RNA–Protein interactions for RNA: ENST00000347037.9

SYNE1-202, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 3,798 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-202ENST00000347037 RUNDC1Q96C34 613 aa14.1□□□□□ -0.15
SYNE1-202ENST00000347037 GLI2P10070 1586 aa14.09□□□□□ -0.15
SYNE1-202ENST00000347037 GOLGA6L3A6NEY3 463 aa14.09□□□□□ -0.15
SYNE1-202ENST00000347037 CHGAP10645 457 aaKnown RBP14.09□□□□□ -0.15
SYNE1-202ENST00000347037 FTSJ3Q8IY81 847 aaKnown RBP14.09□□□□□ -0.15
SYNE1-202ENST00000347037 UBE2Q2Q8WVN8 375 aa14.09□□□□□ -0.15
SYNE1-202ENST00000347037 MYOM1P52179 1685 aa14.09□□□□□ -0.15
SYNE1-202ENST00000347037 SCAPERQ9BY12 1400 aa14.09□□□□□ -0.15
SYNE1-202ENST00000347037 NLRP1Q9C000 1473 aa14.08□□□□□ -0.15
SYNE1-202ENST00000347037 CFAP74Q9C0B2 1584 aa14.08□□□□□ -0.15
SYNE1-202ENST00000347037 KDM5AP29375 1690 aaKnown RBP14.08□□□□□ -0.15
SYNE1-202ENST00000347037 VIRMAQ69YN4 1812 aaKnown RBP14.08□□□□□ -0.16
SYNE1-202ENST00000347037 MROH1Q8NDA8 1641 aa14.08□□□□□ -0.16
SYNE1-202ENST00000347037 ADGRF5Q8IZF2 1346 aa14.08□□□□□ -0.16
SYNE1-202ENST00000347037 FANCAO15360 1455 aa14.07□□□□□ -0.16
SYNE1-202ENST00000347037 RICTORQ6R327 1708 aa14.06□□□□□ -0.16
SYNE1-202ENST00000347037 VWDEQ8N2E2 1590 aa14.06□□□□□ -0.16
SYNE1-202ENST00000347037 STAC3Q96MF2 364 aa14.06□□□□□ -0.16
SYNE1-202ENST00000347037 KIF3BO15066 747 aa14.06□□□□□ -0.16
SYNE1-202ENST00000347037 PANK2Q9BZ23 570 aa14.06□□□□□ -0.16
SYNE1-202ENST00000347037 SLC12A5Q9H2X9 1139 aa14.06□□□□□ -0.16
SYNE1-202ENST00000347037 TRAK1Q9UPV9 953 aa14.06□□□□□ -0.16
SYNE1-202ENST00000347037 ERVK-7P63135 1459 aa14.06□□□□□ -0.16
SYNE1-202ENST00000347037 XRCC6P12956 609 aaKnown RBP eCLIP14.06□□□□□ -0.16
SYNE1-202ENST00000347037 MCM4P33991 863 aa14.06□□□□□ -0.16
SYNE1-202ENST00000347037 C22orf23Q9BZE7 217 aa14.06□□□□□ -0.16
SYNE1-202ENST00000347037 POLR3AO14802 1390 aaPredicted RBP14.06□□□□□ -0.16
SYNE1-202ENST00000347037 RTEL1-TNFRSF6BF6WH68 1400 aa14.06□□□□□ -0.16
SYNE1-202ENST00000347037 NSD3Q9BZ95 1437 aa14.06□□□□□ -0.16
SYNE1-202ENST00000347037 NAP1L5Q96NT1 182 aaPredicted RBP14.05□□□□□ -0.16
SYNE1-202ENST00000347037 MTHFSP49914 203 aa14.05□□□□□ -0.16
SYNE1-202ENST00000347037 SLC24A1O60721 1099 aa14.05□□□□□ -0.16
SYNE1-202ENST00000347037 CLTCL1P53675 1640 aa14.05□□□□□ -0.16
SYNE1-202ENST00000347037 SPHKAPQ2M3C7 1700 aa14.04□□□□□ -0.16
SYNE1-202ENST00000347037 DIP2BQ9P265 1576 aa14.04□□□□□ -0.16
SYNE1-202ENST00000347037 U2AF1L5P0DN76 240 aaPredicted RBP14.04□□□□□ -0.16
SYNE1-202ENST00000347037 U2AF1Q01081 240 aaKnown RBP eCLIP14.04□□□□□ -0.16
SYNE1-202ENST00000347037 TRPM2O94759 1503 aa14.04□□□□□ -0.16
SYNE1-202ENST00000347037 KIF13AQ9H1H9 1805 aa14.04□□□□□ -0.16
SYNE1-202ENST00000347037 KANK1Q14678 1352 aa14.04□□□□□ -0.16
SYNE1-202ENST00000347037 CFAP53Q96M91 514 aa14.04□□□□□ -0.16
SYNE1-202ENST00000347037 MVPQ14764 893 aaKnown RBP14.03□□□□□ -0.16
SYNE1-202ENST00000347037 MYH16Q9H6N6 1097 aa14.03□□□□□ -0.16
SYNE1-202ENST00000347037 FRMPD1Q5SYB0 1578 aa14.03□□□□□ -0.16
SYNE1-202ENST00000347037 ATP7AQ04656 1500 aa14.03□□□□□ -0.16
SYNE1-202ENST00000347037 ZKSCAN2Q63HK3 967 aa14.03□□□□□ -0.16
SYNE1-202ENST00000347037 WDR63Q8IWG1 891 aa14.03□□□□□ -0.16
SYNE1-202ENST00000347037 TSR2Q969E8 191 aaKnown RBP14.03□□□□□ -0.16
SYNE1-202ENST00000347037 TRAK2O60296 914 aa14.03□□□□□ -0.16
SYNE1-202ENST00000347037 AAMPQ13685 434 aa14.03□□□□□ -0.16
SYNE1-202ENST00000347037 ITPRIPQ8IWB1 547 aa14.03□□□□□ -0.16
SYNE1-202ENST00000347037 DZIP1LQ8IYY4 767 aaKnown RBP14.02□□□□□ -0.16
SYNE1-202ENST00000347037 SMC4Q9NTJ3 1288 aa14.02□□□□□ -0.16
SYNE1-202ENST00000347037 CHMP5Q9NZZ3 219 aa14.02□□□□□ -0.16
SYNE1-202ENST00000347037 CEP152O94986 1710 aa14.02□□□□□ -0.17
SYNE1-202ENST00000347037 HSCBQ8IWL3 235 aa14.02□□□□□ -0.17
SYNE1-202ENST00000347037 PNNQ9H307 717 aaKnown RBP14.01□□□□□ -0.17
SYNE1-202ENST00000347037 UGGT1Q9NYU2 1555 aa14□□□□□ -0.17
SYNE1-202ENST00000347037 PTPRTO14522 1441 aa14□□□□□ -0.17
SYNE1-202ENST00000347037 TMEM132EQ6IEE7 984 aa13.99□□□□□ -0.17
SYNE1-202ENST00000347037 SENP3Q9H4L4 574 aaPredicted RBP13.99□□□□□ -0.17
SYNE1-202ENST00000347037 ABCA6Q8N139 1617 aa13.99□□□□□ -0.17
SYNE1-202ENST00000347037 U2SURPO15042 1029 aaKnown RBP13.99□□□□□ -0.17
SYNE1-202ENST00000347037 ADGRL1O94910 1474 aa13.98□□□□□ -0.17
SYNE1-202ENST00000347037 EXOSC9Q06265 439 aaKnown RBP13.98□□□□□ -0.17
SYNE1-202ENST00000347037 FSD2A1L4K1 749 aa13.97□□□□□ -0.17
SYNE1-202ENST00000347037 HECW2Q9P2P5 1572 aa13.96□□□□□ -0.17
SYNE1-202ENST00000347037 TRIM27P14373 513 aa13.96□□□□□ -0.17
SYNE1-202ENST00000347037 PHF23Q9BUL5 403 aaPredicted RBP13.96□□□□□ -0.17
SYNE1-202ENST00000347037 FOXD4L1Q9NU39 408 aa13.96□□□□□ -0.17
SYNE1-202ENST00000347037 POGZQ7Z3K3 1410 aa13.96□□□□□ -0.17
SYNE1-202ENST00000347037 HSP90AA1P07900 732 aaKnown RBP13.95□□□□□ -0.18
SYNE1-202ENST00000347037 MRE11P49959 708 aa13.95□□□□□ -0.18
SYNE1-202ENST00000347037 SAFB2Q14151 953 aaKnown RBP eCLIP13.95□□□□□ -0.18
SYNE1-202ENST00000347037 NEO1Q92859 1461 aa13.95□□□□□ -0.18
SYNE1-202ENST00000347037 TET3O43151 1660 aa13.95□□□□□ -0.18
SYNE1-202ENST00000347037 HSP90AB1P08238 724 aaKnown RBP13.95□□□□□ -0.18
SYNE1-202ENST00000347037 ZMYM3Q14202 1370 aa13.95□□□□□ -0.18
SYNE1-202ENST00000347037 DDX11L8A8MPP1 907 aa13.95□□□□□ -0.18
SYNE1-202ENST00000347037 NUTM2DQ5VT03 806 aaPredicted RBP13.95□□□□□ -0.18
SYNE1-202ENST00000347037 SSH1Q8WYL5 1049 aa13.95□□□□□ -0.18
SYNE1-202ENST00000347037 NOB1Q9ULX3 412 aaKnown RBP13.95□□□□□ -0.18
SYNE1-202ENST00000347037 CD109Q6YHK3 1445 aa13.94□□□□□ -0.18
SYNE1-202ENST00000347037 CCDC27Q2M243 656 aa13.94□□□□□ -0.18
SYNE1-202ENST00000347037 LNPKQ9C0E8 428 aa13.94□□□□□ -0.18
SYNE1-202ENST00000347037 GRPEL1Q9HAV7 217 aa13.94□□□□□ -0.18
SYNE1-202ENST00000347037 DDX19BQ9UMR2 479 aa13.94□□□□□ -0.18
SYNE1-202ENST00000347037 IQSEC2Q5JU85 1478 aa13.94□□□□□ -0.18
SYNE1-202ENST00000347037 MLH3Q9UHC1 1453 aa13.93□□□□□ -0.18
SYNE1-202ENST00000347037 NOS1P29475 1434 aa13.93□□□□□ -0.18
SYNE1-202ENST00000347037 SIGLEC1Q9BZZ2 1709 aa13.93□□□□□ -0.18
SYNE1-202ENST00000347037 ZNF518AQ6AHZ1 1483 aa13.93□□□□□ -0.18
SYNE1-202ENST00000347037 SHPRHQ149N8 1683 aa13.93□□□□□ -0.18
SYNE1-202ENST00000347037 TMEM57Q8N5G2 664 aa13.93□□□□□ -0.18
SYNE1-202ENST00000347037 ATF7IPQ6VMQ6 1270 aa13.93□□□□□ -0.18
SYNE1-202ENST00000347037 CLCN1P35523 988 aa13.92□□□□□ -0.18
SYNE1-202ENST00000347037 DIP2CQ9Y2E4 1556 aa13.92□□□□□ -0.18
SYNE1-202ENST00000347037 TRIM44Q96DX7 344 aaPredicted RBP13.92□□□□□ -0.18
SYNE1-202ENST00000347037 HDAC1Q13547 482 aaPredicted RBP13.91□□□□□ -0.18
SYNE1-202ENST00000347037 KIAA1210Q9ULL0 1709 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms