RNA–Protein interactions for RNA: ENST00000342220.9

COL18A1-201, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 3,386 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-201ENST00000342220 CAMSAP1Q5T5Y3 1602 aa17.28■□□□□ 0.36
COL18A1-201ENST00000342220 PPP6R1Q9UPN7 881 aa17.28■□□□□ 0.36
COL18A1-201ENST00000342220 ERVK-7P63135 1459 aa17.27■□□□□ 0.36
COL18A1-201ENST00000342220 PIK3C2BO00750 1634 aa17.27■□□□□ 0.36
COL18A1-201ENST00000342220 THEMISQ8N1K5 641 aaPredicted RBP17.26■□□□□ 0.35
COL18A1-201ENST00000342220 NBR1Q14596 966 aa17.26■□□□□ 0.35
COL18A1-201ENST00000342220 AMER1Q5JTC6 1135 aaPredicted RBP17.26■□□□□ 0.35
COL18A1-201ENST00000342220 PAK3O75914 559 aaPredicted RBP17.25■□□□□ 0.35
COL18A1-201ENST00000342220 HDGFL2Q7Z4V5 671 aaPredicted RBP17.25■□□□□ 0.35
COL18A1-201ENST00000342220 CDCA7LQ96GN5 454 aa17.25■□□□□ 0.35
COL18A1-201ENST00000342220 HSPA2P54652 639 aa17.25■□□□□ 0.35
COL18A1-201ENST00000342220 FANCIQ9NVI1 1328 aa17.25■□□□□ 0.35
COL18A1-201ENST00000342220 AMOTL2Q9Y2J4 779 aa17.25■□□□□ 0.35
COL18A1-201ENST00000342220 MADDQ8WXG6 1647 aa17.25■□□□□ 0.35
COL18A1-201ENST00000342220 KIF1BO60333 1816 aa17.25■□□□□ 0.35
COL18A1-201ENST00000342220 NSD3Q9BZ95 1437 aa17.24■□□□□ 0.35
COL18A1-201ENST00000342220 METP08581 1390 aa17.24■□□□□ 0.35
COL18A1-201ENST00000342220 MTHFSP49914 203 aa17.24■□□□□ 0.35
COL18A1-201ENST00000342220 SIGLEC1Q9BZZ2 1709 aa17.24■□□□□ 0.35
COL18A1-201ENST00000342220 CLTCQ00610 1675 aaKnown RBP17.23■□□□□ 0.35
COL18A1-201ENST00000342220 AGLP35573 1532 aa17.23■□□□□ 0.35
COL18A1-201ENST00000342220 PIK3C2GO75747 1445 aa17.23■□□□□ 0.35
COL18A1-201ENST00000342220 TERF2IPQ9NYB0 399 aa17.23■□□□□ 0.35
COL18A1-201ENST00000342220 ZRANB1Q9UGI0 708 aa17.23■□□□□ 0.35
COL18A1-201ENST00000342220 U2AF1L5P0DN76 240 aaPredicted RBP17.23■□□□□ 0.35
COL18A1-201ENST00000342220 U2AF1Q01081 240 aaKnown RBP eCLIP17.23■□□□□ 0.352e-9■■■□□ 17.5
COL18A1-201ENST00000342220 SYNMO15061 1565 aa17.22■□□□□ 0.35
COL18A1-201ENST00000342220 MROH2AA6NES4 1674 aa17.22■□□□□ 0.35
COL18A1-201ENST00000342220 CGNL1Q0VF96 1302 aa17.21■□□□□ 0.35
COL18A1-201ENST00000342220 APAF1O14727 1248 aa17.21■□□□□ 0.35
COL18A1-201ENST00000342220 SLC24A1O60721 1099 aa17.21■□□□□ 0.35
COL18A1-201ENST00000342220 NGDNQ8NEJ9 315 aaKnown RBP17.2■□□□□ 0.34
COL18A1-201ENST00000342220 YTHDC2Q9H6S0 1430 aaKnown RBP17.2■□□□□ 0.34
COL18A1-201ENST00000342220 SMG6Q86US8 1419 aaKnown RBP17.2■□□□□ 0.34
COL18A1-201ENST00000342220 ARHGAP31Q2M1Z3 1444 aa17.19■□□□□ 0.34
COL18A1-201ENST00000342220 IQGAP1P46940 1657 aa17.19■□□□□ 0.34
COL18A1-201ENST00000342220 XPCQ01831 940 aaPredicted RBP17.19■□□□□ 0.34
COL18A1-201ENST00000342220 ADGRB3O60242 1522 aa17.19■□□□□ 0.34
COL18A1-201ENST00000342220 ARHGEF40Q8TER5 1519 aa17.19■□□□□ 0.34
COL18A1-201ENST00000342220 IL27Q8NEV9 243 aa17.19■□□□□ 0.34
COL18A1-201ENST00000342220 NUDT16Q96DE0 195 aaKnown RBP17.19■□□□□ 0.34
COL18A1-201ENST00000342220 NUDCQ9Y266 331 aa17.19■□□□□ 0.34
COL18A1-201ENST00000342220 NME9Q86XW9 330 aa17.17■□□□□ 0.34
COL18A1-201ENST00000342220 A2ML1A8K2U0 1454 aa17.17■□□□□ 0.34
COL18A1-201ENST00000342220 NRXN1Q9ULB1 1477 aa17.16■□□□□ 0.34
COL18A1-201ENST00000342220 PPLO60437 1756 aa17.16■□□□□ 0.34
COL18A1-201ENST00000342220 KCNA6P17658 529 aa17.16■□□□□ 0.34
COL18A1-201ENST00000342220 ANKLE2Q86XL3 938 aa17.16■□□□□ 0.34
COL18A1-201ENST00000342220 TMEM2Q9UHN6 1383 aa17.16■□□□□ 0.34
COL18A1-201ENST00000342220 CFAP53Q96M91 514 aa17.15■□□□□ 0.34
COL18A1-201ENST00000342220 WASLO00401 505 aaPredicted RBP17.15■□□□□ 0.34
COL18A1-201ENST00000342220 RRS1Q15050 365 aaKnown RBP17.15■□□□□ 0.34
COL18A1-201ENST00000342220 MYOM2P54296 1465 aa17.15■□□□□ 0.34
COL18A1-201ENST00000342220 BRD4O60885 1362 aaPredicted RBP17.15■□□□□ 0.34
COL18A1-201ENST00000342220 PLIN1O60240 522 aa17.14■□□□□ 0.33
COL18A1-201ENST00000342220 EIF5BO60841 1220 aaKnown RBP17.14■□□□□ 0.33
COL18A1-201ENST00000342220 HMOX1P09601 288 aa17.13■□□□□ 0.33
COL18A1-201ENST00000342220 LAS1LQ9Y4W2 734 aaKnown RBP17.13■□□□□ 0.33
COL18A1-201ENST00000342220 PREX1Q8TCU6 1659 aa17.13■□□□□ 0.33
COL18A1-201ENST00000342220 LTV1Q96GA3 475 aaPredicted RBP17.12■□□□□ 0.33
COL18A1-201ENST00000342220 PARD3Q8TEW0 1356 aa17.12■□□□□ 0.33
COL18A1-201ENST00000342220 FYB1O15117 783 aa17.11■□□□□ 0.33
COL18A1-201ENST00000342220 CCDC61Q9Y6R9 512 aa17.11■□□□□ 0.33
COL18A1-201ENST00000342220 A0A1W2PP64 1363 aa17.11■□□□□ 0.33
COL18A1-201ENST00000342220 RNF123Q5XPI4 1314 aa17.1■□□□□ 0.33
COL18A1-201ENST00000342220 NEXMIFQ5QGS0 1516 aa17.1■□□□□ 0.33
COL18A1-201ENST00000342220 MYO3AQ8NEV4 1616 aa17.09■□□□□ 0.33
COL18A1-201ENST00000342220 EMILIN1Q9Y6C2 1016 aa17.09■□□□□ 0.33
COL18A1-201ENST00000342220 ROBO2Q9HCK4 1378 aa17.08■□□□□ 0.32
COL18A1-201ENST00000342220 MYO5BQ9ULV0 1848 aa17.08■□□□□ 0.32
COL18A1-201ENST00000342220 ESCO1Q5FWF5 840 aa17.08■□□□□ 0.32
COL18A1-201ENST00000342220 COG3Q96JB2 828 aa17.07■□□□□ 0.32
COL18A1-201ENST00000342220 SETBP1Q9Y6X0 1596 aa17.06■□□□□ 0.32
COL18A1-201ENST00000342220 PROSER2Q86WR7 435 aaPredicted RBP17.06■□□□□ 0.32
COL18A1-201ENST00000342220 BCL2L13Q9BXK5 485 aa17.05■□□□□ 0.32
COL18A1-201ENST00000342220 LRPPRCP42704 1394 aaKnown RBP17.05■□□□□ 0.32
COL18A1-201ENST00000342220 NEFMP07197 916 aa17.05■□□□□ 0.32
COL18A1-201ENST00000342220 CANXP27824 592 aaKnown RBP17.05■□□□□ 0.32
COL18A1-201ENST00000342220 PKNOX2Q96KN3 472 aa17.05■□□□□ 0.32
COL18A1-201ENST00000342220 ATAD2Q6PL18 1390 aa17.04■□□□□ 0.32
COL18A1-201ENST00000342220 ACEP12821 1306 aa17.04■□□□□ 0.32
COL18A1-201ENST00000342220 KDM5AP29375 1690 aaKnown RBP17.04■□□□□ 0.32
COL18A1-201ENST00000342220 MAPK8IP3Q9UPT6 1336 aa17.03■□□□□ 0.32
COL18A1-201ENST00000342220 FOXO3O43524 673 aa17.03■□□□□ 0.32
COL18A1-201ENST00000342220 NLRP6P59044 892 aa17.03■□□□□ 0.32
COL18A1-201ENST00000342220 ALKQ9UM73 1620 aa17.02■□□□□ 0.32
COL18A1-201ENST00000342220 TCP11L2Q8N4U5 519 aa17.02■□□□□ 0.32
COL18A1-201ENST00000342220 FRAT1Q92837 279 aaPredicted RBP17.02■□□□□ 0.32
COL18A1-201ENST00000342220 RCAN3Q9UKA8 241 aa17.02■□□□□ 0.32
COL18A1-201ENST00000342220 ASXL1Q8IXJ9 1541 aa17.02■□□□□ 0.32
COL18A1-201ENST00000342220 TMEM131LA2VDJ0 1609 aa17.02■□□□□ 0.32
COL18A1-201ENST00000342220 RTL5Q5HYW3 569 aaPredicted RBP17.02■□□□□ 0.32
COL18A1-201ENST00000342220 PRR36Q9H6K5 1346 aa17.02■□□□□ 0.31
COL18A1-201ENST00000342220 SPATA31D1Q6ZQQ2 1576 aa17.02■□□□□ 0.31
COL18A1-201ENST00000342220 ADGRB1O14514 1584 aa17.01■□□□□ 0.31
COL18A1-201ENST00000342220 PPIP5K1Q6PFW1 1433 aa17.01■□□□□ 0.31
COL18A1-201ENST00000342220 ANKRD36BQ8N2N9 1353 aa17.01■□□□□ 0.31
COL18A1-201ENST00000342220 DIAPH1O60610 1272 aaKnown RBP17■□□□□ 0.31
COL18A1-201ENST00000342220 PSME1Q06323 249 aa17■□□□□ 0.31
COL18A1-201ENST00000342220 GOLGA2Q08379 1002 aa17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms