RNA–Protein interactions for RNA: ENST00000373474.8

LMX1B-202, Transcript of LIM homeobox transcription factor 1 beta, humanhuman

TSL 1 (best) BASIC

Gene LMX1B, Length 5,797 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1B-202ENST00000373474 MRE11P49959 708 aa17.22■□□□□ 0.35
LMX1B-202ENST00000373474 NBPF8Q3BBV2 869 aa17.22■□□□□ 0.35
LMX1B-202ENST00000373474 TSPYL4Q9UJ04 414 aa17.22■□□□□ 0.35
LMX1B-202ENST00000373474 NINLQ9Y2I6 1382 aa17.22■□□□□ 0.35
LMX1B-202ENST00000373474 HMOX1P09601 288 aa17.22■□□□□ 0.35
LMX1B-202ENST00000373474 NECTIN2Q92692 538 aa17.22■□□□□ 0.35
LMX1B-202ENST00000373474 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.22■□□□□ 0.35
LMX1B-202ENST00000373474 CABP2Q9NPB3 220 aa17.22■□□□□ 0.35
LMX1B-202ENST00000373474 C9orf84Q5VXU9 1444 aa17.22■□□□□ 0.35
LMX1B-202ENST00000373474 HSP90AB4PQ58FF6 505 aa17.21■□□□□ 0.35
LMX1B-202ENST00000373474 GGNBP2Q9H3C7 697 aa17.21■□□□□ 0.35
LMX1B-202ENST00000373474 SYNJ2O15056 1496 aa17.21■□□□□ 0.35
LMX1B-202ENST00000373474 PDE3AQ14432 1141 aa17.21■□□□□ 0.35
LMX1B-202ENST00000373474 SMC3Q9UQE7 1217 aa17.21■□□□□ 0.35
LMX1B-202ENST00000373474 TCP11L2Q8N4U5 519 aa17.21■□□□□ 0.35
LMX1B-202ENST00000373474 DDX58O95786 925 aaKnown RBP17.21■□□□□ 0.34
LMX1B-202ENST00000373474 MTHFSP49914 203 aa17.2■□□□□ 0.34
LMX1B-202ENST00000373474 TMX4Q9H1E5 349 aaPredicted RBP17.2■□□□□ 0.34
LMX1B-202ENST00000373474 IPO7O95373 1038 aaKnown RBP17.2■□□□□ 0.34
LMX1B-202ENST00000373474 TTC5Q8N0Z6 440 aa17.2■□□□□ 0.34
LMX1B-202ENST00000373474 DAPK1P53355 1430 aa17.2■□□□□ 0.34
LMX1B-202ENST00000373474 PDE4CQ08493 712 aa17.19■□□□□ 0.34
LMX1B-202ENST00000373474 SYNE3Q6ZMZ3 975 aa17.19■□□□□ 0.34
LMX1B-202ENST00000373474 PDZRN3Q9UPQ7 1066 aa17.19■□□□□ 0.34
LMX1B-202ENST00000373474 ERC2O15083 957 aa17.19■□□□□ 0.34
LMX1B-202ENST00000373474 PNISRQ8TF01 805 aaKnown RBP17.19■□□□□ 0.34
LMX1B-202ENST00000373474 G3BP1Q13283 466 aaKnown RBP eCLIP17.19■□□□□ 0.34
LMX1B-202ENST00000373474 AKAP17AQ02040 695 aaKnown RBP17.19■□□□□ 0.34
LMX1B-202ENST00000373474 RUFY1Q96T51 708 aa17.18■□□□□ 0.34
LMX1B-202ENST00000373474 HSP90B2PQ58FF3 399 aa17.18■□□□□ 0.34
LMX1B-202ENST00000373474 ERBINQ96RT1 1412 aa17.18■□□□□ 0.34
LMX1B-202ENST00000373474 BICD2Q8TD16 824 aa17.18■□□□□ 0.34
LMX1B-202ENST00000373474 HOMER1Q86YM7 354 aa17.17■□□□□ 0.34
LMX1B-202ENST00000373474 FRAT2O75474 233 aaPredicted RBP17.17■□□□□ 0.34
LMX1B-202ENST00000373474 RDXP35241 583 aaKnown RBP17.17■□□□□ 0.34
LMX1B-202ENST00000373474 TRIM29Q14134 588 aa17.17■□□□□ 0.34
LMX1B-202ENST00000373474 CPLX2Q6PUV4 134 aaKnown RBP17.17■□□□□ 0.34
LMX1B-202ENST00000373474 CCDC191Q8NCU4 936 aa17.17■□□□□ 0.34
LMX1B-202ENST00000373474 BACH2Q9BYV9 841 aa17.17■□□□□ 0.34
LMX1B-202ENST00000373474 PES1O00541 588 aaKnown RBP17.17■□□□□ 0.34
LMX1B-202ENST00000373474 TRAK2O60296 914 aa17.16■□□□□ 0.34
LMX1B-202ENST00000373474 NBPF1Q3BBV0 1214 aa17.16■□□□□ 0.34
LMX1B-202ENST00000373474 CCDC39Q9UFE4 941 aa17.16■□□□□ 0.34
LMX1B-202ENST00000373474 VPS37CA5D8V6 355 aaPredicted RBP17.16■□□□□ 0.34
LMX1B-202ENST00000373474 MNS1Q8NEH6 495 aa17.16■□□□□ 0.34
LMX1B-202ENST00000373474 PLEKHH2Q8IVE3 1493 aa17.15■□□□□ 0.34
LMX1B-202ENST00000373474 ANKRD20A12PQ8NF67 263 aa17.15■□□□□ 0.34
LMX1B-202ENST00000373474 TMEM132EQ6IEE7 984 aa17.15■□□□□ 0.34
LMX1B-202ENST00000373474 NASPP49321 788 aaPredicted RBP17.15■□□□□ 0.34
LMX1B-202ENST00000373474 DCTN1Q14203 1278 aa17.15■□□□□ 0.34
LMX1B-202ENST00000373474 SASS6Q6UVJ0 657 aa17.15■□□□□ 0.34
LMX1B-202ENST00000373474 CFAP70Q5T0N1 1121 aa17.15■□□□□ 0.34
LMX1B-202ENST00000373474 GCC1Q96CN9 775 aa17.14■□□□□ 0.33
LMX1B-202ENST00000373474 HMGXB3Q12766 1538 aa17.14■□□□□ 0.33
LMX1B-202ENST00000373474 EXOSC9Q06265 439 aaKnown RBP17.14■□□□□ 0.33
LMX1B-202ENST00000373474 ERCC4Q92889 916 aaPredicted RBP17.13■□□□□ 0.33
LMX1B-202ENST00000373474 MARCH6O60337 910 aa17.13■□□□□ 0.33
LMX1B-202ENST00000373474 TROQ12816 1431 aaPredicted RBP17.13■□□□□ 0.33
LMX1B-202ENST00000373474 CPLX1O14810 134 aa17.13■□□□□ 0.33
LMX1B-202ENST00000373474 BCAR3O75815 825 aa17.13■□□□□ 0.33
LMX1B-202ENST00000373474 HOOK1Q9UJC3 728 aaKnown RBP17.13■□□□□ 0.33
LMX1B-202ENST00000373474 PCF11O94913 1555 aaKnown RBP17.12■□□□□ 0.33
LMX1B-202ENST00000373474 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.12■□□□□ 0.33
LMX1B-202ENST00000373474 UBTFL1P0CB47 393 aaPredicted RBP17.12■□□□□ 0.33
LMX1B-202ENST00000373474 NOB1Q9ULX3 412 aaKnown RBP17.12■□□□□ 0.33
LMX1B-202ENST00000373474 GTF2E1P29083 439 aaPredicted RBP17.12■□□□□ 0.33
LMX1B-202ENST00000373474 TOPBP1Q92547 1522 aa17.12■□□□□ 0.33
LMX1B-202ENST00000373474 LETM1O95202 739 aaPredicted RBP17.11■□□□□ 0.33
LMX1B-202ENST00000373474 WDR63Q8IWG1 891 aa17.11■□□□□ 0.33
LMX1B-202ENST00000373474 CNTROBQ8N137 903 aa17.11■□□□□ 0.33
LMX1B-202ENST00000373474 H0YHG0 523 aa17.11■□□□□ 0.33
LMX1B-202ENST00000373474 CT47B1P0C2W7 299 aaPredicted RBP17.11■□□□□ 0.33
LMX1B-202ENST00000373474 RABEP1Q15276 862 aa17.11■□□□□ 0.33
LMX1B-202ENST00000373474 PODXL2Q9NZ53 605 aa17.11■□□□□ 0.33
LMX1B-202ENST00000373474 CCDC184Q52MB2 194 aa17.1■□□□□ 0.33
LMX1B-202ENST00000373474 PRG4Q92954 1404 aaPredicted RBP17.1■□□□□ 0.33
LMX1B-202ENST00000373474 G3V3G9 751 aa17.1■□□□□ 0.33
LMX1B-202ENST00000373474 PSME1Q06323 249 aa17.1■□□□□ 0.33
LMX1B-202ENST00000373474 DCAF8Q5TAQ9 597 aa17.1■□□□□ 0.33
LMX1B-202ENST00000373474 TRDNQ13061 729 aa17.09■□□□□ 0.33
LMX1B-202ENST00000373474 R3HCC1Q9Y3T6 440 aaKnown RBP17.09■□□□□ 0.33
LMX1B-202ENST00000373474 NAIPQ13075 1403 aa17.09■□□□□ 0.33
LMX1B-202ENST00000373474 CCDC47Q96A33 483 aaKnown RBP17.09■□□□□ 0.33
LMX1B-202ENST00000373474 PSMA5P28066 241 aa17.09■□□□□ 0.33
LMX1B-202ENST00000373474 GNAI3P08754 354 aa17.09■□□□□ 0.33
LMX1B-202ENST00000373474 PRKAR2BP31323 418 aa17.08■□□□□ 0.33
LMX1B-202ENST00000373474 MCM2P49736 904 aa17.08■□□□□ 0.33
LMX1B-202ENST00000373474 CCDC73Q6ZRK6 1079 aa17.08■□□□□ 0.33
LMX1B-202ENST00000373474 IFT57Q9NWB7 429 aa17.08■□□□□ 0.33
LMX1B-202ENST00000373474 CCDC30Q5VVM6 783 aa17.08■□□□□ 0.33
LMX1B-202ENST00000373474 DNMBPQ6XZF7 1577 aa17.08■□□□□ 0.32
LMX1B-202ENST00000373474 MRC2Q9UBG0 1479 aa17.08■□□□□ 0.32
LMX1B-202ENST00000373474 POLA1P09884 1462 aaPredicted RBP17.08■□□□□ 0.32
LMX1B-202ENST00000373474 IFT140Q96RY7 1462 aa17.08■□□□□ 0.32
LMX1B-202ENST00000373474 HMGN5P82970 282 aaKnown RBP17.08■□□□□ 0.32
LMX1B-202ENST00000373474 TWISTNBQ3B726 338 aaPredicted RBP17.08■□□□□ 0.32
LMX1B-202ENST00000373474 PTPN23Q9H3S7 1636 aa17.07■□□□□ 0.32
LMX1B-202ENST00000373474 MBD3O95983 291 aa17.07■□□□□ 0.32
LMX1B-202ENST00000373474 EVA1CP58658 441 aa17.07■□□□□ 0.32
LMX1B-202ENST00000373474 CCDC173Q0VFZ6 552 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms