RNA–Protein interactions for RNA: ENST00000367257.8

SYNE1-209, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 5,022 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-209ENST00000367257 AMPHP49418 695 aa10.8□□□□□ -0.68
SYNE1-209ENST00000367257 APBB1O00213 710 aa10.8□□□□□ -0.68
SYNE1-209ENST00000367257 HOMEZQ8IX15 550 aa10.8□□□□□ -0.68
SYNE1-209ENST00000367257 PCF11O94913 1555 aaKnown RBP10.79□□□□□ -0.68
SYNE1-209ENST00000367257 ERC2O15083 957 aa10.79□□□□□ -0.68
SYNE1-209ENST00000367257 MAGI3Q5TCQ9 1506 aa10.79□□□□□ -0.68
SYNE1-209ENST00000367257 MARCH6O60337 910 aa10.79□□□□□ -0.68
SYNE1-209ENST00000367257 TRHP20396 242 aaPredicted RBP10.79□□□□□ -0.68
SYNE1-209ENST00000367257 CAVIN1Q6NZI2 390 aaKnown RBP10.79□□□□□ -0.68
SYNE1-209ENST00000367257 COG3Q96JB2 828 aa10.79□□□□□ -0.68
SYNE1-209ENST00000367257 HMGN5P82970 282 aaKnown RBP10.79□□□□□ -0.68
SYNE1-209ENST00000367257 ZHX1Q9UKY1 873 aaPredicted RBP10.79□□□□□ -0.68
SYNE1-209ENST00000367257 TDRD9Q8NDG6 1382 aaKnown RBP10.79□□□□□ -0.68
SYNE1-209ENST00000367257 MYO6Q9UM54 1294 aa10.78□□□□□ -0.68
SYNE1-209ENST00000367257 GNAI1P63096 354 aa10.78□□□□□ -0.68
SYNE1-209ENST00000367257 DZIP1LQ8IYY4 767 aaKnown RBP10.78□□□□□ -0.68
SYNE1-209ENST00000367257 STK26Q9P289 416 aa10.78□□□□□ -0.68
SYNE1-209ENST00000367257 KIF3BO15066 747 aa10.77□□□□□ -0.68
SYNE1-209ENST00000367257 CT47B1P0C2W7 299 aaPredicted RBP10.77□□□□□ -0.68
SYNE1-209ENST00000367257 PIP4K2AP48426 406 aaPredicted RBP10.77□□□□□ -0.68
SYNE1-209ENST00000367257 NOL10Q9BSC4 688 aaKnown RBP10.77□□□□□ -0.69
SYNE1-209ENST00000367257 TAOK2Q9UL54 1235 aa10.77□□□□□ -0.69
SYNE1-209ENST00000367257 DCTN1Q14203 1278 aa10.77□□□□□ -0.69
SYNE1-209ENST00000367257 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.77□□□□□ -0.69
SYNE1-209ENST00000367257 RUNDC1Q96C34 613 aa10.77□□□□□ -0.69
SYNE1-209ENST00000367257 C1orf141Q5JVX7 400 aa10.77□□□□□ -0.69
SYNE1-209ENST00000367257 ANKRD45Q5TZF3 282 aa10.77□□□□□ -0.69
SYNE1-209ENST00000367257 NGDNQ8NEJ9 315 aaKnown RBP10.77□□□□□ -0.69
SYNE1-209ENST00000367257 HIP1O00291 1037 aa10.76□□□□□ -0.69
SYNE1-209ENST00000367257 RDXP35241 583 aaKnown RBP10.76□□□□□ -0.69
SYNE1-209ENST00000367257 DEF6Q9H4E7 631 aa10.76□□□□□ -0.69
SYNE1-209ENST00000367257 SLC4A10Q6U841 1118 aa10.76□□□□□ -0.69
SYNE1-209ENST00000367257 SASS6Q6UVJ0 657 aa10.76□□□□□ -0.69
SYNE1-209ENST00000367257 CCDC73Q6ZRK6 1079 aa10.76□□□□□ -0.69
SYNE1-209ENST00000367257 PSMA5P28066 241 aa10.76□□□□□ -0.69
SYNE1-209ENST00000367257 TRDNQ13061 729 aa10.76□□□□□ -0.69
SYNE1-209ENST00000367257 TXLNBQ8N3L3 684 aa10.76□□□□□ -0.69
SYNE1-209ENST00000367257 PANK3Q9H999 370 aa10.76□□□□□ -0.69
SYNE1-209ENST00000367257 CHMP3Q9Y3E7 222 aa10.76□□□□□ -0.69
SYNE1-209ENST00000367257 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.76□□□□□ -0.69
SYNE1-209ENST00000367257 FHOD3Q2V2M9 1422 aa10.75□□□□□ -0.69
SYNE1-209ENST00000367257 HSP90B2PQ58FF3 399 aa10.75□□□□□ -0.69
SYNE1-209ENST00000367257 PRDM10Q9NQV6 1147 aa10.75□□□□□ -0.69
SYNE1-209ENST00000367257 SAFBQ15424 915 aaKnown RBP eCLIP10.75□□□□□ -0.69
SYNE1-209ENST00000367257 RUFY1Q96T51 708 aa10.75□□□□□ -0.69
SYNE1-209ENST00000367257 UQCRHLA0A096LP55 91 aa10.75□□□□□ -0.69
SYNE1-209ENST00000367257 ESPNB1AK53 854 aa10.75□□□□□ -0.69
SYNE1-209ENST00000367257 UQCRHP07919 91 aa10.75□□□□□ -0.69
SYNE1-209ENST00000367257 PDCP20941 246 aa10.75□□□□□ -0.69
SYNE1-209ENST00000367257 CCDC7Q96M83 1385 aa10.75□□□□□ -0.69
SYNE1-209ENST00000367257 PPRC1Q5VV67 1664 aaKnown RBP10.74□□□□□ -0.69
SYNE1-209ENST00000367257 CDC45O75419 566 aa10.74□□□□□ -0.69
SYNE1-209ENST00000367257 CGNQ9P2M7 1197 aaKnown RBP10.74□□□□□ -0.69
SYNE1-209ENST00000367257 SENP3-EIF4A1A0A087X0R7 540 aa10.74□□□□□ -0.69
SYNE1-209ENST00000367257 CPLX1O14810 134 aa10.74□□□□□ -0.69
SYNE1-209ENST00000367257 DIAPH1O60610 1272 aaKnown RBP10.74□□□□□ -0.69
SYNE1-209ENST00000367257 SMC3Q9UQE7 1217 aa10.74□□□□□ -0.69
SYNE1-209ENST00000367257 IFIT2P09913 472 aaKnown RBP10.73□□□□□ -0.69
SYNE1-209ENST00000367257 BRD2P25440 801 aaKnown RBP10.73□□□□□ -0.69
SYNE1-209ENST00000367257 CCDC173Q0VFZ6 552 aa10.73□□□□□ -0.69
SYNE1-209ENST00000367257 SAFB2Q14151 953 aaKnown RBP eCLIP10.73□□□□□ -0.69
SYNE1-209ENST00000367257 DNAJC2Q99543 621 aaKnown RBP10.73□□□□□ -0.69
SYNE1-209ENST00000367257 FYCO1Q9BQS8 1478 aa10.73□□□□□ -0.69
SYNE1-209ENST00000367257 ST20-MTHFSA0A0A6YYL1 179 aa10.73□□□□□ -0.69
SYNE1-209ENST00000367257 G3V3G9 751 aa10.73□□□□□ -0.69
SYNE1-209ENST00000367257 DCAF8Q5TAQ9 597 aa10.73□□□□□ -0.69
SYNE1-209ENST00000367257 MNS1Q8NEH6 495 aa10.73□□□□□ -0.69
SYNE1-209ENST00000367257 CRBNQ96SW2 442 aa10.73□□□□□ -0.69
SYNE1-209ENST00000367257 XBP1P17861 261 aa10.73□□□□□ -0.69
SYNE1-209ENST00000367257 TEFQ10587 303 aa10.72□□□□□ -0.69
SYNE1-209ENST00000367257 CLUAP1Q96AJ1 413 aa10.72□□□□□ -0.69
SYNE1-209ENST00000367257 BRMS1Q9HCU9 246 aa10.72□□□□□ -0.69
SYNE1-209ENST00000367257 ERICH2A1L162 156 aa10.72□□□□□ -0.69
SYNE1-209ENST00000367257 RILPL2Q969X0 211 aa10.72□□□□□ -0.69
SYNE1-209ENST00000367257 CWC22Q9HCG8 908 aaKnown RBP10.72□□□□□ -0.69
SYNE1-209ENST00000367257 PLCD3Q8N3E9 789 aa10.72□□□□□ -0.69
SYNE1-209ENST00000367257 RRBP1Q9P2E9 1410 aaKnown RBP10.72□□□□□ -0.69
SYNE1-209ENST00000367257 TOMM22Q9NS69 142 aa10.72□□□□□ -0.69
SYNE1-209ENST00000367257 RAPGEF6Q8TEU7 1601 aa10.71□□□□□ -0.69
SYNE1-209ENST00000367257 CALCOCO1Q9P1Z2 691 aa10.71□□□□□ -0.69
SYNE1-209ENST00000367257 OLFM4Q6UX06 510 aa10.71□□□□□ -0.69
SYNE1-209ENST00000367257 HOMER1Q86YM7 354 aa10.71□□□□□ -0.69
SYNE1-209ENST00000367257 BICD2Q8TD16 824 aa10.71□□□□□ -0.69
SYNE1-209ENST00000367257 CCDC146Q8IYE0 955 aa10.71□□□□□ -0.7
SYNE1-209ENST00000367257 SOX12O15370 315 aa10.7□□□□□ -0.7
SYNE1-209ENST00000367257 NASPP49321 788 aaPredicted RBP10.7□□□□□ -0.7
SYNE1-209ENST00000367257 G3BP1Q13283 466 aaKnown RBP eCLIP10.7□□□□□ -0.7
SYNE1-209ENST00000367257 RABEP1Q15276 862 aa10.7□□□□□ -0.7
SYNE1-209ENST00000367257 RRP12Q5JTH9 1297 aaKnown RBP10.7□□□□□ -0.7
SYNE1-209ENST00000367257 EXOC6Q8TAG9 804 aa10.7□□□□□ -0.7
SYNE1-209ENST00000367257 ANO2Q9NQ90 1003 aa10.7□□□□□ -0.7
SYNE1-209ENST00000367257 TTC5Q8N0Z6 440 aa10.7□□□□□ -0.7
SYNE1-209ENST00000367257 HFM1A2PYH4 1435 aa10.7□□□□□ -0.7
SYNE1-209ENST00000367257 UHRF1BP1LA0JNW5 1464 aa10.7□□□□□ -0.7
SYNE1-209ENST00000367257 PDE3AQ14432 1141 aa10.7□□□□□ -0.7
SYNE1-209ENST00000367257 C22orf23Q9BZE7 217 aa10.7□□□□□ -0.7
SYNE1-209ENST00000367257 FGD6Q6ZV73 1430 aa10.7□□□□□ -0.7
SYNE1-209ENST00000367257 FRAT2O75474 233 aaPredicted RBP10.7□□□□□ -0.7
SYNE1-209ENST00000367257 USP8P40818 1118 aa10.7□□□□□ -0.7
SYNE1-209ENST00000367257 CIZ1Q9ULV3 898 aaPredicted RBP10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms