□□ 1.91
UPF3A-202ENST00000375299 RLBP1P12271 317 aa26.98■■□□□ 1.91
UPF3A-202ENST00000375299 NEUROD2Q15784 382 aa26.97■■□□□ 1.91
UPF3A-202ENST00000375299 NSD3Q9BZ95 1437 aa26.97■■□□□ 1.91
UPF3A-202ENST00000375299 PPRC1Q5VV67 1664 aaKnown RBP26.97■■□□□ 1.91
UPF3A-202ENST00000375299 WDR63Q8IWG1 891 aa26.97■■□□□ 1.91
UPF3A-202ENST00000375299 TBC1D2Q9BYX2 928 aa26.97■■□□□ 1.91
UPF3A-202ENST00000375299 RRP7AQ9Y3A4 280 aaKnown RBP26.97■■□□□ 1.91
UPF3A-202ENST00000375299 TNNQ9UQP3 1299 aa26.96■■□□□ 1.91
UPF3A-202ENST00000375299 TCP11L2Q8N4U5 519 aa26.95■■□□□ 1.91
UPF3A-202ENST00000375299 MORC1Q86VD1 984 aa26.95■■□□□ 1.9
UPF3A-202ENST00000375299 MROH2AA6NES4 1674 aa26.95■■□□□ 1.9
UPF3A-202ENST00000375299 EIF5BO60841 1220 aaKnown RBP26.94■■□□□ 1.9
UPF3A-202ENST00000375299 RWDD1Q9H446 243 aaPredicted RBP26.94■■□□□ 1.9
UPF3A-202ENST00000375299 NRXN1Q9ULB1 1477 aa26.93■■□□□ 1.9
UPF3A-202ENST00000375299 LMTK2Q8IWU2 1503 aa26.93■■□□□ 1.9
UPF3A-202ENST00000375299 ZC3H13Q5T200 1668 aaKnown RBP26.93■■□□□ 1.9
UPF3A-202ENST00000375299 ZNF518AQ6AHZ1 1483 aa26.91■■□□□ 1.9
UPF3A-202ENST00000375299 USP32Q8NFA0 1604 aa26.91■■□□□ 1.9
UPF3A-202ENST00000375299 CCDC27Q2M243 656 aa26.91■■□□□ 1.9
UPF3A-202ENST00000375299 SETBP1Q9Y6X0 1596 aa26.91■■□□□ 1.9
UPF3A-202ENST00000375299 BCL2L13Q9BXK5 485 aa26.9■■□□□ 1.9
UPF3A-202ENST00000375299 QRICH2Q9H0J4 1663 aa26.88■■□□□ 1.89
UPF3A-202ENST00000375299 TNNT2P45379 298 aaPredicted RBP26.87■■□□□ 1.89
UPF3A-202ENST00000375299 ADGRB3O60242 1522 aa26.86■■□□□ 1.89
UPF3A-202ENST00000375299 MVPQ14764 893 aaKnown RBP26.86■■□□□ 1.89
UPF3A-202ENST00000375299 MYH16Q9H6N6 1097 aa26.85■■□□□ 1.89
UPF3A-202ENST00000375299 RRAGDQ9NQL2 400 aaPredicted RBP26.85■■□□□ 1.89
UPF3A-202ENST00000375299 NCBP3Q53F19 620 aaKnown RBP26.84■■□□□ 1.89
UPF3A-202ENST00000375299 NOS1P29475 1434 aa26.84■■□□□ 1.89
UPF3A-202ENST00000375299 UBE2Q2Q8WVN8 375 aa26.83■■□□□ 1.89
UPF3A-202ENST00000375299 CFAP53Q96M91 514 aa26.83■■□□□ 1.88
UPF3A-202ENST00000375299 MCM4P33991 863 aa26.82■■□□□ 1.88
UPF3A-202ENST00000375299 SLC12A5Q9H2X9 1139 aa26.82■■□□□ 1.88
UPF3A-202ENST00000375299 ADGRB2O60241 1585 aa26.82■■□□□ 1.88
UPF3A-202ENST00000375299 MTHFSP49914 203 aa26.82■■□□□ 1.88
UPF3A-202ENST00000375299 ZKSCAN2Q63HK3 967 aa26.81■■□□□ 1.88
UPF3A-202ENST00000375299 FSD2A1L4K1 749 aa26.8■■□□□ 1.88
UPF3A-202ENST00000375299 GOLGA6L3A6NEY3 463 aa26.8■■□□□ 1.88
UPF3A-202ENST00000375299 NPATQ14207 1427 aa26.8■■□□□ 1.88
UPF3A-202ENST00000375299 C22orf23Q9BZE7 217 aa26.79■■□□□ 1.88
UPF3A-202ENST00000375299 POGZQ7Z3K3 1410 aa26.79■■□□□ 1.88
UPF3A-202ENST00000375299 FRMPD1Q5SYB0 1578 aa26.79■■□□□ 1.88
UPF3A-202ENST00000375299 CHGAP10645 457 aaKnown RBP26.78■■□□□ 1.88
UPF3A-202ENST00000375299 DZIP1LQ8IYY4 767 aaKnown RBP26.78■■□□□ 1.88
UPF3A-202ENST00000375299 SPRYD3Q8NCJ5 442 aa26.78■■□□□ 1.88
UPF3A-202ENST00000375299 CHMP5Q9NZZ3 219 aa26.78■■□□□ 1.88
UPF3A-202ENST00000375299 FTSJ3Q8IY81 847 aaKnown RBP26.78■■□□□ 1.88
UPF3A-202ENST00000375299 XRCC6P12956 609 aaKnown RBP eCLIP26.77■■□□□ 1.88
UPF3A-202ENST00000375299 TRAK1Q9UPV9 953 aa26.77■■□□□ 1.88
UPF3A-202ENST00000375299 MLH3Q9UHC1 1453 aa26.77■■□□□ 1.88
UPF3A-202ENST00000375299 CFAP74Q9C0B2 1584 aa26.77■■□□□ 1.88
UPF3A-202ENST00000375299 PPLO60437 1756 aa26.77■■□□□ 1.88
UPF3A-202ENST00000375299 NPM1P06748 294 aaKnown RBP eCLIP26.77■■□□□ 1.88
UPF3A-202ENST00000375299 CD109Q6YHK3 1445 aa26.76■■□□□ 1.88
UPF3A-202ENST00000375299 CT47B1P0C2W7 299 aaPredicted RBP26.76■■□□□ 1.87
UPF3A-202ENST00000375299 ADGRB1O14514 1584 aa26.75■■□□□ 1.87
UPF3A-202ENST00000375299 MFAP1P55081 439 aaKnown RBP26.75■■□□□ 1.87
UPF3A-202ENST00000375299 C14orf93Q9H972 538 aaKnown RBP26.75■■□□□ 1.87
UPF3A-202ENST00000375299 CFAP65Q6ZU64 1925 aaKnown RBP26.74■■□□□ 1.87
UPF3A-202ENST00000375299 GGT6Q6P531 493 aa26.73■■□□□ 1.87
UPF3A-202ENST00000375299 HECW2Q9P2P5 1572 aa26.73■■□□□ 1.87
UPF3A-202ENST00000375299 HDAC1Q13547 482 aaPredicted RBP26.73■■□□□ 1.87
UPF3A-202ENST00000375299 ARXQ96QS3 562 aa26.72■■□□□ 1.87
UPF3A-202ENST00000375299 NSD2O96028 1365 aa26.72■■□□□ 1.87
UPF3A-202ENST00000375299 U2AF1L5P0DN76 240 aaPredicted RBP26.71■■□□□ 1.87
UPF3A-202ENST00000375299 U2AF1Q01081 240 aaKnown RBP eCLIP26.71■■□□□ 1.87
UPF3A-202ENST00000375299 TRAK2O60296 914 aa26.7■■□□□ 1.86
UPF3A-202ENST00000375299 GZF1Q9H116 711 aaPredicted RBP26.7■■□□□ 1.86
UPF3A-202ENST00000375299 SMC4Q9NTJ3 1288 aa26.69■■□□□ 1.86
UPF3A-202ENST00000375299 ABCC3O15438 1527 aa26.69■■□□□ 1.86
UPF3A-202ENST00000375299 DDX19BQ9UMR2 479 aa26.69■■□□□ 1.86
UPF3A-202ENST00000375299 RPGRIP1LQ68CZ1 1315 aa26.68■■□□□ 1.86
UPF3A-202ENST00000375299 TRIM27P14373 513 aa26.68■■□□□ 1.86
UPF3A-202ENST00000375299 HSCBQ8IWL3 235 aa26.68■■□□□ 1.86
UPF3A-202ENST00000375299 TSR2Q969E8 191 aaKnown RBP26.68■■□□□ 1.86
UPF3A-202ENST00000375299 PANK2Q9BZ23 570 aa26.67■■□□□ 1.86
UPF3A-202ENST00000375299 ANKRD36BQ8N2N9 1353 aa26.67■■□□□ 1.86
UPF3A-202ENST00000375299 TMEM132EQ6IEE7 984 aa26.66■■□□□ 1.86
UPF3A-202ENST00000375299 EXOSC9Q06265 439 aaKnown RBP26.65■■□□□ 1.86
UPF3A-202ENST00000375299 SMC5Q8IY18 1101 aa26.65■■□□□ 1.86
UPF3A-202ENST00000375299 NCOA3Q9Y6Q9 1424 aa26.65■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms