RNA–Protein interactions for RNA: ENST00000372056.8

LDB3-203, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,868 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-203ENST00000372056 CPS1P31327 1500 aa17.65■□□□□ 0.42
LDB3-203ENST00000372056 PRAM1Q96QH2 718 aa17.65■□□□□ 0.42
LDB3-203ENST00000372056 HNRNPUQ00839 825 aaKnown RBP eCLIP17.63■□□□□ 0.41
LDB3-203ENST00000372056 RALBP1Q15311 655 aa17.63■□□□□ 0.41
LDB3-203ENST00000372056 NPHP4O75161 1426 aaPredicted RBP17.63■□□□□ 0.41
LDB3-203ENST00000372056 CNGB1Q14028 1251 aaPredicted RBP17.63■□□□□ 0.41
LDB3-203ENST00000372056 ATAD2Q6PL18 1390 aa17.62■□□□□ 0.41
LDB3-203ENST00000372056 PTCH1Q13635 1447 aa17.62■□□□□ 0.41
LDB3-203ENST00000372056 PANK3Q9H999 370 aa17.61■□□□□ 0.41
LDB3-203ENST00000372056 PARD3Q8TEW0 1356 aa17.61■□□□□ 0.41
LDB3-203ENST00000372056 FAM9BQ8IZU0 186 aa17.61■□□□□ 0.41
LDB3-203ENST00000372056 SLC26A8Q96RN1 970 aa17.6■□□□□ 0.41
LDB3-203ENST00000372056 MYBBP1AQ9BQG0 1328 aaKnown RBP17.6■□□□□ 0.41
LDB3-203ENST00000372056 AMOTL2Q9Y2J4 779 aa17.59■□□□□ 0.41
LDB3-203ENST00000372056 MYOM1P52179 1685 aa17.58■□□□□ 0.4
LDB3-203ENST00000372056 BRD4O60885 1362 aaPredicted RBP17.57■□□□□ 0.4
LDB3-203ENST00000372056 NPC1L1Q9UHC9 1359 aa17.55■□□□□ 0.4
LDB3-203ENST00000372056 SRPK2P78362 688 aaKnown RBP17.55■□□□□ 0.4
LDB3-203ENST00000372056 KNSTRNQ9Y448 316 aa17.55■□□□□ 0.4
LDB3-203ENST00000372056 XRN1Q8IZH2 1706 aaKnown RBP17.55■□□□□ 0.4
LDB3-203ENST00000372056 CHD2O14647 1828 aaKnown RBP17.54■□□□□ 0.4
LDB3-203ENST00000372056 TMC1Q8TDI8 760 aa17.54■□□□□ 0.4
LDB3-203ENST00000372056 TULP4Q9NRJ4 1543 aa17.54■□□□□ 0.4
LDB3-203ENST00000372056 ADGRB2O60241 1585 aa17.54■□□□□ 0.4
LDB3-203ENST00000372056 WASLO00401 505 aaPredicted RBP17.54■□□□□ 0.4
LDB3-203ENST00000372056 PNISRQ8TF01 805 aaKnown RBP17.54■□□□□ 0.4
LDB3-203ENST00000372056 KCNA6P17658 529 aa17.53■□□□□ 0.4
LDB3-203ENST00000372056 CDK19Q9BWU1 502 aa17.53■□□□□ 0.4
LDB3-203ENST00000372056 TERF2IPQ9NYB0 399 aa17.53■□□□□ 0.4
LDB3-203ENST00000372056 MINK1Q8N4C8 1332 aaPredicted RBP17.53■□□□□ 0.4
LDB3-203ENST00000372056 PTPRUQ92729 1446 aa17.53■□□□□ 0.4
LDB3-203ENST00000372056 WAPLQ7Z5K2 1190 aa17.52■□□□□ 0.4
LDB3-203ENST00000372056 NLRP13Q86W25 1043 aa17.52■□□□□ 0.4
LDB3-203ENST00000372056 SENP3Q9H4L4 574 aaPredicted RBP17.52■□□□□ 0.4
LDB3-203ENST00000372056 ROBO2Q9HCK4 1378 aa17.52■□□□□ 0.4
LDB3-203ENST00000372056 ZBED9Q6R2W3 1325 aa17.52■□□□□ 0.39
LDB3-203ENST00000372056 LMTK3Q96Q04 1460 aa17.51■□□□□ 0.39
LDB3-203ENST00000372056 SAFB2Q14151 953 aaKnown RBP eCLIP17.51■□□□□ 0.39
LDB3-203ENST00000372056 CC2D1BQ5T0F9 858 aaKnown RBP17.51■□□□□ 0.39
LDB3-203ENST00000372056 DMRT2Q9Y5R5 561 aa17.51■□□□□ 0.39
LDB3-203ENST00000372056 NCKAP5LQ9HCH0 1330 aa17.5■□□□□ 0.39
LDB3-203ENST00000372056 ANKRD36BQ8N2N9 1353 aa17.5■□□□□ 0.39
LDB3-203ENST00000372056 NCOA3Q9Y6Q9 1424 aa17.49■□□□□ 0.39
LDB3-203ENST00000372056 AMER1Q5JTC6 1135 aaPredicted RBP17.48■□□□□ 0.39
LDB3-203ENST00000372056 HDGFL2Q7Z4V5 671 aaPredicted RBP17.48■□□□□ 0.39
LDB3-203ENST00000372056 NKTRP30414 1462 aaKnown RBP17.48■□□□□ 0.39
LDB3-203ENST00000372056 PLEKHH1Q9ULM0 1364 aa17.48■□□□□ 0.39
LDB3-203ENST00000372056 NWD1Q149M9 1564 aa17.48■□□□□ 0.39
LDB3-203ENST00000372056 CABP2Q9NPB3 220 aa17.48■□□□□ 0.39
LDB3-203ENST00000372056 CCDC61Q9Y6R9 512 aa17.48■□□□□ 0.39
LDB3-203ENST00000372056 MYT1Q01538 1121 aa17.47■□□□□ 0.39
LDB3-203ENST00000372056 ZNF692Q9BU19 519 aaPredicted RBP17.46■□□□□ 0.39
LDB3-203ENST00000372056 SUPT16HQ9Y5B9 1047 aaKnown RBP17.46■□□□□ 0.39
LDB3-203ENST00000372056 NSD2O96028 1365 aa17.46■□□□□ 0.39
LDB3-203ENST00000372056 ATP7BP35670 1465 aa17.46■□□□□ 0.39
LDB3-203ENST00000372056 ANKARQ7Z5J8 1434 aa17.44■□□□□ 0.38
LDB3-203ENST00000372056 SLC12A5Q9H2X9 1139 aa17.44■□□□□ 0.38
LDB3-203ENST00000372056 CGNL1Q0VF96 1302 aa17.44■□□□□ 0.38
LDB3-203ENST00000372056 USP32Q8NFA0 1604 aa17.44■□□□□ 0.38
LDB3-203ENST00000372056 NUDT16Q96DE0 195 aaKnown RBP17.43■□□□□ 0.38
LDB3-203ENST00000372056 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.43■□□□□ 0.38
LDB3-203ENST00000372056 CARD14Q9BXL6 1004 aa17.41■□□□□ 0.38
LDB3-203ENST00000372056 PLEKHG3A1L390 1219 aa17.4■□□□□ 0.38
LDB3-203ENST00000372056 ITSN1Q15811 1721 aa17.4■□□□□ 0.38
LDB3-203ENST00000372056 CDC42BPGQ6DT37 1551 aa17.4■□□□□ 0.38
LDB3-203ENST00000372056 ADGRL3Q9HAR2 1447 aa17.39■□□□□ 0.38
LDB3-203ENST00000372056 HSPA2P54652 639 aa17.39■□□□□ 0.38
LDB3-203ENST00000372056 CABP1Q9NZU7 370 aa17.39■□□□□ 0.38
LDB3-203ENST00000372056 INSRP06213 1382 aa17.39■□□□□ 0.37
LDB3-203ENST00000372056 PPIP5K1Q6PFW1 1433 aa17.39■□□□□ 0.37
LDB3-203ENST00000372056 PPP2R1AP30153 589 aa17.39■□□□□ 0.37
LDB3-203ENST00000372056 PROSER2Q86WR7 435 aaPredicted RBP17.39■□□□□ 0.37
LDB3-203ENST00000372056 NSD3Q9BZ95 1437 aa17.38■□□□□ 0.37
LDB3-203ENST00000372056 STRCQ7RTU9 1775 aa17.37■□□□□ 0.37
LDB3-203ENST00000372056 A0A1W2PP64 1363 aa17.37■□□□□ 0.37
LDB3-203ENST00000372056 CPSF1Q10570 1443 aaKnown RBP17.36■□□□□ 0.37
LDB3-203ENST00000372056 NEFLP07196 543 aa17.36■□□□□ 0.37
LDB3-203ENST00000372056 FKBP8Q14318 412 aa17.36■□□□□ 0.37
LDB3-203ENST00000372056 C19orf44Q9H6X5 657 aa17.36■□□□□ 0.37
LDB3-203ENST00000372056 DCCP43146 1447 aa17.36■□□□□ 0.37
LDB3-203ENST00000372056 EDC4Q6P2E9 1401 aaKnown RBP17.35■□□□□ 0.37
LDB3-203ENST00000372056 BLMP54132 1417 aaPredicted RBP17.34■□□□□ 0.37
LDB3-203ENST00000372056 C14orf37Q86TY3 774 aa17.34■□□□□ 0.37
LDB3-203ENST00000372056 FMN2Q9NZ56 1722 aa17.34■□□□□ 0.37
LDB3-203ENST00000372056 TOPAZ1Q8N9V7 1692 aa17.33■□□□□ 0.37
LDB3-203ENST00000372056 CD163L1Q9NR16 1453 aa17.33■□□□□ 0.37
LDB3-203ENST00000372056 SMG6Q86US8 1419 aaKnown RBP17.33■□□□□ 0.37
LDB3-203ENST00000372056 MORC1Q86VD1 984 aa17.32■□□□□ 0.36
LDB3-203ENST00000372056 POLR3AO14802 1390 aaPredicted RBP17.31■□□□□ 0.36
LDB3-203ENST00000372056 PRR36Q9H6K5 1346 aa17.31■□□□□ 0.36
LDB3-203ENST00000372056 NALCNQ8IZF0 1738 aa17.3■□□□□ 0.36
LDB3-203ENST00000372056 AKAP12Q02952 1782 aa17.3■□□□□ 0.36
LDB3-203ENST00000372056 TTC21AQ8NDW8 1320 aa17.3■□□□□ 0.36
LDB3-203ENST00000372056 CADPS2Q86UW7 1296 aa17.3■□□□□ 0.36
LDB3-203ENST00000372056 ATF3P18847 181 aa17.29■□□□□ 0.36
LDB3-203ENST00000372056 MON2Q7Z3U7 1717 aa17.28■□□□□ 0.36
LDB3-203ENST00000372056 ACEP12821 1306 aa17.28■□□□□ 0.36
LDB3-203ENST00000372056 SENP3-EIF4A1A0A087X0R7 540 aa17.28■□□□□ 0.36
LDB3-203ENST00000372056 NGDNQ8NEJ9 315 aaKnown RBP17.28■□□□□ 0.36
LDB3-203ENST00000372056 NUDCQ9Y266 331 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms