RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 ERICH2A1L162 156 aa5.04□□□□□ -1.6
USH2A-202ENST00000366942 CABP4P57796 275 aa5.04□□□□□ -1.6
USH2A-202ENST00000366942 CCDC117Q8IWD4 279 aaPredicted RBP5.04□□□□□ -1.6
USH2A-202ENST00000366942 NR2E3Q9Y5X4 410 aa5.04□□□□□ -1.6
USH2A-202ENST00000366942 CSPP1Q1MSJ5 1256 aa5.04□□□□□ -1.6
USH2A-202ENST00000366942 PPP4R3BQ5MIZ7 849 aa5.04□□□□□ -1.6
USH2A-202ENST00000366942 NBPF3Q9H094 633 aa5.04□□□□□ -1.6
USH2A-202ENST00000366942 KIF15Q9NS87 1388 aa5.04□□□□□ -1.6
USH2A-202ENST00000366942 FYCO1Q9BQS8 1478 aa5.04□□□□□ -1.6
USH2A-202ENST00000366942 UQCRHP07919 91 aa5.04□□□□□ -1.6
USH2A-202ENST00000366942 FERMT2Q96AC1 680 aa5.04□□□□□ -1.6
USH2A-202ENST00000366942 IVNS1ABPQ9Y6Y0 642 aa5.04□□□□□ -1.6
USH2A-202ENST00000366942 BAZ1AQ9NRL2 1556 aaPredicted RBP5.04□□□□□ -1.6
USH2A-202ENST00000366942 CERKQ8TCT0 537 aa5.04□□□□□ -1.6
USH2A-202ENST00000366942 LBHD1Q9BQE6 289 aaPredicted RBP5.04□□□□□ -1.6
USH2A-202ENST00000366942 UHRF1BP1Q6BDS2 1440 aa5.03□□□□□ -1.6
USH2A-202ENST00000366942 MIA2Q96PC5 1412 aa5.03□□□□□ -1.6
USH2A-202ENST00000366942 UQCRHLA0A096LP55 91 aa5.03□□□□□ -1.6
USH2A-202ENST00000366942 FAM83GA6ND36 823 aa5.03□□□□□ -1.6
USH2A-202ENST00000366942 HSP90AB3PQ58FF7 597 aa5.03□□□□□ -1.6
USH2A-202ENST00000366942 SLC17A8Q8NDX2 589 aa5.03□□□□□ -1.6
USH2A-202ENST00000366942 TBC1D2BQ9UPU7 963 aa5.03□□□□□ -1.6
USH2A-202ENST00000366942 GIGYF1O75420 1035 aaPredicted RBP5.03□□□□□ -1.6
USH2A-202ENST00000366942 APBA3O96018 575 aa5.03□□□□□ -1.6
USH2A-202ENST00000366942 TNNT3P45378 269 aaPredicted RBP5.03□□□□□ -1.6
USH2A-202ENST00000366942 TRDNQ13061 729 aa5.03□□□□□ -1.6
USH2A-202ENST00000366942 PABPC4Q13310 644 aaKnown RBP eCLIP5.03□□□□□ -1.6
USH2A-202ENST00000366942 NOLC1Q14978 699 aaKnown RBP eCLIP5.03□□□□□ -1.6
USH2A-202ENST00000366942 PALM3A6NDB9 673 aaPredicted RBP5.02□□□□□ -1.61
USH2A-202ENST00000366942 CAPN15O75808 1086 aa5.02□□□□□ -1.61
USH2A-202ENST00000366942 YY1P25490 414 aa5.02□□□□□ -1.61
USH2A-202ENST00000366942 SLC4A3P48751 1232 aa5.02□□□□□ -1.61
USH2A-202ENST00000366942 PNISRQ8TF01 805 aaKnown RBP5.02□□□□□ -1.61
USH2A-202ENST00000366942 ZNF692Q9BU19 519 aaPredicted RBP5.02□□□□□ -1.61
USH2A-202ENST00000366942 ANKRD30BQ9BXX2 1392 aa5.02□□□□□ -1.61
USH2A-202ENST00000366942 H7C1D1 291 aa5.02□□□□□ -1.61
USH2A-202ENST00000366942 EXOC4Q96A65 974 aa5.02□□□□□ -1.61
USH2A-202ENST00000366942 TMOD3Q9NYL9 352 aa5.02□□□□□ -1.61
USH2A-202ENST00000366942 IFT140Q96RY7 1462 aa5.02□□□□□ -1.61
USH2A-202ENST00000366942 MRC2Q9UBG0 1479 aa5.02□□□□□ -1.61
USH2A-202ENST00000366942 DDB1Q16531 1140 aa5.02□□□□□ -1.61
USH2A-202ENST00000366942 MPHOSPH8Q99549 860 aa5.02□□□□□ -1.61
USH2A-202ENST00000366942 FEZ1Q99689 392 aa5.02□□□□□ -1.61
USH2A-202ENST00000366942 EHMT1Q9H9B1 1298 aa5.02□□□□□ -1.61
USH2A-202ENST00000366942 GPHNQ9NQX3 736 aaPredicted RBP5.02□□□□□ -1.61
USH2A-202ENST00000366942 USP21Q9UK80 565 aa5.02□□□□□ -1.61
USH2A-202ENST00000366942 PDZRN3Q9UPQ7 1066 aa5.02□□□□□ -1.61
USH2A-202ENST00000366942 RAPGEF3O95398 923 aa5.02□□□□□ -1.61
USH2A-202ENST00000366942 TPM2P07951 284 aa5.02□□□□□ -1.61
USH2A-202ENST00000366942 TAF12Q16514 161 aa5.02□□□□□ -1.61
USH2A-202ENST00000366942 SLC4A8Q2Y0W8 1093 aa5.02□□□□□ -1.61
USH2A-202ENST00000366942 ARHGAP27Q6ZUM4 889 aa5.02□□□□□ -1.61
USH2A-202ENST00000366942 CRACR2BQ8N4Y2 399 aaPredicted RBP5.02□□□□□ -1.61
USH2A-202ENST00000366942 CCDC97Q96F63 343 aaPredicted RBP5.02□□□□□ -1.61
USH2A-202ENST00000366942 DNAJC2Q99543 621 aaKnown RBP5.02□□□□□ -1.61
USH2A-202ENST00000366942 ZNF408Q9H9D4 720 aa5.02□□□□□ -1.61
USH2A-202ENST00000366942 CABP5Q9NP86 173 aa5.02□□□□□ -1.61
USH2A-202ENST00000366942 TPM4P67936 248 aa5.01□□□□□ -1.61
USH2A-202ENST00000366942 ODF2Q5BJF6 829 aa5.01□□□□□ -1.61
USH2A-202ENST00000366942 NOM1Q5C9Z4 860 aaKnown RBP5.01□□□□□ -1.61
USH2A-202ENST00000366942 DCAF11Q8TEB1 546 aa5.01□□□□□ -1.61
USH2A-202ENST00000366942 STK24Q9Y6E0 443 aa5.01□□□□□ -1.61
USH2A-202ENST00000366942 IGHMBP2P38935 993 aaKnown RBP5.01□□□□□ -1.61
USH2A-202ENST00000366942 EAPPQ56P03 285 aaPredicted RBP5.01□□□□□ -1.61
USH2A-202ENST00000366942 RSPH6AQ9H0K4 717 aa5.01□□□□□ -1.61
USH2A-202ENST00000366942 RNF216Q9NWF9 866 aaPredicted RBP5.01□□□□□ -1.61
USH2A-202ENST00000366942 ZCCHC6Q5VYS8 1495 aaKnown RBP5.01□□□□□ -1.61
USH2A-202ENST00000366942 PLCD3Q8N3E9 789 aa5.01□□□□□ -1.61
USH2A-202ENST00000366942 C9orf78Q9NZ63 289 aaPredicted RBP5.01□□□□□ -1.61
USH2A-202ENST00000366942 LDHCP07864 332 aa5.01□□□□□ -1.61
USH2A-202ENST00000366942 CCDC27Q2M243 656 aa5.01□□□□□ -1.61
USH2A-202ENST00000366942 CCDC82Q8N4S0 544 aa5.01□□□□□ -1.61
USH2A-202ENST00000366942 NEBLO76041 1014 aa5.01□□□□□ -1.61
USH2A-202ENST00000366942 PTMAP06454 111 aaKnown RBP5.01□□□□□ -1.61
USH2A-202ENST00000366942 PDE3AQ14432 1141 aa5.01□□□□□ -1.61
USH2A-202ENST00000366942 ROCK2O75116 1388 aaKnown RBP5□□□□□ -1.61
USH2A-202ENST00000366942 NUP155O75694 1391 aa5□□□□□ -1.61
USH2A-202ENST00000366942 HMGB1P09429 215 aaKnown RBP5□□□□□ -1.61
USH2A-202ENST00000366942 KCNA4P22459 653 aa5□□□□□ -1.61
USH2A-202ENST00000366942 APBB1IPQ7Z5R6 666 aaPredicted RBP5□□□□□ -1.61
USH2A-202ENST00000366942 IQCA1LA6NCM1 817 aa5□□□□□ -1.61
USH2A-202ENST00000366942 U2AF1L5P0DN76 240 aaPredicted RBP5□□□□□ -1.61
USH2A-202ENST00000366942 U2AF1Q01081 240 aaKnown RBP eCLIP5□□□□□ -1.61
USH2A-202ENST00000366942 NCBP1Q09161 790 aaKnown RBP5□□□□□ -1.61
USH2A-202ENST00000366942 NBR1Q14596 966 aa5□□□□□ -1.61
USH2A-202ENST00000366942 FAM196AQ6ZSG2 479 aa5□□□□□ -1.61
USH2A-202ENST00000366942 QTRT2Q9H974 415 aaKnown RBP5□□□□□ -1.61
USH2A-202ENST00000366942 FANCD2Q9BXW9 1451 aa5□□□□□ -1.61
USH2A-202ENST00000366942 FCHSD2O94868 740 aa5□□□□□ -1.61
USH2A-202ENST00000366942 ZMYND15Q9H091 742 aa5□□□□□ -1.61
USH2A-202ENST00000366942 C6orf229H3BNL8 230 aa5□□□□□ -1.61
USH2A-202ENST00000366942 STK25O00506 426 aa5□□□□□ -1.61
USH2A-202ENST00000366942 VEZTQ9HBM0 779 aa5□□□□□ -1.61
USH2A-202ENST00000366942 PLB1Q6P1J6 1458 aa4.99□□□□□ -1.61
USH2A-202ENST00000366942 PLEKHH2Q8IVE3 1493 aa4.99□□□□□ -1.61
USH2A-202ENST00000366942 NBPF20Q3BBV1 942 aa4.99□□□□□ -1.61
USH2A-202ENST00000366942 HSP90AB4PQ58FF6 505 aa4.99□□□□□ -1.61
USH2A-202ENST00000366942 SUGP2Q8IX01 1082 aaKnown RBP eCLIP4.99□□□□□ -1.61
USH2A-202ENST00000366942 ACEP12821 1306 aa4.99□□□□□ -1.61
USH2A-202ENST00000366942 RBM6P78332 1123 aaKnown RBP4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms