RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 ARID3AQ99856 593 aa17.4■□□□□ 0.38
USP49-201ENST00000373006 SCAPERQ9BY12 1400 aa17.39■□□□□ 0.38
USP49-201ENST00000373006 PLXNC1O60486 1568 aa17.39■□□□□ 0.37
USP49-201ENST00000373006 SLC12A5Q9H2X9 1139 aa17.38■□□□□ 0.37
USP49-201ENST00000373006 VIRMAQ69YN4 1812 aaKnown RBP17.38■□□□□ 0.37
USP49-201ENST00000373006 TRAPPC8Q9Y2L5 1435 aa17.38■□□□□ 0.37
USP49-201ENST00000373006 ERVK-7P63135 1459 aa17.37■□□□□ 0.37
USP49-201ENST00000373006 PNNQ9H307 717 aaKnown RBP17.37■□□□□ 0.37
USP49-201ENST00000373006 C22orf23Q9BZE7 217 aa17.37■□□□□ 0.37
USP49-201ENST00000373006 POLR3AO14802 1390 aaPredicted RBP17.37■□□□□ 0.37
USP49-201ENST00000373006 HSP90AA1P07900 732 aaKnown RBP17.36■□□□□ 0.37
USP49-201ENST00000373006 MTHFSP49914 203 aa17.36■□□□□ 0.37
USP49-201ENST00000373006 FTSJ3Q8IY81 847 aaKnown RBP17.36■□□□□ 0.37
USP49-201ENST00000373006 STAC3Q96MF2 364 aa17.35■□□□□ 0.37
USP49-201ENST00000373006 ERCC6L2Q5T890 1561 aa17.35■□□□□ 0.37
USP49-201ENST00000373006 TRAK2O60296 914 aa17.35■□□□□ 0.37
USP49-201ENST00000373006 TRAK1Q9UPV9 953 aa17.34■□□□□ 0.37
USP49-201ENST00000373006 KDM5AP29375 1690 aaKnown RBP17.34■□□□□ 0.37
USP49-201ENST00000373006 MVPQ14764 893 aaKnown RBP17.34■□□□□ 0.37
USP49-201ENST00000373006 TSR2Q969E8 191 aaKnown RBP17.34■□□□□ 0.37
USP49-201ENST00000373006 NSD3Q9BZ95 1437 aa17.33■□□□□ 0.37
USP49-201ENST00000373006 WDR63Q8IWG1 891 aa17.33■□□□□ 0.37
USP49-201ENST00000373006 FSD2A1L4K1 749 aa17.33■□□□□ 0.36
USP49-201ENST00000373006 CHMP5Q9NZZ3 219 aa17.32■□□□□ 0.36
USP49-201ENST00000373006 CLTCL1P53675 1640 aa17.32■□□□□ 0.36
USP49-201ENST00000373006 U2AF1L5P0DN76 240 aaPredicted RBP17.32■□□□□ 0.36
USP49-201ENST00000373006 U2AF1Q01081 240 aaKnown RBP eCLIP17.32■□□□□ 0.36
USP49-201ENST00000373006 AAMPQ13685 434 aa17.32■□□□□ 0.36
USP49-201ENST00000373006 DZIP1LQ8IYY4 767 aaKnown RBP17.32■□□□□ 0.36
USP49-201ENST00000373006 TRPM2O94759 1503 aa17.31■□□□□ 0.36
USP49-201ENST00000373006 ZKSCAN2Q63HK3 967 aa17.31■□□□□ 0.36
USP49-201ENST00000373006 PHF23Q9BUL5 403 aaPredicted RBP17.31■□□□□ 0.36
USP49-201ENST00000373006 SPHKAPQ2M3C7 1700 aa17.31■□□□□ 0.36
USP49-201ENST00000373006 PTPRTO14522 1441 aa17.3■□□□□ 0.36
USP49-201ENST00000373006 NUTM2DQ5VT03 806 aaPredicted RBP17.3■□□□□ 0.36
USP49-201ENST00000373006 PLCH2O75038 1416 aa17.3■□□□□ 0.36
USP49-201ENST00000373006 MYH16Q9H6N6 1097 aa17.3■□□□□ 0.36
USP49-201ENST00000373006 CEP152O94986 1710 aa17.29■□□□□ 0.36
USP49-201ENST00000373006 ITPRIPQ8IWB1 547 aa17.29■□□□□ 0.36
USP49-201ENST00000373006 UGGT1Q9NYU2 1555 aa17.29■□□□□ 0.36
USP49-201ENST00000373006 SMC4Q9NTJ3 1288 aa17.29■□□□□ 0.36
USP49-201ENST00000373006 CHD1O14646 1710 aa17.28■□□□□ 0.36
USP49-201ENST00000373006 TMEM132EQ6IEE7 984 aa17.28■□□□□ 0.36
USP49-201ENST00000373006 HSCBQ8IWL3 235 aa17.27■□□□□ 0.36
USP49-201ENST00000373006 CFAP53Q96M91 514 aa17.27■□□□□ 0.36
USP49-201ENST00000373006 EXOSC9Q06265 439 aaKnown RBP17.27■□□□□ 0.35
USP49-201ENST00000373006 TRIM27P14373 513 aa17.26■□□□□ 0.35
USP49-201ENST00000373006 KANK1Q14678 1352 aa17.25■□□□□ 0.35
USP49-201ENST00000373006 CLCN1P35523 988 aa17.25■□□□□ 0.35
USP49-201ENST00000373006 MRE11P49959 708 aa17.25■□□□□ 0.35
USP49-201ENST00000373006 SAFB2Q14151 953 aaKnown RBP eCLIP17.25■□□□□ 0.35
USP49-201ENST00000373006 SSH1Q8WYL5 1049 aa17.24■□□□□ 0.35
USP49-201ENST00000373006 RTEL1-TNFRSF6BF6WH68 1400 aa17.24■□□□□ 0.35
USP49-201ENST00000373006 ZMYM3Q14202 1370 aa17.24■□□□□ 0.35
USP49-201ENST00000373006 CCDC27Q2M243 656 aa17.24■□□□□ 0.35
USP49-201ENST00000373006 GRPEL1Q9HAV7 217 aa17.24■□□□□ 0.35
USP49-201ENST00000373006 FOXD4L1Q9NU39 408 aa17.24■□□□□ 0.35
USP49-201ENST00000373006 U2SURPO15042 1029 aaKnown RBP17.24■□□□□ 0.35
USP49-201ENST00000373006 IQSEC2Q5JU85 1478 aa17.23■□□□□ 0.35
USP49-201ENST00000373006 GGT6Q6P531 493 aa17.23■□□□□ 0.35
USP49-201ENST00000373006 NOB1Q9ULX3 412 aaKnown RBP17.23■□□□□ 0.35
USP49-201ENST00000373006 ZNF692Q9BU19 519 aaPredicted RBP17.22■□□□□ 0.35
USP49-201ENST00000373006 SHPRHQ149N8 1683 aa17.22■□□□□ 0.35
USP49-201ENST00000373006 LNPKQ9C0E8 428 aa17.22■□□□□ 0.35
USP49-201ENST00000373006 TMEM57Q8N5G2 664 aa17.21■□□□□ 0.35
USP49-201ENST00000373006 HDAC1Q13547 482 aaPredicted RBP17.21■□□□□ 0.35
USP49-201ENST00000373006 DDX19BQ9UMR2 479 aa17.21■□□□□ 0.35
USP49-201ENST00000373006 ABCC1P33527 1531 aa17.21■□□□□ 0.35
USP49-201ENST00000373006 ABCA6Q8N139 1617 aa17.21■□□□□ 0.35
USP49-201ENST00000373006 ATF7IPQ6VMQ6 1270 aa17.2■□□□□ 0.34
USP49-201ENST00000373006 TNPO1Q92973 898 aaKnown RBP17.2■□□□□ 0.34
USP49-201ENST00000373006 DDX11L8A8MPP1 907 aa17.2■□□□□ 0.34
USP49-201ENST00000373006 NPM1P06748 294 aaKnown RBP eCLIP17.2■□□□□ 0.34
USP49-201ENST00000373006 GAS2L3Q86XJ1 694 aa17.2■□□□□ 0.34
USP49-201ENST00000373006 ERBB4Q15303 1308 aa17.19■□□□□ 0.34
USP49-201ENST00000373006 ZNF518AQ6AHZ1 1483 aa17.19■□□□□ 0.34
USP49-201ENST00000373006 NOS1P29475 1434 aa17.19■□□□□ 0.34
USP49-201ENST00000373006 MAP3K4Q9Y6R4 1608 aa17.18■□□□□ 0.34
USP49-201ENST00000373006 HSP90AB1P08238 724 aaKnown RBP17.18■□□□□ 0.34
USP49-201ENST00000373006 SMC5Q8IY18 1101 aa17.18■□□□□ 0.34
USP49-201ENST00000373006 ESPNB1AK53 854 aa17.18■□□□□ 0.34
USP49-201ENST00000373006 TMPOP42166 694 aaKnown RBP17.16■□□□□ 0.34
USP49-201ENST00000373006 CABP2Q9NPB3 220 aa17.16■□□□□ 0.34
USP49-201ENST00000373006 TRIM35Q9UPQ4 493 aa17.16■□□□□ 0.34
USP49-201ENST00000373006 TRIM44Q96DX7 344 aaPredicted RBP17.16■□□□□ 0.34
USP49-201ENST00000373006 ZBTB40Q9NUA8 1239 aa17.16■□□□□ 0.34
USP49-201ENST00000373006 SBNO2Q9Y2G9 1366 aa17.16■□□□□ 0.34
USP49-201ENST00000373006 KIAA1210Q9ULL0 1709 aa17.15■□□□□ 0.34
USP49-201ENST00000373006 ZFYVE16Q7Z3T8 1539 aa17.15■□□□□ 0.34
USP49-201ENST00000373006 MYOM2P54296 1465 aa17.15■□□□□ 0.34
USP49-201ENST00000373006 CD2BP2O95400 341 aaKnown RBP17.15■□□□□ 0.34
USP49-201ENST00000373006 DDIT3P35638 169 aa17.15■□□□□ 0.34
USP49-201ENST00000373006 OSCARQ8IYS5 282 aa17.14■□□□□ 0.33
USP49-201ENST00000373006 GGNBP2Q9H3C7 697 aa17.14■□□□□ 0.33
USP49-201ENST00000373006 TET3O43151 1660 aa17.14■□□□□ 0.33
USP49-201ENST00000373006 RBM25P49756 843 aaKnown RBP17.14■□□□□ 0.33
USP49-201ENST00000373006 RBM42Q9BTD8 480 aaKnown RBP17.14■□□□□ 0.33
USP49-201ENST00000373006 ZBTB7CA1YPR0 619 aa17.14■□□□□ 0.33
USP49-201ENST00000373006 RBM10P98175 930 aaKnown RBP17.14■□□□□ 0.33
USP49-201ENST00000373006 RIPK4P57078 832 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms