RNA–Protein interactions for RNA: ENST00000339162.11

PDLIM2-203, Transcript of PDZ and LIM domain 2, humanhuman

TSL 1 (best) BASIC

Gene PDLIM2, Length 2,226 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-203ENST00000339162 NLRP1Q9C000 1473 aa30.21■■■□□ 2.43
PDLIM2-203ENST00000339162 NPC1L1Q9UHC9 1359 aa30.2■■■□□ 2.43
PDLIM2-203ENST00000339162 LTKP29376 864 aa30.2■■■□□ 2.42
PDLIM2-203ENST00000339162 NSD3Q9BZ95 1437 aa30.2■■■□□ 2.42
PDLIM2-203ENST00000339162 PLEKHH1Q9ULM0 1364 aa30.19■■■□□ 2.42
PDLIM2-203ENST00000339162 SUPT16HQ9Y5B9 1047 aaKnown RBP30.18■■■□□ 2.42
PDLIM2-203ENST00000339162 PUS7Q96PZ0 661 aaKnown RBP30.18■■■□□ 2.42
PDLIM2-203ENST00000339162 TXNDC2Q86VQ3 553 aa30.15■■■□□ 2.42
PDLIM2-203ENST00000339162 ABCC11Q96J66 1382 aa30.14■■■□□ 2.42
PDLIM2-203ENST00000339162 CDK19Q9BWU1 502 aa30.14■■■□□ 2.41
PDLIM2-203ENST00000339162 FKBP8Q14318 412 aa30.12■■■□□ 2.41
PDLIM2-203ENST00000339162 DLC1Q96QB1 1528 aa30.1■■■□□ 2.41
PDLIM2-203ENST00000339162 SALL2Q9Y467 1007 aaPredicted RBP30.1■■■□□ 2.41
PDLIM2-203ENST00000339162 ANKRD36BQ8N2N9 1353 aa30.1■■■□□ 2.41
PDLIM2-203ENST00000339162 TNNT2P45379 298 aaPredicted RBP30.08■■■□□ 2.41
PDLIM2-203ENST00000339162 SLC26A8Q96RN1 970 aa30.08■■■□□ 2.41
PDLIM2-203ENST00000339162 EID1Q9Y6B2 187 aa30.08■■■□□ 2.41
PDLIM2-203ENST00000339162 ADAMTS13Q76LX8 1427 aa30.08■■■□□ 2.41
PDLIM2-203ENST00000339162 ADAMTS8Q9UP79 889 aa30.06■■■□□ 2.4
PDLIM2-203ENST00000339162 ATAD2Q6PL18 1390 aa30.06■■■□□ 2.4
PDLIM2-203ENST00000339162 MORC1Q86VD1 984 aa30.06■■■□□ 2.4
PDLIM2-203ENST00000339162 A0A1W2PP64 1363 aa30.05■■■□□ 2.4
PDLIM2-203ENST00000339162 PLEKHG1Q9ULL1 1385 aa30.05■■■□□ 2.4
PDLIM2-203ENST00000339162 CGNL1Q0VF96 1302 aa30.04■■■□□ 2.4
PDLIM2-203ENST00000339162 RIMS1Q86UR5 1692 aaKnown RBP30.04■■■□□ 2.4
PDLIM2-203ENST00000339162 NEFLP07196 543 aa30.03■■■□□ 2.4
PDLIM2-203ENST00000339162 THEMISQ8N1K5 641 aaPredicted RBP30.03■■■□□ 2.4
PDLIM2-203ENST00000339162 CABP1Q9NZU7 370 aa30.02■■■□□ 2.4
PDLIM2-203ENST00000339162 WDR43Q15061 677 aaKnown RBP eCLIP30.01■■■□□ 2.39
PDLIM2-203ENST00000339162 NINLQ9Y2I6 1382 aa30■■■□□ 2.39
PDLIM2-203ENST00000339162 ARHGAP23Q9P227 1491 aa29.99■■■□□ 2.39
PDLIM2-203ENST00000339162 SLIT1O75093 1534 aa29.99■■■□□ 2.39
PDLIM2-203ENST00000339162 TERF2IPQ9NYB0 399 aa29.98■■■□□ 2.39
PDLIM2-203ENST00000339162 ROBO2Q9HCK4 1378 aa29.97■■■□□ 2.39
PDLIM2-203ENST00000339162 TECPR2O15040 1411 aa29.97■■■□□ 2.39
PDLIM2-203ENST00000339162 BLMP54132 1417 aaPredicted RBP29.97■■■□□ 2.39
PDLIM2-203ENST00000339162 CD163L1Q9NR16 1453 aa29.97■■■□□ 2.39
PDLIM2-203ENST00000339162 WASLO00401 505 aaPredicted RBP29.96■■■□□ 2.39
PDLIM2-203ENST00000339162 USP32Q8NFA0 1604 aa29.95■■■□□ 2.39
PDLIM2-203ENST00000339162 IRX6P78412 446 aaPredicted RBP29.95■■■□□ 2.39
PDLIM2-203ENST00000339162 FAM135BQ49AJ0 1406 aa29.95■■■□□ 2.38
PDLIM2-203ENST00000339162 SIRT1Q96EB6 747 aa29.94■■■□□ 2.38
PDLIM2-203ENST00000339162 SMG6Q86US8 1419 aaKnown RBP29.93■■■□□ 2.38
PDLIM2-203ENST00000339162 KNDC1Q76NI1 1749 aa29.93■■■□□ 2.38
PDLIM2-203ENST00000339162 GGNBP2Q9H3C7 697 aa29.93■■■□□ 2.38
PDLIM2-203ENST00000339162 NUDCQ9Y266 331 aa29.93■■■□□ 2.38
PDLIM2-203ENST00000339162 CPS1P31327 1500 aa29.93■■■□□ 2.38
PDLIM2-203ENST00000339162 MED14O60244 1454 aa29.93■■■□□ 2.38
PDLIM2-203ENST00000339162 HDGFL2Q7Z4V5 671 aaPredicted RBP29.92■■■□□ 2.38
PDLIM2-203ENST00000339162 PTPRUQ92729 1446 aa29.92■■■□□ 2.38
PDLIM2-203ENST00000339162 NCKAP5LQ9HCH0 1330 aa29.91■■■□□ 2.38
PDLIM2-203ENST00000339162 CEP170BQ9Y4F5 1589 aaPredicted RBP29.9■■■□□ 2.38
PDLIM2-203ENST00000339162 INSRP06213 1382 aa29.9■■■□□ 2.38
PDLIM2-203ENST00000339162 ADAMTSL3P82987 1691 aa29.89■■■□□ 2.38
PDLIM2-203ENST00000339162 CCDC146Q8IYE0 955 aa29.88■■■□□ 2.37
PDLIM2-203ENST00000339162 AMOTL2Q9Y2J4 779 aa29.88■■■□□ 2.37
PDLIM2-203ENST00000339162 NSD2O96028 1365 aa29.87■■■□□ 2.37
PDLIM2-203ENST00000339162 FYB1O15117 783 aa29.87■■■□□ 2.37
PDLIM2-203ENST00000339162 MTHFSP49914 203 aa29.87■■■□□ 2.37
PDLIM2-203ENST00000339162 TBX22Q9Y458 520 aa29.87■■■□□ 2.37
PDLIM2-203ENST00000339162 NUDT16Q96DE0 195 aaKnown RBP29.87■■■□□ 2.37
PDLIM2-203ENST00000339162 POLR3AO14802 1390 aaPredicted RBP29.85■■■□□ 2.37
PDLIM2-203ENST00000339162 PPIP5K1Q6PFW1 1433 aa29.85■■■□□ 2.37
PDLIM2-203ENST00000339162 SUGP2Q8IX01 1082 aaKnown RBP eCLIP29.84■■■□□ 2.37
PDLIM2-203ENST00000339162 CDCA7LQ96GN5 454 aa29.84■■■□□ 2.37
PDLIM2-203ENST00000339162 NUTM2FA1L443 756 aa29.83■■■□□ 2.37
PDLIM2-203ENST00000339162 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.81■■■□□ 2.36
PDLIM2-203ENST00000339162 PRR36Q9H6K5 1346 aa29.8■■■□□ 2.36
PDLIM2-203ENST00000339162 CCDC61Q9Y6R9 512 aa29.8■■■□□ 2.36
PDLIM2-203ENST00000339162 ATP7BP35670 1465 aa29.79■■■□□ 2.36
PDLIM2-203ENST00000339162 PDE3BQ13370 1112 aa29.76■■■□□ 2.35
PDLIM2-203ENST00000339162 ANKLE2Q86XL3 938 aa29.75■■■□□ 2.35
PDLIM2-203ENST00000339162 APAF1O14727 1248 aa29.75■■■□□ 2.35
PDLIM2-203ENST00000339162 CPSF1Q10570 1443 aaKnown RBP29.74■■■□□ 2.35
PDLIM2-203ENST00000339162 CFAP53Q96M91 514 aa29.73■■■□□ 2.35
PDLIM2-203ENST00000339162 SHPRHQ149N8 1683 aa29.72■■■□□ 2.35
PDLIM2-203ENST00000339162 KCNA6P17658 529 aa29.72■■■□□ 2.35
PDLIM2-203ENST00000339162 FBLN1P23142 703 aa29.72■■■□□ 2.35
PDLIM2-203ENST00000339162 DIP2AQ14689 1571 aa29.71■■■□□ 2.35
PDLIM2-203ENST00000339162 NME9Q86XW9 330 aa29.69■■■□□ 2.34
PDLIM2-203ENST00000339162 PTCH1Q13635 1447 aa29.69■■■□□ 2.34
PDLIM2-203ENST00000339162 ADGRB2O60241 1585 aa29.69■■■□□ 2.34
PDLIM2-203ENST00000339162 ZNF142P52746 1687 aaPredicted RBP29.69■■■□□ 2.34
PDLIM2-203ENST00000339162 ZRANB1Q9UGI0 708 aa29.68■■■□□ 2.34
PDLIM2-203ENST00000339162 SETD1BQ9UPS6 1966 aaKnown RBP29.68■■■□□ 2.34
PDLIM2-203ENST00000339162 ANKRD26Q9UPS8 1709 aa29.68■■■□□ 2.34
PDLIM2-203ENST00000339162 KIF20BQ96Q89 1820 aa29.68■■■□□ 2.34
PDLIM2-203ENST00000339162 CDC42BPGQ6DT37 1551 aa29.67■■■□□ 2.34
PDLIM2-203ENST00000339162 EDC4Q6P2E9 1401 aaKnown RBP29.67■■■□□ 2.34
PDLIM2-203ENST00000339162 ZNF521Q96K83 1311 aa29.64■■■□□ 2.34
PDLIM2-203ENST00000339162 XRN1Q8IZH2 1706 aaKnown RBP29.63■■■□□ 2.33
PDLIM2-203ENST00000339162 ACEP12821 1306 aa29.63■■■□□ 2.33
PDLIM2-203ENST00000339162 U2AF1L5P0DN76 240 aaPredicted RBP29.63■■■□□ 2.33
PDLIM2-203ENST00000339162 U2AF1Q01081 240 aaKnown RBP eCLIP29.63■■■□□ 2.33
PDLIM2-203ENST00000339162 RNF123Q5XPI4 1314 aa29.62■■■□□ 2.33
PDLIM2-203ENST00000339162 PPM1GO15355 546 aaPredicted RBP29.61■■■□□ 2.33
PDLIM2-203ENST00000339162 RBM33Q96EV2 1170 aaKnown RBP29.61■■■□□ 2.33
PDLIM2-203ENST00000339162 RCAN3Q9UKA8 241 aa29.61■■■□□ 2.33
PDLIM2-203ENST00000339162 ZNF692Q9BU19 519 aaPredicted RBP29.61■■■□□ 2.33
PDLIM2-203ENST00000339162 GOLGA2Q08379 1002 aa29.6■■■□□ 2.33
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms