RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 MAP3K4Q9Y6R4 1608 aa28.72■■■□□ 2.19
TRIM28-202ENST00000341753 POGZQ7Z3K3 1410 aa28.72■■■□□ 2.19
TRIM28-202ENST00000341753 NPATQ14207 1427 aa28.71■■■□□ 2.19
TRIM28-202ENST00000341753 CARD14Q9BXL6 1004 aa28.71■■■□□ 2.19
TRIM28-202ENST00000341753 TNNT2P45379 298 aaPredicted RBP28.7■■■□□ 2.19
TRIM28-202ENST00000341753 PDE3AQ14432 1141 aa28.7■■■□□ 2.19
TRIM28-202ENST00000341753 KIF1BO60333 1816 aa28.7■■■□□ 2.18
TRIM28-202ENST00000341753 FRMPD1Q5SYB0 1578 aa28.7■■■□□ 2.18
TRIM28-202ENST00000341753 BECN1Q14457 450 aa28.7■■■□□ 2.18
TRIM28-202ENST00000341753 BCL2L13Q9BXK5 485 aa28.7■■■□□ 2.18
TRIM28-202ENST00000341753 WWC1Q8IX03 1113 aa28.69■■■□□ 2.18
TRIM28-202ENST00000341753 MAPK8IP3Q9UPT6 1336 aa28.68■■■□□ 2.18
TRIM28-202ENST00000341753 MYOM1P52179 1685 aa28.68■■■□□ 2.18
TRIM28-202ENST00000341753 ERVK-7P63135 1459 aa28.68■■■□□ 2.18
TRIM28-202ENST00000341753 SPRYD3Q8NCJ5 442 aa28.68■■■□□ 2.18
TRIM28-202ENST00000341753 FAM43AQ8N2R8 423 aa28.67■■■□□ 2.18
TRIM28-202ENST00000341753 MYOM2P54296 1465 aa28.66■■■□□ 2.18
TRIM28-202ENST00000341753 PCDHB15Q9Y5E8 787 aa28.65■■■□□ 2.18
TRIM28-202ENST00000341753 RLBP1P12271 317 aa28.64■■■□□ 2.18
TRIM28-202ENST00000341753 NPC1L1Q9UHC9 1359 aa28.64■■■□□ 2.18
TRIM28-202ENST00000341753 NLRP1Q9C000 1473 aa28.63■■■□□ 2.17
TRIM28-202ENST00000341753 VIRMAQ69YN4 1812 aaKnown RBP28.61■■■□□ 2.17
TRIM28-202ENST00000341753 KDM5AP29375 1690 aaKnown RBP28.6■■■□□ 2.17
TRIM28-202ENST00000341753 KIAA1210Q9ULL0 1709 aa28.6■■■□□ 2.17
TRIM28-202ENST00000341753 MLH3Q9UHC1 1453 aa28.6■■■□□ 2.17
TRIM28-202ENST00000341753 LMTK2Q8IWU2 1503 aa28.6■■■□□ 2.17
TRIM28-202ENST00000341753 ANTXR1Q9H6X2 564 aa28.59■■■□□ 2.17
TRIM28-202ENST00000341753 PDZRN3Q9UPQ7 1066 aa28.59■■■□□ 2.17
TRIM28-202ENST00000341753 HECW2Q9P2P5 1572 aa28.59■■■□□ 2.17
TRIM28-202ENST00000341753 RARSP54136 660 aaKnown RBP28.59■■■□□ 2.17
TRIM28-202ENST00000341753 IFT172Q9UG01 1749 aa28.59■■■□□ 2.17
TRIM28-202ENST00000341753 ADGRB3O60242 1522 aa28.58■■■□□ 2.17
TRIM28-202ENST00000341753 TBC1D2Q9BYX2 928 aa28.58■■■□□ 2.17
TRIM28-202ENST00000341753 SLC12A5Q9H2X9 1139 aa28.57■■■□□ 2.16
TRIM28-202ENST00000341753 UPF2Q9HAU5 1272 aaKnown RBP28.57■■■□□ 2.16
TRIM28-202ENST00000341753 RRAGDQ9NQL2 400 aaPredicted RBP28.56■■■□□ 2.16
TRIM28-202ENST00000341753 CYB5RLQ6IPT4 315 aa28.55■■■□□ 2.16
TRIM28-202ENST00000341753 TBC1D32Q96NH3 1257 aa28.55■■■□□ 2.16
TRIM28-202ENST00000341753 NRXN1Q9ULB1 1477 aa28.55■■■□□ 2.16
TRIM28-202ENST00000341753 SAFB2Q14151 953 aaKnown RBP eCLIP28.55■■■□□ 2.16
TRIM28-202ENST00000341753 NEURL4Q96JN8 1562 aa28.54■■■□□ 2.16
TRIM28-202ENST00000341753 C14orf93Q9H972 538 aaKnown RBP28.54■■■□□ 2.16
TRIM28-202ENST00000341753 ABCC3O15438 1527 aa28.54■■■□□ 2.16
TRIM28-202ENST00000341753 PMFBP1Q8TBY8 1022 aa28.54■■■□□ 2.16
TRIM28-202ENST00000341753 GZF1Q9H116 711 aaPredicted RBP28.54■■■□□ 2.16
TRIM28-202ENST00000341753 TCP11L2Q8N4U5 519 aa28.53■■■□□ 2.16
TRIM28-202ENST00000341753 NINLQ9Y2I6 1382 aa28.52■■■□□ 2.16
TRIM28-202ENST00000341753 MORC1Q86VD1 984 aa28.51■■■□□ 2.15
TRIM28-202ENST00000341753 RSPH6AQ9H0K4 717 aa28.51■■■□□ 2.15
TRIM28-202ENST00000341753 CFAP74Q9C0B2 1584 aa28.5■■■□□ 2.15
TRIM28-202ENST00000341753 YEATS2Q9ULM3 1422 aa28.5■■■□□ 2.15
TRIM28-202ENST00000341753 SIGLEC1Q9BZZ2 1709 aa28.49■■■□□ 2.15
TRIM28-202ENST00000341753 NGEFQ8N5V2 710 aa28.49■■■□□ 2.15
TRIM28-202ENST00000341753 RUNDC1Q96C34 613 aa28.48■■■□□ 2.15
TRIM28-202ENST00000341753 POLR3AO14802 1390 aaPredicted RBP28.47■■■□□ 2.15
TRIM28-202ENST00000341753 IDI1Q13907 227 aa28.47■■■□□ 2.15
TRIM28-202ENST00000341753 L1TD1Q5T7N2 865 aaKnown RBP28.47■■■□□ 2.15
TRIM28-202ENST00000341753 NSD3Q9BZ95 1437 aa28.46■■■□□ 2.15
TRIM28-202ENST00000341753 STK26Q9P289 416 aa28.46■■■□□ 2.15
TRIM28-202ENST00000341753 PPLO60437 1756 aa28.45■■■□□ 2.15
TRIM28-202ENST00000341753 UBE2Q2Q8WVN8 375 aa28.45■■■□□ 2.14
TRIM28-202ENST00000341753 RWDD1Q9H446 243 aaPredicted RBP28.44■■■□□ 2.14
TRIM28-202ENST00000341753 ADGRB1O14514 1584 aa28.43■■■□□ 2.14
TRIM28-202ENST00000341753 MFAP1P55081 439 aaKnown RBP28.43■■■□□ 2.14
TRIM28-202ENST00000341753 PANK2Q9BZ23 570 aa28.43■■■□□ 2.14
TRIM28-202ENST00000341753 XRCC6P12956 609 aaKnown RBP eCLIP28.42■■■□□ 2.143e-9■□□□□ 11
TRIM28-202ENST00000341753 DIP2CQ9Y2E4 1556 aa28.42■■■□□ 2.14
TRIM28-202ENST00000341753 CAMSAP1Q5T5Y3 1602 aa28.42■■■□□ 2.14
TRIM28-202ENST00000341753 NEO1Q92859 1461 aa28.41■■■□□ 2.14
TRIM28-202ENST00000341753 MTHFSP49914 203 aa28.4■■■□□ 2.14
TRIM28-202ENST00000341753 CABP2Q9NPB3 220 aa28.4■■■□□ 2.14
TRIM28-202ENST00000341753 SLC24A1O60721 1099 aa28.39■■■□□ 2.14
TRIM28-202ENST00000341753 MCM4P33991 863 aa28.39■■■□□ 2.14
TRIM28-202ENST00000341753 SBNO2Q9Y2G9 1366 aa28.39■■■□□ 2.13
TRIM28-202ENST00000341753 GOLGA6L3A6NEY3 463 aa28.39■■■□□ 2.13
TRIM28-202ENST00000341753 FBXO31Q5XUX0 539 aaPredicted RBP28.39■■■□□ 2.13
TRIM28-202ENST00000341753 QRICH2Q9H0J4 1663 aa28.39■■■□□ 2.13
TRIM28-202ENST00000341753 MYO3AQ8NEV4 1616 aa28.38■■■□□ 2.13
TRIM28-202ENST00000341753 SETBP1Q9Y6X0 1596 aa28.38■■■□□ 2.13
TRIM28-202ENST00000341753 RPGRIP1LQ68CZ1 1315 aa28.36■■■□□ 2.13
TRIM28-202ENST00000341753 MVPQ14764 893 aaKnown RBP28.36■■■□□ 2.13
TRIM28-202ENST00000341753 FTSJ3Q8IY81 847 aaKnown RBP28.36■■■□□ 2.13
TRIM28-202ENST00000341753 C22orf23Q9BZE7 217 aa28.36■■■□□ 2.13
TRIM28-202ENST00000341753 TSR2Q969E8 191 aaKnown RBP28.36■■■□□ 2.13
TRIM28-202ENST00000341753 VGFO15240 615 aaPredicted RBP28.35■■■□□ 2.13
TRIM28-202ENST00000341753 WDR63Q8IWG1 891 aa28.35■■■□□ 2.13
TRIM28-202ENST00000341753 SHPRHQ149N8 1683 aa28.35■■■□□ 2.13
TRIM28-202ENST00000341753 PHF23Q9BUL5 403 aaPredicted RBP28.35■■■□□ 2.13
TRIM28-202ENST00000341753 IQSEC2Q5JU85 1478 aa28.34■■■□□ 2.13
TRIM28-202ENST00000341753 FAM69CQ0P6D2 419 aa28.33■■■□□ 2.13
TRIM28-202ENST00000341753 U2AF1L5P0DN76 240 aaPredicted RBP28.32■■■□□ 2.12
TRIM28-202ENST00000341753 U2AF1Q01081 240 aaKnown RBP eCLIP28.32■■■□□ 2.126e-7■□□□□ 9.2
TRIM28-202ENST00000341753 NEXMIFQ5QGS0 1516 aa28.31■■■□□ 2.12
TRIM28-202ENST00000341753 GLI2P10070 1586 aa28.31■■■□□ 2.12
TRIM28-202ENST00000341753 AAMPQ13685 434 aa28.31■■■□□ 2.12
TRIM28-202ENST00000341753 RICTORQ6R327 1708 aa28.31■■■□□ 2.12
TRIM28-202ENST00000341753 ZKSCAN2Q63HK3 967 aa28.31■■■□□ 2.12
TRIM28-202ENST00000341753 DZIP1LQ8IYY4 767 aaKnown RBP28.31■■■□□ 2.12
TRIM28-202ENST00000341753 TRAK2O60296 914 aa28.3■■■□□ 2.12
TRIM28-202ENST00000341753 FSD2A1L4K1 749 aa28.3■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms