RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 NEXNQ0ZGT2 675 aa12.84□□□□□ -0.35
USP54-201ENST00000339859 GORABQ5T7V8 394 aa12.84□□□□□ -0.35
USP54-201ENST00000339859 MAGI2Q86UL8 1455 aa12.84□□□□□ -0.35
USP54-201ENST00000339859 NCKAP5LQ9HCH0 1330 aa12.84□□□□□ -0.35
USP54-201ENST00000339859 DDX58O95786 925 aaKnown RBP12.84□□□□□ -0.35
USP54-201ENST00000339859 SLC4A10Q6U841 1118 aa12.84□□□□□ -0.35
USP54-201ENST00000339859 PRKRIP1Q9H875 184 aaPredicted RBP12.84□□□□□ -0.35
USP54-201ENST00000339859 WASLO00401 505 aaPredicted RBP12.84□□□□□ -0.35
USP54-201ENST00000339859 XPCQ01831 940 aaPredicted RBP12.84□□□□□ -0.35
USP54-201ENST00000339859 ADGBQ8N7X0 1667 aa12.84□□□□□ -0.35
USP54-201ENST00000339859 RCAN3Q9UKA8 241 aa12.84□□□□□ -0.35
USP54-201ENST00000339859 ARHGEF5Q12774 1597 aa12.84□□□□□ -0.35
USP54-201ENST00000339859 E9PSI1 815 aa12.83□□□□□ -0.35
USP54-201ENST00000339859 NBPF8Q3BBV2 869 aa12.83□□□□□ -0.36
USP54-201ENST00000339859 SCAF11Q99590 1463 aaKnown RBP12.83□□□□□ -0.36
USP54-201ENST00000339859 KCNJ4P48050 445 aa12.83□□□□□ -0.36
USP54-201ENST00000339859 SLC12A5Q9H2X9 1139 aa12.83□□□□□ -0.36
USP54-201ENST00000339859 HMOX1P09601 288 aa12.82□□□□□ -0.36
USP54-201ENST00000339859 CLASP1Q7Z460 1538 aa12.82□□□□□ -0.36
USP54-201ENST00000339859 HSP90AB1P08238 724 aaKnown RBP12.82□□□□□ -0.36
USP54-201ENST00000339859 TSPYL4Q9UJ04 414 aa12.81□□□□□ -0.36
USP54-201ENST00000339859 EIF2S2P20042 333 aaKnown RBP12.81□□□□□ -0.36
USP54-201ENST00000339859 GNAI1P63096 354 aa12.81□□□□□ -0.36
USP54-201ENST00000339859 KDM6BO15054 1643 aa12.81□□□□□ -0.36
USP54-201ENST00000339859 NINLQ9Y2I6 1382 aa12.81□□□□□ -0.36
USP54-201ENST00000339859 BECN1Q14457 450 aa12.81□□□□□ -0.36
USP54-201ENST00000339859 KRT28Q7Z3Y7 464 aa12.8□□□□□ -0.36
USP54-201ENST00000339859 PPP4R2Q9NY27 417 aa12.8□□□□□ -0.36
USP54-201ENST00000339859 ADGRL2O95490 1459 aa12.8□□□□□ -0.36
USP54-201ENST00000339859 HSPA2P54652 639 aa12.8□□□□□ -0.36
USP54-201ENST00000339859 RWDD1Q9H446 243 aaPredicted RBP12.8□□□□□ -0.36
USP54-201ENST00000339859 EIF2AK4Q9P2K8 1649 aaKnown RBP12.8□□□□□ -0.36
USP54-201ENST00000339859 MTHFSP49914 203 aa12.8□□□□□ -0.36
USP54-201ENST00000339859 RIMBP3CA6NJZ7 1639 aa12.8□□□□□ -0.36
USP54-201ENST00000339859 RIMBP3BA6NNM3 1639 aa12.8□□□□□ -0.36
USP54-201ENST00000339859 RIMBP3Q9UFD9 1639 aa12.8□□□□□ -0.36
USP54-201ENST00000339859 LMTK3Q96Q04 1460 aa12.79□□□□□ -0.36
USP54-201ENST00000339859 RPRD2Q5VT52 1461 aaKnown RBP12.79□□□□□ -0.36
USP54-201ENST00000339859 HECW2Q9P2P5 1572 aa12.79□□□□□ -0.36
USP54-201ENST00000339859 PREX2Q70Z35 1606 aa12.78□□□□□ -0.36
USP54-201ENST00000339859 ERCC6L2Q5T890 1561 aa12.78□□□□□ -0.36
USP54-201ENST00000339859 MCCP23508 829 aa12.78□□□□□ -0.36
USP54-201ENST00000339859 FGD1P98174 961 aa12.78□□□□□ -0.36
USP54-201ENST00000339859 CABP4P57796 275 aa12.78□□□□□ -0.36
USP54-201ENST00000339859 TTC37Q6PGP7 1564 aa12.77□□□□□ -0.36
USP54-201ENST00000339859 NGLY1Q96IV0 654 aa12.77□□□□□ -0.36
USP54-201ENST00000339859 NSD3Q9BZ95 1437 aa12.77□□□□□ -0.36
USP54-201ENST00000339859 PNISRQ8TF01 805 aaKnown RBP12.77□□□□□ -0.37
USP54-201ENST00000339859 BRD4O60885 1362 aaPredicted RBP12.77□□□□□ -0.37
USP54-201ENST00000339859 DDRGK1Q96HY6 314 aa12.77□□□□□ -0.37
USP54-201ENST00000339859 ADAMTS2O95450 1211 aa12.76□□□□□ -0.37
USP54-201ENST00000339859 ZC3H6P61129 1189 aaKnown RBP12.76□□□□□ -0.37
USP54-201ENST00000339859 PTPRKQ15262 1439 aa12.76□□□□□ -0.37
USP54-201ENST00000339859 KLHL34Q8N239 644 aa12.76□□□□□ -0.37
USP54-201ENST00000339859 NPHP3Q7Z494 1330 aa12.76□□□□□ -0.37
USP54-201ENST00000339859 APAF1O14727 1248 aa12.76□□□□□ -0.37
USP54-201ENST00000339859 FRAT2O75474 233 aaPredicted RBP12.76□□□□□ -0.37
USP54-201ENST00000339859 RBM42Q9BTD8 480 aaKnown RBP12.76□□□□□ -0.37
USP54-201ENST00000339859 MAGI3Q5TCQ9 1506 aa12.76□□□□□ -0.37
USP54-201ENST00000339859 PPP2R1AP30153 589 aa12.76□□□□□ -0.37
USP54-201ENST00000339859 KIF6Q6ZMV9 814 aa12.76□□□□□ -0.37
USP54-201ENST00000339859 DDX54Q8TDD1 881 aaKnown RBP12.76□□□□□ -0.37
USP54-201ENST00000339859 ABCC1P33527 1531 aa12.75□□□□□ -0.37
USP54-201ENST00000339859 HSP90B1P14625 803 aaKnown RBP12.75□□□□□ -0.37
USP54-201ENST00000339859 FOXO3O43524 673 aa12.75□□□□□ -0.37
USP54-201ENST00000339859 RBM33Q96EV2 1170 aaKnown RBP12.75□□□□□ -0.37
USP54-201ENST00000339859 APBB1O00213 710 aa12.75□□□□□ -0.37
USP54-201ENST00000339859 KDM5DQ9BY66 1539 aa12.75□□□□□ -0.37
USP54-201ENST00000339859 SAMD9LQ8IVG5 1584 aa12.75□□□□□ -0.37
USP54-201ENST00000339859 RGS3P49796 1198 aa12.75□□□□□ -0.37
USP54-201ENST00000339859 ELL2O00472 640 aaPredicted RBP12.74□□□□□ -0.37
USP54-201ENST00000339859 YEATS2Q9ULM3 1422 aa12.74□□□□□ -0.37
USP54-201ENST00000339859 C19orf44Q9H6X5 657 aa12.74□□□□□ -0.37
USP54-201ENST00000339859 C9orf78Q9NZ63 289 aaPredicted RBP12.74□□□□□ -0.37
USP54-201ENST00000339859 ZNF530Q6P9A1 599 aaPredicted RBP12.73□□□□□ -0.37
USP54-201ENST00000339859 MLH3Q9UHC1 1453 aa12.73□□□□□ -0.37
USP54-201ENST00000339859 KIAA1211Q6ZU35 1233 aa12.73□□□□□ -0.37
USP54-201ENST00000339859 API5Q9BZZ5 524 aaKnown RBP12.73□□□□□ -0.37
USP54-201ENST00000339859 PRKAR2BP31323 418 aa12.73□□□□□ -0.37
USP54-201ENST00000339859 TBX22Q9Y458 520 aa12.73□□□□□ -0.37
USP54-201ENST00000339859 ZKSCAN2Q63HK3 967 aa12.72□□□□□ -0.37
USP54-201ENST00000339859 SULT6B1Q6IMI4 303 aa12.72□□□□□ -0.37
USP54-201ENST00000339859 RIC3Q7Z5B4 369 aa12.72□□□□□ -0.37
USP54-201ENST00000339859 ISY1Q9ULR0 285 aaKnown RBP12.72□□□□□ -0.37
USP54-201ENST00000339859 NCLP19338 710 aaKnown RBP12.72□□□□□ -0.37
USP54-201ENST00000339859 ANP32BQ92688 251 aaKnown RBP12.72□□□□□ -0.37
USP54-201ENST00000339859 RRS1Q15050 365 aaKnown RBP12.71□□□□□ -0.37
USP54-201ENST00000339859 NSD2O96028 1365 aa12.71□□□□□ -0.38
USP54-201ENST00000339859 NECTIN2Q92692 538 aa12.71□□□□□ -0.38
USP54-201ENST00000339859 NAP1L2Q9ULW6 460 aaPredicted RBP12.71□□□□□ -0.38
USP54-201ENST00000339859 TTC21AQ8NDW8 1320 aa12.71□□□□□ -0.38
USP54-201ENST00000339859 ARAP3Q8WWN8 1544 aa12.7□□□□□ -0.38
USP54-201ENST00000339859 CCDC30Q5VVM6 783 aa12.7□□□□□ -0.38
USP54-201ENST00000339859 TRPM2O94759 1503 aa12.7□□□□□ -0.38
USP54-201ENST00000339859 KCNA6P17658 529 aa12.69□□□□□ -0.38
USP54-201ENST00000339859 ADCY10Q96PN6 1610 aa12.69□□□□□ -0.38
USP54-201ENST00000339859 FKBP5Q13451 457 aaPredicted RBP12.69□□□□□ -0.38
USP54-201ENST00000339859 ACEP12821 1306 aa12.69□□□□□ -0.38
USP54-201ENST00000339859 NOL10Q9BSC4 688 aaKnown RBP12.68□□□□□ -0.38
USP54-201ENST00000339859 CLUAP1Q96AJ1 413 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms