RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 TERF1P54274 439 aa15.02■□□□□ -0
COL6A3-203ENST00000353578 FEZ1Q99689 392 aa15.02■□□□□ -0
COL6A3-203ENST00000353578 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.02■□□□□ -0
COL6A3-203ENST00000353578 MEX3CQ5U5Q3 659 aaKnown RBP15.02■□□□□ -0
COL6A3-203ENST00000353578 ZSCAN12O43309 604 aa15.02■□□□□ -0
COL6A3-203ENST00000353578 CRACR2AQ9BSW2 395 aa15.02□□□□□ -0.01
COL6A3-203ENST00000353578 PLPPR3Q6T4P5 718 aa15.02□□□□□ -0.01
COL6A3-203ENST00000353578 SIN3AQ96ST3 1273 aa15.02□□□□□ -0.01
COL6A3-203ENST00000353578 AEBP1Q8IUX7 1158 aa15.02□□□□□ -0.01
COL6A3-203ENST00000353578 TMCO5BA8MYB1 307 aa15.01□□□□□ -0.01
COL6A3-203ENST00000353578 CLASRPQ8N2M8 674 aaKnown RBP15.01□□□□□ -0.01
COL6A3-203ENST00000353578 WDR33Q9C0J8 1336 aaKnown RBP15.01□□□□□ -0.01
COL6A3-203ENST00000353578 RSPH4AQ5TD94 716 aa15.01□□□□□ -0.01
COL6A3-203ENST00000353578 SYNE3Q6ZMZ3 975 aa15.01□□□□□ -0.01
COL6A3-203ENST00000353578 RBM10P98175 930 aaKnown RBP15.01□□□□□ -0.01
COL6A3-203ENST00000353578 ZNF396Q96N95 335 aaPredicted RBP15.01□□□□□ -0.01
COL6A3-203ENST00000353578 HDGFL2Q7Z4V5 671 aaPredicted RBP15□□□□□ -0.01
COL6A3-203ENST00000353578 BACH2Q9BYV9 841 aa15□□□□□ -0.01
COL6A3-203ENST00000353578 FYB1O15117 783 aa15□□□□□ -0.01
COL6A3-203ENST00000353578 SAFBQ15424 915 aaKnown RBP eCLIP15□□□□□ -0.01
COL6A3-203ENST00000353578 DHX29Q7Z478 1369 aaKnown RBP15□□□□□ -0.01
COL6A3-203ENST00000353578 SMG6Q86US8 1419 aaKnown RBP15□□□□□ -0.01
COL6A3-203ENST00000353578 A6NNZ2 444 aa15□□□□□ -0.01
COL6A3-203ENST00000353578 TUBB8Q3ZCM7 444 aa15□□□□□ -0.01
COL6A3-203ENST00000353578 CCDC94Q9BW85 323 aaPredicted RBP15□□□□□ -0.01
COL6A3-203ENST00000353578 NPM1P06748 294 aaKnown RBP eCLIP15□□□□□ -0.01
COL6A3-203ENST00000353578 TUBBP07437 444 aa14.99□□□□□ -0.01
COL6A3-203ENST00000353578 DNAAF4Q8WXU2 420 aa14.99□□□□□ -0.01
COL6A3-203ENST00000353578 CCDC144AA2RUR9 1427 aa14.99□□□□□ -0.01
COL6A3-203ENST00000353578 FAM193AP78312 1265 aa14.99□□□□□ -0.01
COL6A3-203ENST00000353578 POGKQ9P215 609 aa14.99□□□□□ -0.01
COL6A3-203ENST00000353578 CT47A1Q5JQC4 288 aaPredicted RBP14.99□□□□□ -0.01
COL6A3-203ENST00000353578 FAM114A1Q8IWE2 563 aa14.99□□□□□ -0.01
COL6A3-203ENST00000353578 TXLNAP40222 546 aa14.99□□□□□ -0.01
COL6A3-203ENST00000353578 BMS1Q14692 1282 aaKnown RBP14.99□□□□□ -0.01
COL6A3-203ENST00000353578 ARID3CA6NKF2 412 aa14.99□□□□□ -0.01
COL6A3-203ENST00000353578 HSP90AB4PQ58FF6 505 aa14.99□□□□□ -0.01
COL6A3-203ENST00000353578 DHX16O60231 1041 aaKnown RBP14.99□□□□□ -0.01
COL6A3-203ENST00000353578 MIA2Q96PC5 1412 aa14.98□□□□□ -0.01
COL6A3-203ENST00000353578 CCDC18Q5T9S5 1454 aa14.98□□□□□ -0.01
COL6A3-203ENST00000353578 TDO2P48775 406 aa14.98□□□□□ -0.01
COL6A3-203ENST00000353578 PCMTD1Q96MG8 357 aaPredicted RBP14.98□□□□□ -0.01
COL6A3-203ENST00000353578 GIGYF2Q6Y7W6 1299 aaKnown RBP14.98□□□□□ -0.01
COL6A3-203ENST00000353578 FRAT2O75474 233 aaPredicted RBP14.98□□□□□ -0.01
COL6A3-203ENST00000353578 HDGFP51858 240 aaKnown RBP14.98□□□□□ -0.01
COL6A3-203ENST00000353578 CLUAP1Q96AJ1 413 aa14.98□□□□□ -0.01
COL6A3-203ENST00000353578 CCDC83Q8IWF9 413 aa14.97□□□□□ -0.01
COL6A3-203ENST00000353578 DCAF11Q8TEB1 546 aa14.97□□□□□ -0.01
COL6A3-203ENST00000353578 HIP1O00291 1037 aa14.97□□□□□ -0.01
COL6A3-203ENST00000353578 CPLX1O14810 134 aa14.97□□□□□ -0.01
COL6A3-203ENST00000353578 U2AF1L5P0DN76 240 aaPredicted RBP14.97□□□□□ -0.01
COL6A3-203ENST00000353578 U2AF1Q01081 240 aaKnown RBP eCLIP14.97□□□□□ -0.01
COL6A3-203ENST00000353578 ERC2O15083 957 aa14.97□□□□□ -0.01
COL6A3-203ENST00000353578 WASHC2AQ641Q2 1341 aa14.97□□□□□ -0.01
COL6A3-203ENST00000353578 WASHC2CQ9Y4E1 1318 aa14.97□□□□□ -0.01
COL6A3-203ENST00000353578 TERF2IPQ9NYB0 399 aa14.97□□□□□ -0.01
COL6A3-203ENST00000353578 SMC2O95347 1197 aa14.97□□□□□ -0.01
COL6A3-203ENST00000353578 MNAT1P51948 309 aa14.97□□□□□ -0.01
COL6A3-203ENST00000353578 SEPT6Q14141 434 aa14.97□□□□□ -0.01
COL6A3-203ENST00000353578 PLCD4Q9BRC7 762 aa14.97□□□□□ -0.01
COL6A3-203ENST00000353578 NOL10Q9BSC4 688 aaKnown RBP14.96□□□□□ -0.01
COL6A3-203ENST00000353578 ANKRD1Q15327 319 aa14.96□□□□□ -0.01
COL6A3-203ENST00000353578 TULP1O00294 542 aaPredicted RBP14.96□□□□□ -0.01
COL6A3-203ENST00000353578 SPECC1LQ69YQ0 1117 aa14.96□□□□□ -0.02
COL6A3-203ENST00000353578 DHX57Q6P158 1386 aaKnown RBP14.96□□□□□ -0.02
COL6A3-203ENST00000353578 MCM4P33991 863 aa14.96□□□□□ -0.02
COL6A3-203ENST00000353578 GSDMDP57764 484 aa14.96□□□□□ -0.02
COL6A3-203ENST00000353578 SDF4Q9BRK5 362 aa14.96□□□□□ -0.02
COL6A3-203ENST00000353578 ERICH4A6NGS2 130 aa14.95□□□□□ -0.02
COL6A3-203ENST00000353578 A0A1B0GUA9 196 aa14.95□□□□□ -0.02
COL6A3-203ENST00000353578 CFAP57Q96MR6 1250 aa14.95□□□□□ -0.02
COL6A3-203ENST00000353578 BRMS1Q9HCU9 246 aa14.95□□□□□ -0.02
COL6A3-203ENST00000353578 CEP57L1Q8IYX8 460 aa14.95□□□□□ -0.02
COL6A3-203ENST00000353578 API5Q9BZZ5 524 aaKnown RBP14.95□□□□□ -0.02
COL6A3-203ENST00000353578 CCDC148Q8NFR7 591 aa14.95□□□□□ -0.02
COL6A3-203ENST00000353578 NAP1L1P55209 391 aaKnown RBP14.95□□□□□ -0.02
COL6A3-203ENST00000353578 GORABQ5T7V8 394 aa14.95□□□□□ -0.02
COL6A3-203ENST00000353578 ANKRD45Q5TZF3 282 aa14.95□□□□□ -0.02
COL6A3-203ENST00000353578 MIPOL1Q8TD10 442 aa14.95□□□□□ -0.02
COL6A3-203ENST00000353578 POLA1P09884 1462 aaPredicted RBP14.95□□□□□ -0.02
COL6A3-203ENST00000353578 SARNPP82979 210 aaKnown RBP14.94□□□□□ -0.02
COL6A3-203ENST00000353578 FOXD4L1Q9NU39 408 aa14.94□□□□□ -0.02
COL6A3-203ENST00000353578 SRRTQ9BXP5 876 aaKnown RBP14.94□□□□□ -0.02
COL6A3-203ENST00000353578 CRBNQ96SW2 442 aa14.94□□□□□ -0.02
COL6A3-203ENST00000353578 SEPT7Q16181 437 aaKnown RBP14.94□□□□□ -0.02
COL6A3-203ENST00000353578 CCDC102AQ96A19 550 aa14.94□□□□□ -0.02
COL6A3-203ENST00000353578 DZIP1LQ8IYY4 767 aaKnown RBP14.94□□□□□ -0.02
COL6A3-203ENST00000353578 IMMTQ16891 758 aaKnown RBP14.93□□□□□ -0.02
COL6A3-203ENST00000353578 CCDC7Q96M83 1385 aa14.93□□□□□ -0.02
COL6A3-203ENST00000353578 XBP1P17861 261 aa14.93□□□□□ -0.02
COL6A3-203ENST00000353578 PTPN14Q15678 1187 aa14.93□□□□□ -0.02
COL6A3-203ENST00000353578 TMX4Q9H1E5 349 aaPredicted RBP14.93□□□□□ -0.02
COL6A3-203ENST00000353578 PDE3AQ14432 1141 aa14.93□□□□□ -0.02
COL6A3-203ENST00000353578 PPFIBP1Q86W92 1011 aa14.93□□□□□ -0.02
COL6A3-203ENST00000353578 EXOC6Q8TAG9 804 aa14.93□□□□□ -0.02
COL6A3-203ENST00000353578 ODF2Q5BJF6 829 aa14.93□□□□□ -0.02
COL6A3-203ENST00000353578 PPM1EQ8WY54 764 aa14.93□□□□□ -0.02
COL6A3-203ENST00000353578 SMTNL1A8MU46 457 aa14.93□□□□□ -0.02
COL6A3-203ENST00000353578 ATAD2Q6PL18 1390 aa14.93□□□□□ -0.02
COL6A3-203ENST00000353578 CCDC50Q8IVM0 306 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 122.9 ms