RNA–Protein interactions for RNA: ENST00000358207.9

SMARCAL1-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SMARCAL1, Length 3,056 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1-202ENST00000358207 COL16A1Q07092 1604 aaPredicted RBP12.48□□□□□ -0.41
SMARCAL1-202ENST00000358207 NAIPQ13075 1403 aa12.47□□□□□ -0.41
SMARCAL1-202ENST00000358207 RRP9O43818 475 aaKnown RBP12.46□□□□□ -0.41
SMARCAL1-202ENST00000358207 NEXMIFQ5QGS0 1516 aa12.46□□□□□ -0.41
SMARCAL1-202ENST00000358207 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.46□□□□□ -0.42
SMARCAL1-202ENST00000358207 CLTCL1P53675 1640 aa12.46□□□□□ -0.42
SMARCAL1-202ENST00000358207 RRAGDQ9NQL2 400 aaPredicted RBP12.45□□□□□ -0.42
SMARCAL1-202ENST00000358207 PHLPP1O60346 1717 aa12.45□□□□□ -0.42
SMARCAL1-202ENST00000358207 HNRNPUQ00839 825 aaKnown RBP eCLIP12.44□□□□□ -0.42
SMARCAL1-202ENST00000358207 SLC4A1APQ9BWU0 796 aaKnown RBP12.43□□□□□ -0.42
SMARCAL1-202ENST00000358207 ADAMTS13Q76LX8 1427 aa12.43□□□□□ -0.42
SMARCAL1-202ENST00000358207 TOM1O60784 492 aa12.42□□□□□ -0.42
SMARCAL1-202ENST00000358207 COL22A1Q8NFW1 1626 aaPredicted RBP12.41□□□□□ -0.42
SMARCAL1-202ENST00000358207 PRDM4Q9UKN5 801 aa12.41□□□□□ -0.42
SMARCAL1-202ENST00000358207 HFM1A2PYH4 1435 aa12.41□□□□□ -0.42
SMARCAL1-202ENST00000358207 PPM1GO15355 546 aaPredicted RBP12.41□□□□□ -0.42
SMARCAL1-202ENST00000358207 MPHOSPH9Q99550 1183 aa12.41□□□□□ -0.42
SMARCAL1-202ENST00000358207 RIMS2Q9UQ26 1411 aa12.41□□□□□ -0.42
SMARCAL1-202ENST00000358207 SOCS7O14512 581 aa12.41□□□□□ -0.42
SMARCAL1-202ENST00000358207 ANP32CO43423 234 aa12.4□□□□□ -0.42
SMARCAL1-202ENST00000358207 ZNF326Q5BKZ1 582 aaKnown RBP12.4□□□□□ -0.42
SMARCAL1-202ENST00000358207 NALCNQ8IZF0 1738 aa12.4□□□□□ -0.42
SMARCAL1-202ENST00000358207 KCNA6P17658 529 aa12.4□□□□□ -0.42
SMARCAL1-202ENST00000358207 NPM2Q86SE8 214 aaKnown RBP12.4□□□□□ -0.42
SMARCAL1-202ENST00000358207 LTKP29376 864 aa12.38□□□□□ -0.43
SMARCAL1-202ENST00000358207 PLPPR3Q6T4P5 718 aa12.38□□□□□ -0.43
SMARCAL1-202ENST00000358207 HSP90AA1P07900 732 aaKnown RBP12.37□□□□□ -0.43
SMARCAL1-202ENST00000358207 NFKBIBQ15653 356 aa12.37□□□□□ -0.43
SMARCAL1-202ENST00000358207 UBAP1LF5GYI3 381 aa12.36□□□□□ -0.43
SMARCAL1-202ENST00000358207 PTCH1Q13635 1447 aa12.36□□□□□ -0.43
SMARCAL1-202ENST00000358207 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.36□□□□□ -0.43
SMARCAL1-202ENST00000358207 EID1Q9Y6B2 187 aa12.36□□□□□ -0.43
SMARCAL1-202ENST00000358207 MARF1Q9Y4F3 1742 aaKnown RBP12.36□□□□□ -0.43
SMARCAL1-202ENST00000358207 TBX22Q9Y458 520 aa12.36□□□□□ -0.43
SMARCAL1-202ENST00000358207 RGS3P49796 1198 aa12.35□□□□□ -0.43
SMARCAL1-202ENST00000358207 NAP1L5Q96NT1 182 aaPredicted RBP12.35□□□□□ -0.43
SMARCAL1-202ENST00000358207 DISP3Q9P2K9 1392 aa12.35□□□□□ -0.43
SMARCAL1-202ENST00000358207 TONSLQ96HA7 1378 aa12.34□□□□□ -0.43
SMARCAL1-202ENST00000358207 IDI1Q13907 227 aa12.34□□□□□ -0.43
SMARCAL1-202ENST00000358207 CDC42BPGQ6DT37 1551 aa12.34□□□□□ -0.43
SMARCAL1-202ENST00000358207 SENP3Q9H4L4 574 aaPredicted RBP12.34□□□□□ -0.43
SMARCAL1-202ENST00000358207 NUP155O75694 1391 aa12.33□□□□□ -0.44
SMARCAL1-202ENST00000358207 CDK12Q9NYV4 1490 aaPredicted RBP12.33□□□□□ -0.44
SMARCAL1-202ENST00000358207 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.33□□□□□ -0.44
SMARCAL1-202ENST00000358207 HDGFP51858 240 aaKnown RBP12.33□□□□□ -0.44
SMARCAL1-202ENST00000358207 TXNDC2Q86VQ3 553 aa12.32□□□□□ -0.44
SMARCAL1-202ENST00000358207 CNGB1Q14028 1251 aaPredicted RBP12.31□□□□□ -0.44
SMARCAL1-202ENST00000358207 KDM2AQ9Y2K7 1162 aa12.31□□□□□ -0.44
SMARCAL1-202ENST00000358207 KIF1AQ12756 1690 aa12.31□□□□□ -0.44
SMARCAL1-202ENST00000358207 TMEM94Q12767 1356 aa12.3□□□□□ -0.44
SMARCAL1-202ENST00000358207 RGL3Q3MIN7 710 aa12.3□□□□□ -0.44
SMARCAL1-202ENST00000358207 TECPR2O15040 1411 aa12.3□□□□□ -0.44
SMARCAL1-202ENST00000358207 NRXN1Q9ULB1 1477 aa12.3□□□□□ -0.44
SMARCAL1-202ENST00000358207 ASXL1Q8IXJ9 1541 aa12.3□□□□□ -0.44
SMARCAL1-202ENST00000358207 HSPA1LP34931 641 aa12.29□□□□□ -0.44
SMARCAL1-202ENST00000358207 PTPRUQ92729 1446 aa12.29□□□□□ -0.44
SMARCAL1-202ENST00000358207 ILDR2Q71H61 639 aa12.29□□□□□ -0.44
SMARCAL1-202ENST00000358207 L3MBTL2Q969R5 705 aa12.29□□□□□ -0.44
SMARCAL1-202ENST00000358207 ADGRB2O60241 1585 aa12.29□□□□□ -0.44
SMARCAL1-202ENST00000358207 FMN2Q9NZ56 1722 aa12.28□□□□□ -0.44
SMARCAL1-202ENST00000358207 CALD1Q05682 793 aaKnown RBP12.28□□□□□ -0.44
SMARCAL1-202ENST00000358207 KLHL34Q8N239 644 aa12.28□□□□□ -0.44
SMARCAL1-202ENST00000358207 ADGRL3Q9HAR2 1447 aa12.27□□□□□ -0.44
SMARCAL1-202ENST00000358207 MSH6P52701 1360 aa12.27□□□□□ -0.45
SMARCAL1-202ENST00000358207 MYOM2P54296 1465 aa12.26□□□□□ -0.45
SMARCAL1-202ENST00000358207 RPGRIP1LQ68CZ1 1315 aa12.26□□□□□ -0.45
SMARCAL1-202ENST00000358207 TAF7LQ5H9L4 462 aa12.26□□□□□ -0.45
SMARCAL1-202ENST00000358207 POLR3GLQ9BT43 218 aa12.25□□□□□ -0.45
SMARCAL1-202ENST00000358207 MST1RQ04912 1400 aa12.25□□□□□ -0.45
SMARCAL1-202ENST00000358207 PNNQ9H307 717 aaKnown RBP12.25□□□□□ -0.45
SMARCAL1-202ENST00000358207 DLC1Q96QB1 1528 aa12.24□□□□□ -0.45
SMARCAL1-202ENST00000358207 KIAA1210Q9ULL0 1709 aa12.24□□□□□ -0.45
SMARCAL1-202ENST00000358207 JCADQ9P266 1359 aa12.23□□□□□ -0.45
SMARCAL1-202ENST00000358207 GTF2E1P29083 439 aaPredicted RBP12.23□□□□□ -0.45
SMARCAL1-202ENST00000358207 BBXQ8WY36 941 aaPredicted RBP12.23□□□□□ -0.45
SMARCAL1-202ENST00000358207 NAP1L2Q9ULW6 460 aaPredicted RBP12.23□□□□□ -0.45
SMARCAL1-202ENST00000358207 ABCA3Q99758 1704 aa12.23□□□□□ -0.45
SMARCAL1-202ENST00000358207 SPATA31E1Q6ZUB1 1445 aa12.23□□□□□ -0.45
SMARCAL1-202ENST00000358207 PDE4AP27815 886 aa12.23□□□□□ -0.45
SMARCAL1-202ENST00000358207 SPATA31A6Q5VVP1 1343 aa12.22□□□□□ -0.45
SMARCAL1-202ENST00000358207 CENPJQ9HC77 1338 aaPredicted RBP12.22□□□□□ -0.45
SMARCAL1-202ENST00000358207 FRAT2O75474 233 aaPredicted RBP12.22□□□□□ -0.45
SMARCAL1-202ENST00000358207 SLC4A3P48751 1232 aa12.22□□□□□ -0.45
SMARCAL1-202ENST00000358207 CHMP4BQ9H444 224 aaKnown RBP12.22□□□□□ -0.45
SMARCAL1-202ENST00000358207 CLCN1P35523 988 aa12.21□□□□□ -0.46
SMARCAL1-202ENST00000358207 CRYBG1Q9Y4K1 1723 aa12.2□□□□□ -0.46
SMARCAL1-202ENST00000358207 LRP6O75581 1613 aa12.2□□□□□ -0.46
SMARCAL1-202ENST00000358207 NBPF8Q3BBV2 869 aa12.2□□□□□ -0.46
SMARCAL1-202ENST00000358207 CCDC184Q52MB2 194 aa12.2□□□□□ -0.46
SMARCAL1-202ENST00000358207 BACH2Q9BYV9 841 aa12.2□□□□□ -0.46
SMARCAL1-202ENST00000358207 PAXIP1Q6ZW49 1069 aaPredicted RBP12.2□□□□□ -0.46
SMARCAL1-202ENST00000358207 PDCL3Q9H2J4 239 aa12.19□□□□□ -0.46
SMARCAL1-202ENST00000358207 NWD2Q9ULI1 1742 aa12.19□□□□□ -0.46
SMARCAL1-202ENST00000358207 ANKRD30BQ9BXX2 1392 aa12.18□□□□□ -0.46
SMARCAL1-202ENST00000358207 STAC3Q96MF2 364 aa12.17□□□□□ -0.46
SMARCAL1-202ENST00000358207 PIK3C2GO75747 1445 aa12.16□□□□□ -0.46
SMARCAL1-202ENST00000358207 CHGAP10645 457 aaKnown RBP12.16□□□□□ -0.46
SMARCAL1-202ENST00000358207 TRPM3Q9HCF6 1732 aaPredicted RBP12.15□□□□□ -0.46
SMARCAL1-202ENST00000358207 CADPS2Q86UW7 1296 aa12.15□□□□□ -0.46
SMARCAL1-202ENST00000358207 SIRT1Q96EB6 747 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms