RNA–Protein interactions for RNA: ENST00000374199.8

PRPF4-202, Transcript of pre-mRNA processing factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PRPF4, Length 3,212 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF4-202ENST00000374199 AKAP12Q02952 1782 aa17.06■□□□□ 0.32
PRPF4-202ENST00000374199 NSD2O96028 1365 aa17.06■□□□□ 0.32
PRPF4-202ENST00000374199 POLR3GLQ9BT43 218 aa17.06■□□□□ 0.32
PRPF4-202ENST00000374199 MON2Q7Z3U7 1717 aa17.06■□□□□ 0.32
PRPF4-202ENST00000374199 TRAK1Q9UPV9 953 aa17.04■□□□□ 0.32
PRPF4-202ENST00000374199 XRN1Q8IZH2 1706 aaKnown RBP17.04■□□□□ 0.32
PRPF4-202ENST00000374199 PPP2R1AP30153 589 aa17.04■□□□□ 0.32
PRPF4-202ENST00000374199 FAM9BQ8IZU0 186 aa17.04■□□□□ 0.32
PRPF4-202ENST00000374199 PLEKHG1Q9ULL1 1385 aa17.04■□□□□ 0.32
PRPF4-202ENST00000374199 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.04■□□□□ 0.32
PRPF4-202ENST00000374199 TMC1Q8TDI8 760 aa17.03■□□□□ 0.32
PRPF4-202ENST00000374199 EVC2Q86UK5 1308 aa17.03■□□□□ 0.32
PRPF4-202ENST00000374199 KNSTRNQ9Y448 316 aa17.02■□□□□ 0.32
PRPF4-202ENST00000374199 ATP7BP35670 1465 aa17.02■□□□□ 0.32
PRPF4-202ENST00000374199 POLR3AO14802 1390 aaPredicted RBP17.02■□□□□ 0.32
PRPF4-202ENST00000374199 CDC42BPGQ6DT37 1551 aa17.02■□□□□ 0.32
PRPF4-202ENST00000374199 NRKQ7Z2Y5 1582 aa17.02■□□□□ 0.32
PRPF4-202ENST00000374199 NSD3Q9BZ95 1437 aa17.01■□□□□ 0.31
PRPF4-202ENST00000374199 ATAD2Q6PL18 1390 aa17.01■□□□□ 0.31
PRPF4-202ENST00000374199 SIPA1L2Q9P2F8 1722 aaPredicted RBP17■□□□□ 0.31
PRPF4-202ENST00000374199 METP08581 1390 aa16.99■□□□□ 0.31
PRPF4-202ENST00000374199 CEP170BQ9Y4F5 1589 aaPredicted RBP16.98■□□□□ 0.31
PRPF4-202ENST00000374199 CC2D1BQ5T0F9 858 aaKnown RBP16.98■□□□□ 0.31
PRPF4-202ENST00000374199 ERICH6BQ5W0A0 696 aa16.98■□□□□ 0.31
PRPF4-202ENST00000374199 COL3A1P02461 1466 aaPredicted RBP16.97■□□□□ 0.31
PRPF4-202ENST00000374199 IQSEC2Q5JU85 1478 aa16.96■□□□□ 0.31
PRPF4-202ENST00000374199 CPSF1Q10570 1443 aaKnown RBP16.96■□□□□ 0.31
PRPF4-202ENST00000374199 NUTM2DQ5VT03 806 aaPredicted RBP16.96■□□□□ 0.31
PRPF4-202ENST00000374199 ZNF521Q96K83 1311 aa16.96■□□□□ 0.3
PRPF4-202ENST00000374199 A0A1W2PP64 1363 aa16.96■□□□□ 0.3
PRPF4-202ENST00000374199 PTCH1Q13635 1447 aa16.95■□□□□ 0.3
PRPF4-202ENST00000374199 ITSN1Q15811 1721 aa16.95■□□□□ 0.3
PRPF4-202ENST00000374199 USP54Q70EL1 1684 aa16.94■□□□□ 0.3
PRPF4-202ENST00000374199 NUDCQ9Y266 331 aa16.94■□□□□ 0.3
PRPF4-202ENST00000374199 PDE3BQ13370 1112 aa16.93■□□□□ 0.3
PRPF4-202ENST00000374199 PLEKHH1Q9ULM0 1364 aa16.93■□□□□ 0.3
PRPF4-202ENST00000374199 NALCNQ8IZF0 1738 aa16.93■□□□□ 0.3
PRPF4-202ENST00000374199 PRAM1Q96QH2 718 aa16.92■□□□□ 0.3
PRPF4-202ENST00000374199 SLC12A5Q9H2X9 1139 aa16.92■□□□□ 0.3
PRPF4-202ENST00000374199 MLECQ14165 292 aa16.92■□□□□ 0.3
PRPF4-202ENST00000374199 PTPRUQ92729 1446 aa16.92■□□□□ 0.3
PRPF4-202ENST00000374199 HDGFP51858 240 aaKnown RBP16.91■□□□□ 0.3
PRPF4-202ENST00000374199 CGNL1Q0VF96 1302 aa16.9■□□□□ 0.3
PRPF4-202ENST00000374199 NCBP3Q53F19 620 aaKnown RBP16.89■□□□□ 0.29
PRPF4-202ENST00000374199 CHD2O14647 1828 aaKnown RBP16.89■□□□□ 0.29
PRPF4-202ENST00000374199 ESF1Q9H501 851 aaKnown RBP16.87■□□□□ 0.29
PRPF4-202ENST00000374199 PNPLA6Q8IY17 1366 aa16.87■□□□□ 0.29
PRPF4-202ENST00000374199 DNAJC5Q9H3Z4 198 aa16.87■□□□□ 0.29
PRPF4-202ENST00000374199 LTKP29376 864 aa16.87■□□□□ 0.29
PRPF4-202ENST00000374199 ADAMTS8Q9UP79 889 aa16.87■□□□□ 0.29
PRPF4-202ENST00000374199 PIK3R4Q99570 1358 aa16.86■□□□□ 0.29
PRPF4-202ENST00000374199 ROBO2Q9HCK4 1378 aa16.86■□□□□ 0.29
PRPF4-202ENST00000374199 CABP2Q9NPB3 220 aa16.86■□□□□ 0.29
PRPF4-202ENST00000374199 STAG3Q9UJ98 1225 aa16.86■□□□□ 0.29
PRPF4-202ENST00000374199 LRRC7Q96NW7 1537 aa16.85■□□□□ 0.29
PRPF4-202ENST00000374199 FMN2Q9NZ56 1722 aa16.85■□□□□ 0.29
PRPF4-202ENST00000374199 FKBP8Q14318 412 aa16.85■□□□□ 0.29
PRPF4-202ENST00000374199 NGEFQ8N5V2 710 aa16.85■□□□□ 0.29
PRPF4-202ENST00000374199 TRMT2AQ8IZ69 625 aaKnown RBP16.84■□□□□ 0.29
PRPF4-202ENST00000374199 EDC4Q6P2E9 1401 aaKnown RBP16.84■□□□□ 0.29
PRPF4-202ENST00000374199 CDK19Q9BWU1 502 aa16.84■□□□□ 0.29
PRPF4-202ENST00000374199 MARF1Q9Y4F3 1742 aaKnown RBP16.83■□□□□ 0.28
PRPF4-202ENST00000374199 NWD1Q149M9 1564 aa16.82■□□□□ 0.28
PRPF4-202ENST00000374199 PHF23Q9BUL5 403 aaPredicted RBP16.82■□□□□ 0.28
PRPF4-202ENST00000374199 TBX22Q9Y458 520 aa16.82■□□□□ 0.28
PRPF4-202ENST00000374199 SSH2Q76I76 1423 aa16.82■□□□□ 0.28
PRPF4-202ENST00000374199 STK26Q9P289 416 aa16.81■□□□□ 0.28
PRPF4-202ENST00000374199 SETD1BQ9UPS6 1966 aaKnown RBP16.81■□□□□ 0.28
PRPF4-202ENST00000374199 WASLO00401 505 aaPredicted RBP16.81■□□□□ 0.28
PRPF4-202ENST00000374199 MINK1Q8N4C8 1332 aaPredicted RBP16.8■□□□□ 0.28
PRPF4-202ENST00000374199 NKTRP30414 1462 aaKnown RBP16.8■□□□□ 0.28
PRPF4-202ENST00000374199 PPIP5K1Q6PFW1 1433 aa16.8■□□□□ 0.28
PRPF4-202ENST00000374199 TERF2IPQ9NYB0 399 aa16.79■□□□□ 0.28
PRPF4-202ENST00000374199 POGKQ9P215 609 aa16.79■□□□□ 0.28
PRPF4-202ENST00000374199 MAP2P11137 1827 aaKnown RBP16.79■□□□□ 0.28
PRPF4-202ENST00000374199 WAPLQ7Z5K2 1190 aa16.79■□□□□ 0.28
PRPF4-202ENST00000374199 FYB1O15117 783 aa16.78■□□□□ 0.28
PRPF4-202ENST00000374199 AATKQ6ZMQ8 1374 aa16.78■□□□□ 0.28
PRPF4-202ENST00000374199 CEBPAP49715 358 aaPredicted RBP16.78■□□□□ 0.28
PRPF4-202ENST00000374199 RGPD1P0DJD0 1748 aa16.77■□□□□ 0.28
PRPF4-202ENST00000374199 NEFLP07196 543 aa16.77■□□□□ 0.28
PRPF4-202ENST00000374199 RGPD8O14715 1765 aaPredicted RBP16.76■□□□□ 0.27
PRPF4-202ENST00000374199 CNGB1Q14028 1251 aaPredicted RBP16.76■□□□□ 0.27
PRPF4-202ENST00000374199 MORC1Q86VD1 984 aa16.76■□□□□ 0.27
PRPF4-202ENST00000374199 CDK12Q9NYV4 1490 aaPredicted RBP16.76■□□□□ 0.27
PRPF4-202ENST00000374199 SRPK2P78362 688 aaKnown RBP16.75■□□□□ 0.27
PRPF4-202ENST00000374199 THEMISQ8N1K5 641 aaPredicted RBP16.75■□□□□ 0.27
PRPF4-202ENST00000374199 ANKARQ7Z5J8 1434 aa16.75■□□□□ 0.27
PRPF4-202ENST00000374199 PRR36Q9H6K5 1346 aa16.75■□□□□ 0.27
PRPF4-202ENST00000374199 WDR43Q15061 677 aaKnown RBP eCLIP16.74■□□□□ 0.27
PRPF4-202ENST00000374199 OVOS2A0A0J9YW53 1432 aa16.73■□□□□ 0.27
PRPF4-202ENST00000374199 OVOS2Q6IE36 1432 aa16.73■□□□□ 0.27
PRPF4-202ENST00000374199 CCDC27Q2M243 656 aa16.73■□□□□ 0.27
PRPF4-202ENST00000374199 CABP1Q9NZU7 370 aa16.73■□□□□ 0.27
PRPF4-202ENST00000374199 DUSP27Q5VZP5 1158 aa16.72■□□□□ 0.27
PRPF4-202ENST00000374199 TXNDC2Q86VQ3 553 aa16.72■□□□□ 0.27
PRPF4-202ENST00000374199 PLEKHG3A1L390 1219 aa16.72■□□□□ 0.27
PRPF4-202ENST00000374199 SAFB2Q14151 953 aaKnown RBP eCLIP16.72■□□□□ 0.27
PRPF4-202ENST00000374199 PIK3C2AO00443 1686 aa16.72■□□□□ 0.27
PRPF4-202ENST00000374199 TRHP20396 242 aaPredicted RBP16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 145.9 ms