RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 PRAM1Q96QH2 718 aa17.26■□□□□ 0.35
CLK3-201ENST00000345005 ABCC11Q96J66 1382 aa17.26■□□□□ 0.35
CLK3-201ENST00000345005 KNDC1Q76NI1 1749 aa17.26■□□□□ 0.35
CLK3-201ENST00000345005 AMER1Q5JTC6 1135 aaPredicted RBP17.26■□□□□ 0.35
CLK3-201ENST00000345005 SLIT1O75093 1534 aa17.25■□□□□ 0.35
CLK3-201ENST00000345005 THEMISQ8N1K5 641 aaPredicted RBP17.25■□□□□ 0.35
CLK3-201ENST00000345005 EID1Q9Y6B2 187 aa17.25■□□□□ 0.35
CLK3-201ENST00000345005 SETD1BQ9UPS6 1966 aaKnown RBP17.25■□□□□ 0.35
CLK3-201ENST00000345005 SAFB2Q14151 953 aaKnown RBP eCLIP17.24■□□□□ 0.35
CLK3-201ENST00000345005 PLPPR3Q6T4P5 718 aa17.24■□□□□ 0.35
CLK3-201ENST00000345005 PNISRQ8TF01 805 aaKnown RBP17.24■□□□□ 0.35
CLK3-201ENST00000345005 PLEKHG1Q9ULL1 1385 aa17.24■□□□□ 0.35
CLK3-201ENST00000345005 ARHGAP23Q9P227 1491 aa17.24■□□□□ 0.35
CLK3-201ENST00000345005 BCANQ96GW7 911 aa17.24■□□□□ 0.35
CLK3-201ENST00000345005 TXNDC2Q86VQ3 553 aa17.23■□□□□ 0.35
CLK3-201ENST00000345005 SIRT1Q96EB6 747 aa17.22■□□□□ 0.35
CLK3-201ENST00000345005 RBM19Q9Y4C8 960 aaKnown RBP17.22■□□□□ 0.35
CLK3-201ENST00000345005 NINLQ9Y2I6 1382 aa17.22■□□□□ 0.35
CLK3-201ENST00000345005 METP08581 1390 aa17.21■□□□□ 0.35
CLK3-201ENST00000345005 MINK1Q8N4C8 1332 aaPredicted RBP17.21■□□□□ 0.35
CLK3-201ENST00000345005 LTKP29376 864 aa17.21■□□□□ 0.35
CLK3-201ENST00000345005 CARD14Q9BXL6 1004 aa17.21■□□□□ 0.35
CLK3-201ENST00000345005 SLC12A5Q9H2X9 1139 aa17.21■□□□□ 0.35
CLK3-201ENST00000345005 CABP2Q9NPB3 220 aa17.2■□□□□ 0.34
CLK3-201ENST00000345005 USP32Q8NFA0 1604 aa17.2■□□□□ 0.34
CLK3-201ENST00000345005 SRPK2P78362 688 aaKnown RBP17.19■□□□□ 0.34
CLK3-201ENST00000345005 ATAD2Q6PL18 1390 aa17.19■□□□□ 0.34
CLK3-201ENST00000345005 CEP170BQ9Y4F5 1589 aaPredicted RBP17.19■□□□□ 0.34
CLK3-201ENST00000345005 ADAMTS13Q76LX8 1427 aa17.19■□□□□ 0.34
CLK3-201ENST00000345005 TECPR2O15040 1411 aa17.18■□□□□ 0.34
CLK3-201ENST00000345005 FAM135BQ49AJ0 1406 aa17.18■□□□□ 0.34
CLK3-201ENST00000345005 CPS1P31327 1500 aa17.18■□□□□ 0.34
CLK3-201ENST00000345005 ZNF142P52746 1687 aaPredicted RBP17.17■□□□□ 0.34
CLK3-201ENST00000345005 MED14O60244 1454 aa17.17■□□□□ 0.34
CLK3-201ENST00000345005 ANKRD36BQ8N2N9 1353 aa17.17■□□□□ 0.34
CLK3-201ENST00000345005 WAPLQ7Z5K2 1190 aa17.17■□□□□ 0.34
CLK3-201ENST00000345005 ZBED9Q6R2W3 1325 aa17.16■□□□□ 0.34
CLK3-201ENST00000345005 NSD3Q9BZ95 1437 aa17.16■□□□□ 0.34
CLK3-201ENST00000345005 PPP2R1AP30153 589 aa17.16■□□□□ 0.34
CLK3-201ENST00000345005 CDK19Q9BWU1 502 aa17.16■□□□□ 0.34
CLK3-201ENST00000345005 DIP2AQ14689 1571 aa17.15■□□□□ 0.34
CLK3-201ENST00000345005 PLEKHH1Q9ULM0 1364 aa17.14■□□□□ 0.33
CLK3-201ENST00000345005 LMTK3Q96Q04 1460 aa17.14■□□□□ 0.33
CLK3-201ENST00000345005 TBX22Q9Y458 520 aa17.14■□□□□ 0.33
CLK3-201ENST00000345005 CGNL1Q0VF96 1302 aa17.14■□□□□ 0.33
CLK3-201ENST00000345005 FANCIQ9NVI1 1328 aa17.14■□□□□ 0.33
CLK3-201ENST00000345005 TERF2IPQ9NYB0 399 aa17.12■□□□□ 0.33
CLK3-201ENST00000345005 INSRP06213 1382 aa17.12■□□□□ 0.33
CLK3-201ENST00000345005 NSD2O96028 1365 aa17.11■□□□□ 0.33
CLK3-201ENST00000345005 SLC26A8Q96RN1 970 aa17.1■□□□□ 0.33
CLK3-201ENST00000345005 WASLO00401 505 aaPredicted RBP17.1■□□□□ 0.33
CLK3-201ENST00000345005 HDGFL2Q7Z4V5 671 aaPredicted RBP17.09■□□□□ 0.33
CLK3-201ENST00000345005 MORC1Q86VD1 984 aa17.09■□□□□ 0.33
CLK3-201ENST00000345005 A0A1W2PP64 1363 aa17.08■□□□□ 0.33
CLK3-201ENST00000345005 ROBO2Q9HCK4 1378 aa17.08■□□□□ 0.32
CLK3-201ENST00000345005 ANKRD26Q9UPS8 1709 aa17.07■□□□□ 0.32
CLK3-201ENST00000345005 ADGRB2O60241 1585 aa17.07■□□□□ 0.32
CLK3-201ENST00000345005 ANKLE2Q86XL3 938 aa17.07■□□□□ 0.32
CLK3-201ENST00000345005 PTPRUQ92729 1446 aa17.07■□□□□ 0.32
CLK3-201ENST00000345005 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.06■□□□□ 0.32
CLK3-201ENST00000345005 ERICH6Q7L0X2 663 aa17.06■□□□□ 0.32
CLK3-201ENST00000345005 CABP1Q9NZU7 370 aa17.06■□□□□ 0.32
CLK3-201ENST00000345005 ATP7BP35670 1465 aa17.06■□□□□ 0.32
CLK3-201ENST00000345005 CD163L1Q9NR16 1453 aa17.06■□□□□ 0.32
CLK3-201ENST00000345005 HSPA2P54652 639 aa17.05■□□□□ 0.32
CLK3-201ENST00000345005 PPP4R2Q9NY27 417 aa17.05■□□□□ 0.32
CLK3-201ENST00000345005 AMOTL2Q9Y2J4 779 aa17.05■□□□□ 0.32
CLK3-201ENST00000345005 PIK3R4Q99570 1358 aa17.05■□□□□ 0.32
CLK3-201ENST00000345005 KIF20BQ96Q89 1820 aa17.05■□□□□ 0.32
CLK3-201ENST00000345005 WDR43Q15061 677 aaKnown RBP eCLIP17.05■□□□□ 0.32
CLK3-201ENST00000345005 PTCH1Q13635 1447 aa17.04■□□□□ 0.32
CLK3-201ENST00000345005 XRN1Q8IZH2 1706 aaKnown RBP17.04■□□□□ 0.32
CLK3-201ENST00000345005 BLMP54132 1417 aaPredicted RBP17.03■□□□□ 0.32
CLK3-201ENST00000345005 NUDT16Q96DE0 195 aaKnown RBP17.03■□□□□ 0.32
CLK3-201ENST00000345005 CHD2O14647 1828 aaKnown RBP17.02■□□□□ 0.32
CLK3-201ENST00000345005 ITSN1Q15811 1721 aa17.02■□□□□ 0.32
CLK3-201ENST00000345005 CCDC61Q9Y6R9 512 aa17.02■□□□□ 0.31
CLK3-201ENST00000345005 POLR3AO14802 1390 aaPredicted RBP17.02■□□□□ 0.31
CLK3-201ENST00000345005 PPIP5K1Q6PFW1 1433 aa17.02■□□□□ 0.31
CLK3-201ENST00000345005 AKAP12Q02952 1782 aa17.01■□□□□ 0.31
CLK3-201ENST00000345005 ADAMTS8Q9UP79 889 aa17.01■□□□□ 0.31
CLK3-201ENST00000345005 CDC42BPGQ6DT37 1551 aa17■□□□□ 0.31
CLK3-201ENST00000345005 CPSF1Q10570 1443 aaKnown RBP16.99■□□□□ 0.31
CLK3-201ENST00000345005 MON2Q7Z3U7 1717 aa16.99■□□□□ 0.31
CLK3-201ENST00000345005 FYB1O15117 783 aa16.98■□□□□ 0.31
CLK3-201ENST00000345005 TOPAZ1Q8N9V7 1692 aa16.98■□□□□ 0.31
CLK3-201ENST00000345005 SMG6Q86US8 1419 aaKnown RBP16.98■□□□□ 0.31
CLK3-201ENST00000345005 TNNT2P45379 298 aaPredicted RBP16.98■□□□□ 0.31
CLK3-201ENST00000345005 CFAP53Q96M91 514 aa16.97■□□□□ 0.31
CLK3-201ENST00000345005 ZNF692Q9BU19 519 aaPredicted RBP16.97■□□□□ 0.31
CLK3-201ENST00000345005 EDC4Q6P2E9 1401 aaKnown RBP16.96■□□□□ 0.31
CLK3-201ENST00000345005 GGNBP2Q9H3C7 697 aa16.96■□□□□ 0.31
CLK3-201ENST00000345005 MTHFSP49914 203 aa16.96■□□□□ 0.3
CLK3-201ENST00000345005 PDE3BQ13370 1112 aa16.96■□□□□ 0.3
CLK3-201ENST00000345005 SHPRHQ149N8 1683 aa16.95■□□□□ 0.3
CLK3-201ENST00000345005 NUDCQ9Y266 331 aa16.95■□□□□ 0.3
CLK3-201ENST00000345005 PRR36Q9H6K5 1346 aa16.95■□□□□ 0.3
CLK3-201ENST00000345005 NPHP4O75161 1426 aaPredicted RBP16.94■□□□□ 0.3
CLK3-201ENST00000345005 KCNA6P17658 529 aa16.93■□□□□ 0.3
CLK3-201ENST00000345005 RGPD8O14715 1765 aaPredicted RBP16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms