RNA–Protein interactions for RNA: ENST00000356435.9

PTPRD-202, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PTPRD, Length 9,472 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-202ENST00000356435 HMGB2P26583 209 aaKnown RBP6.72□□□□□ -1.33
PTPRD-202ENST00000356435 FGD5Q6ZNL6 1462 aa6.72□□□□□ -1.33
PTPRD-202ENST00000356435 EPS15P42566 896 aa6.71□□□□□ -1.33
PTPRD-202ENST00000356435 ARID3AQ99856 593 aa6.71□□□□□ -1.33
PTPRD-202ENST00000356435 RRP7AQ9Y3A4 280 aaKnown RBP6.71□□□□□ -1.33
PTPRD-202ENST00000356435 API5Q9BZZ5 524 aaKnown RBP6.71□□□□□ -1.33
PTPRD-202ENST00000356435 SKOR2Q2VWA4 1001 aaPredicted RBP6.71□□□□□ -1.33
PTPRD-202ENST00000356435 SLC3A2P08195 630 aaKnown RBP6.71□□□□□ -1.34
PTPRD-202ENST00000356435 BRD4O60885 1362 aaPredicted RBP6.71□□□□□ -1.34
PTPRD-202ENST00000356435 DIAPH1O60610 1272 aaKnown RBP6.71□□□□□ -1.34
PTPRD-202ENST00000356435 NLRP2Q9NX02 1062 aa6.71□□□□□ -1.34
PTPRD-202ENST00000356435 CFTRP13569 1480 aa6.71□□□□□ -1.34
PTPRD-202ENST00000356435 XBP1P17861 261 aa6.71□□□□□ -1.34
PTPRD-202ENST00000356435 NINLQ9Y2I6 1382 aa6.71□□□□□ -1.34
PTPRD-202ENST00000356435 IKQ13123 557 aaPredicted RBP6.71□□□□□ -1.34
PTPRD-202ENST00000356435 ANKRD45Q5TZF3 282 aa6.7□□□□□ -1.34
PTPRD-202ENST00000356435 KIF6Q6ZMV9 814 aa6.7□□□□□ -1.34
PTPRD-202ENST00000356435 PAF1Q8N7H5 531 aa6.7□□□□□ -1.34
PTPRD-202ENST00000356435 BACH2Q9BYV9 841 aa6.7□□□□□ -1.34
PTPRD-202ENST00000356435 CCDC27Q2M243 656 aa6.7□□□□□ -1.34
PTPRD-202ENST00000356435 RALYLQ86SE5 291 aaKnown RBP6.7□□□□□ -1.34
PTPRD-202ENST00000356435 CADPSQ9ULU8 1353 aa6.7□□□□□ -1.34
PTPRD-202ENST00000356435 PATL2C9JE40 543 aaKnown RBP6.7□□□□□ -1.34
PTPRD-202ENST00000356435 RRP12Q5JTH9 1297 aaKnown RBP6.7□□□□□ -1.34
PTPRD-202ENST00000356435 NAIPQ13075 1403 aa6.7□□□□□ -1.34
PTPRD-202ENST00000356435 CYB5RLQ6IPT4 315 aa6.7□□□□□ -1.34
PTPRD-202ENST00000356435 RRP1P56182 461 aaKnown RBP6.7□□□□□ -1.34
PTPRD-202ENST00000356435 SART3Q15020 963 aaKnown RBP6.7□□□□□ -1.34
PTPRD-202ENST00000356435 DDX19BQ9UMR2 479 aa6.7□□□□□ -1.34
PTPRD-202ENST00000356435 FYB1O15117 783 aa6.69□□□□□ -1.34
PTPRD-202ENST00000356435 NAP1L1P55209 391 aaKnown RBP6.69□□□□□ -1.34
PTPRD-202ENST00000356435 FKBP5Q13451 457 aaPredicted RBP6.69□□□□□ -1.34
PTPRD-202ENST00000356435 AAMPQ13685 434 aa6.69□□□□□ -1.34
PTPRD-202ENST00000356435 AK7Q96M32 723 aa6.69□□□□□ -1.34
PTPRD-202ENST00000356435 TBC1D2BQ9UPU7 963 aa6.69□□□□□ -1.34
PTPRD-202ENST00000356435 GNL3LQ9NVN8 582 aaKnown RBP6.69□□□□□ -1.34
PTPRD-202ENST00000356435 HSP90AB2PQ58FF8 381 aa6.69□□□□□ -1.34
PTPRD-202ENST00000356435 CENPQQ7L2Z9 268 aaPredicted RBP6.69□□□□□ -1.34
PTPRD-202ENST00000356435 BICD2Q8TD16 824 aa6.69□□□□□ -1.34
PTPRD-202ENST00000356435 RUFY1Q96T51 708 aa6.69□□□□□ -1.34
PTPRD-202ENST00000356435 MYO6Q9UM54 1294 aa6.69□□□□□ -1.34
PTPRD-202ENST00000356435 L3MBTL2Q969R5 705 aa6.69□□□□□ -1.34
PTPRD-202ENST00000356435 FAM69CQ0P6D2 419 aa6.68□□□□□ -1.34
PTPRD-202ENST00000356435 CCDC173Q0VFZ6 552 aa6.68□□□□□ -1.34
PTPRD-202ENST00000356435 PANK3Q9H999 370 aa6.68□□□□□ -1.34
PTPRD-202ENST00000356435 RIC3Q7Z5B4 369 aa6.68□□□□□ -1.34
PTPRD-202ENST00000356435 JPH4Q96JJ6 628 aa6.68□□□□□ -1.34
PTPRD-202ENST00000356435 PKNOX2Q96KN3 472 aa6.68□□□□□ -1.34
PTPRD-202ENST00000356435 PPP1R1BQ9UD71 204 aaPredicted RBP6.68□□□□□ -1.34
PTPRD-202ENST00000356435 KIF7Q2M1P5 1343 aa6.68□□□□□ -1.34
PTPRD-202ENST00000356435 CCDC73Q6ZRK6 1079 aa6.68□□□□□ -1.34
PTPRD-202ENST00000356435 ELL2O00472 640 aaPredicted RBP6.68□□□□□ -1.34
PTPRD-202ENST00000356435 WASHC4Q2M389 1173 aa6.68□□□□□ -1.34
PTPRD-202ENST00000356435 THOC2Q8NI27 1593 aaKnown RBP6.68□□□□□ -1.34
PTPRD-202ENST00000356435 GNAI1P63096 354 aa6.68□□□□□ -1.34
PTPRD-202ENST00000356435 TSPYL4Q9UJ04 414 aa6.68□□□□□ -1.34
PTPRD-202ENST00000356435 CDK5RAP3Q96JB5 506 aa6.67□□□□□ -1.34
PTPRD-202ENST00000356435 NEUROD6Q96NK8 337 aa6.67□□□□□ -1.34
PTPRD-202ENST00000356435 ACBD3Q9H3P7 528 aa6.67□□□□□ -1.34
PTPRD-202ENST00000356435 ZFYVE27Q5T4F4 411 aa6.67□□□□□ -1.34
PTPRD-202ENST00000356435 ZMYM4Q5VZL5 1548 aa6.67□□□□□ -1.34
PTPRD-202ENST00000356435 OFD1O75665 1012 aa6.67□□□□□ -1.34
PTPRD-202ENST00000356435 NECTIN2Q92692 538 aa6.67□□□□□ -1.34
PTPRD-202ENST00000356435 OLFM4Q6UX06 510 aa6.66□□□□□ -1.34
PTPRD-202ENST00000356435 NAT10Q9H0A0 1025 aaKnown RBP6.66□□□□□ -1.34
PTPRD-202ENST00000356435 USP47Q96K76 1375 aa6.66□□□□□ -1.34
PTPRD-202ENST00000356435 EHBP1L1Q8N3D4 1523 aa6.66□□□□□ -1.34
PTPRD-202ENST00000356435 PLEKHH2Q8IVE3 1493 aa6.66□□□□□ -1.34
PTPRD-202ENST00000356435 FAM161AQ3B820 660 aa6.66□□□□□ -1.34
PTPRD-202ENST00000356435 DDX49Q9Y6V7 483 aaKnown RBP6.66□□□□□ -1.34
PTPRD-202ENST00000356435 RIPK4P57078 832 aa6.66□□□□□ -1.34
PTPRD-202ENST00000356435 PSMA5P28066 241 aa6.66□□□□□ -1.34
PTPRD-202ENST00000356435 INTS3Q68E01 1043 aaKnown RBP6.66□□□□□ -1.34
PTPRD-202ENST00000356435 HOMER1Q86YM7 354 aa6.66□□□□□ -1.34
PTPRD-202ENST00000356435 KRT18P05783 430 aaKnown RBP6.65□□□□□ -1.34
PTPRD-202ENST00000356435 SYCP1Q15431 976 aa6.65□□□□□ -1.34
PTPRD-202ENST00000356435 TEX35Q5T0J7 233 aa6.65□□□□□ -1.34
PTPRD-202ENST00000356435 FANCD2Q9BXW9 1451 aa6.65□□□□□ -1.34
PTPRD-202ENST00000356435 VPS37CA5D8V6 355 aaPredicted RBP6.65□□□□□ -1.34
PTPRD-202ENST00000356435 NFKBIBQ15653 356 aa6.65□□□□□ -1.34
PTPRD-202ENST00000356435 SMC3Q9UQE7 1217 aa6.65□□□□□ -1.34
PTPRD-202ENST00000356435 PIP4K2AP48426 406 aaPredicted RBP6.65□□□□□ -1.35
PTPRD-202ENST00000356435 DZIP1LQ8IYY4 767 aaKnown RBP6.65□□□□□ -1.35
PTPRD-202ENST00000356435 ZNF592Q92610 1267 aa6.65□□□□□ -1.35
PTPRD-202ENST00000356435 PODXL2Q9NZ53 605 aa6.65□□□□□ -1.35
PTPRD-202ENST00000356435 UBTFL1P0CB47 393 aaPredicted RBP6.65□□□□□ -1.35
PTPRD-202ENST00000356435 TXLNAP40222 546 aa6.65□□□□□ -1.35
PTPRD-202ENST00000356435 PNISRQ8TF01 805 aaKnown RBP6.65□□□□□ -1.35
PTPRD-202ENST00000356435 DCTN1Q14203 1278 aa6.65□□□□□ -1.35
PTPRD-202ENST00000356435 SASS6Q6UVJ0 657 aa6.64□□□□□ -1.35
PTPRD-202ENST00000356435 RBM42Q9BTD8 480 aaKnown RBP6.64□□□□□ -1.35
PTPRD-202ENST00000356435 BCL2L13Q9BXK5 485 aa6.64□□□□□ -1.35
PTPRD-202ENST00000356435 PTPN23Q9H3S7 1636 aa6.64□□□□□ -1.35
PTPRD-202ENST00000356435 CAGE1Q8TC20 777 aa6.64□□□□□ -1.35
PTPRD-202ENST00000356435 TRIM21P19474 475 aaKnown RBP6.64□□□□□ -1.35
PTPRD-202ENST00000356435 AIMP1Q12904 312 aaKnown RBP6.64□□□□□ -1.35
PTPRD-202ENST00000356435 FSD1Q9BTV5 496 aa6.64□□□□□ -1.35
PTPRD-202ENST00000356435 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.64□□□□□ -1.35
PTPRD-202ENST00000356435 RPRD2Q5VT52 1461 aaKnown RBP6.64□□□□□ -1.35
PTPRD-202ENST00000356435 ST20-MTHFSA0A0A6YYL1 179 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms