RNA–Protein interactions for RNA: ENST00000337620.8

CBX3-201, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 2,128 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-201ENST00000337620 CCER2I3L3R5 266 aa20.12■□□□□ 0.81
CBX3-201ENST00000337620 PTPRUQ92729 1446 aa20.12■□□□□ 0.81
CBX3-201ENST00000337620 KNDC1Q76NI1 1749 aa20.12■□□□□ 0.81
CBX3-201ENST00000337620 FAM135BQ49AJ0 1406 aa20.12■□□□□ 0.81
CBX3-201ENST00000337620 MYOM1P52179 1685 aa20.11■□□□□ 0.81
CBX3-201ENST00000337620 PUS7Q96PZ0 661 aaKnown RBP20.11■□□□□ 0.81
CBX3-201ENST00000337620 NCKAP5LQ9HCH0 1330 aa20.11■□□□□ 0.81
CBX3-201ENST00000337620 ROBO2Q9HCK4 1378 aa20.11■□□□□ 0.81
CBX3-201ENST00000337620 CPS1P31327 1500 aa20.11■□□□□ 0.81
CBX3-201ENST00000337620 YTHDC1Q96MU7 727 aaKnown RBP20.1■□□□□ 0.81
CBX3-201ENST00000337620 CDK19Q9BWU1 502 aa20.1■□□□□ 0.81
CBX3-201ENST00000337620 SLC12A5Q9H2X9 1139 aa20.09■□□□□ 0.81
CBX3-201ENST00000337620 KNSTRNQ9Y448 316 aa20.08■□□□□ 0.81
CBX3-201ENST00000337620 NPHP4O75161 1426 aaPredicted RBP20.08■□□□□ 0.8
CBX3-201ENST00000337620 PIK3R4Q99570 1358 aa20.06■□□□□ 0.8
CBX3-201ENST00000337620 CC2D1BQ5T0F9 858 aaKnown RBP20.05■□□□□ 0.8
CBX3-201ENST00000337620 KTN1Q86UP2 1357 aaKnown RBP20.05■□□□□ 0.8
CBX3-201ENST00000337620 WASLO00401 505 aaPredicted RBP20.04■□□□□ 0.8
CBX3-201ENST00000337620 HSPA2P54652 639 aa20.04■□□□□ 0.8
CBX3-201ENST00000337620 ATAD2Q6PL18 1390 aa20.03■□□□□ 0.8
CBX3-201ENST00000337620 KCNA6P17658 529 aa20.03■□□□□ 0.8
CBX3-201ENST00000337620 RALBP1Q15311 655 aa20.03■□□□□ 0.8
CBX3-201ENST00000337620 CARD14Q9BXL6 1004 aa20.02■□□□□ 0.8
CBX3-201ENST00000337620 PTCH1Q13635 1447 aa20.02■□□□□ 0.8
CBX3-201ENST00000337620 CCDC184Q52MB2 194 aa20■□□□□ 0.79
CBX3-201ENST00000337620 XRN1Q8IZH2 1706 aaKnown RBP20■□□□□ 0.79
CBX3-201ENST00000337620 AMER1Q5JTC6 1135 aaPredicted RBP20■□□□□ 0.79
CBX3-201ENST00000337620 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.99■□□□□ 0.79
CBX3-201ENST00000337620 NINLQ9Y2I6 1382 aa19.99■□□□□ 0.79
CBX3-201ENST00000337620 MRS2Q9HD23 443 aa19.99■□□□□ 0.79
CBX3-201ENST00000337620 CABP1Q9NZU7 370 aa19.99■□□□□ 0.79
CBX3-201ENST00000337620 PARD3Q8TEW0 1356 aa19.98■□□□□ 0.79
CBX3-201ENST00000337620 CHD2O14647 1828 aaKnown RBP19.98■□□□□ 0.79
CBX3-201ENST00000337620 ANKRD36BQ8N2N9 1353 aa19.97■□□□□ 0.79
CBX3-201ENST00000337620 NSD3Q9BZ95 1437 aa19.97■□□□□ 0.79
CBX3-201ENST00000337620 MYBBP1AQ9BQG0 1328 aaKnown RBP19.97■□□□□ 0.79
CBX3-201ENST00000337620 LMTK3Q96Q04 1460 aa19.96■□□□□ 0.79
CBX3-201ENST00000337620 NUDT16Q96DE0 195 aaKnown RBP19.96■□□□□ 0.79
CBX3-201ENST00000337620 TERF2IPQ9NYB0 399 aa19.96■□□□□ 0.79
CBX3-201ENST00000337620 NUTM2FA1L443 756 aa19.94■□□□□ 0.78
CBX3-201ENST00000337620 A0A1W2PP64 1363 aa19.93■□□□□ 0.78
CBX3-201ENST00000337620 ADGRB2O60241 1585 aa19.93■□□□□ 0.78
CBX3-201ENST00000337620 HDGFL2Q7Z4V5 671 aaPredicted RBP19.93■□□□□ 0.78
CBX3-201ENST00000337620 NPC1L1Q9UHC9 1359 aa19.93■□□□□ 0.78
CBX3-201ENST00000337620 RBM33Q96EV2 1170 aaKnown RBP19.93■□□□□ 0.78
CBX3-201ENST00000337620 CCDC61Q9Y6R9 512 aa19.93■□□□□ 0.78
CBX3-201ENST00000337620 PPIP5K1Q6PFW1 1433 aa19.92■□□□□ 0.78
CBX3-201ENST00000337620 PRR36Q9H6K5 1346 aa19.91■□□□□ 0.78
CBX3-201ENST00000337620 NLRP13Q86W25 1043 aa19.9■□□□□ 0.78
CBX3-201ENST00000337620 CGNL1Q0VF96 1302 aa19.9■□□□□ 0.78
CBX3-201ENST00000337620 CD163L1Q9NR16 1453 aa19.9■□□□□ 0.78
CBX3-201ENST00000337620 FAM9BQ8IZU0 186 aa19.89■□□□□ 0.77
CBX3-201ENST00000337620 ATP7BP35670 1465 aa19.88■□□□□ 0.77
CBX3-201ENST00000337620 BRD4O60885 1362 aaPredicted RBP19.88■□□□□ 0.77
CBX3-201ENST00000337620 C14orf37Q86TY3 774 aa19.87■□□□□ 0.77
CBX3-201ENST00000337620 MORC1Q86VD1 984 aa19.86■□□□□ 0.77
CBX3-201ENST00000337620 PROSER2Q86WR7 435 aaPredicted RBP19.86■□□□□ 0.77
CBX3-201ENST00000337620 CENPBP07199 599 aaPredicted RBP19.85■□□□□ 0.77
CBX3-201ENST00000337620 PPP2R1AP30153 589 aa19.85■□□□□ 0.77
CBX3-201ENST00000337620 USP32Q8NFA0 1604 aa19.85■□□□□ 0.77
CBX3-201ENST00000337620 NWD1Q149M9 1564 aa19.85■□□□□ 0.77
CBX3-201ENST00000337620 STRCQ7RTU9 1775 aa19.84■□□□□ 0.77
CBX3-201ENST00000337620 CPSF1Q10570 1443 aaKnown RBP19.83■□□□□ 0.76
CBX3-201ENST00000337620 TNNT2P45379 298 aaPredicted RBP19.82■□□□□ 0.76
CBX3-201ENST00000337620 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.82■□□□□ 0.76
CBX3-201ENST00000337620 NALCNQ8IZF0 1738 aa19.82■□□□□ 0.76
CBX3-201ENST00000337620 CDC42BPGQ6DT37 1551 aa19.81■□□□□ 0.76
CBX3-201ENST00000337620 NSD2O96028 1365 aa19.81■□□□□ 0.76
CBX3-201ENST00000337620 PLEKHG3A1L390 1219 aa19.81■□□□□ 0.76
CBX3-201ENST00000337620 PNISRQ8TF01 805 aaKnown RBP19.81■□□□□ 0.76
CBX3-201ENST00000337620 ZNF692Q9BU19 519 aaPredicted RBP19.81■□□□□ 0.76
CBX3-201ENST00000337620 GGNBP2Q9H3C7 697 aa19.81■□□□□ 0.76
CBX3-201ENST00000337620 ADGRL3Q9HAR2 1447 aa19.81■□□□□ 0.76
CBX3-201ENST00000337620 FYB1O15117 783 aa19.81■□□□□ 0.76
CBX3-201ENST00000337620 PMFBP1Q8TBY8 1022 aa19.81■□□□□ 0.76
CBX3-201ENST00000337620 ACEP12821 1306 aa19.8■□□□□ 0.76
CBX3-201ENST00000337620 TOPAZ1Q8N9V7 1692 aa19.8■□□□□ 0.76
CBX3-201ENST00000337620 NKTRP30414 1462 aaKnown RBP19.79■□□□□ 0.76
CBX3-201ENST00000337620 EDC4Q6P2E9 1401 aaKnown RBP19.78■□□□□ 0.76
CBX3-201ENST00000337620 ANKARQ7Z5J8 1434 aa19.78■□□□□ 0.76
CBX3-201ENST00000337620 RGPD8O14715 1765 aaPredicted RBP19.78■□□□□ 0.76
CBX3-201ENST00000337620 ITSN1Q15811 1721 aa19.78■□□□□ 0.76
CBX3-201ENST00000337620 FMN2Q9NZ56 1722 aa19.78■□□□□ 0.76
CBX3-201ENST00000337620 NGDNQ8NEJ9 315 aaKnown RBP19.77■□□□□ 0.76
CBX3-201ENST00000337620 STRCP1A6NGW2 1772 aa19.77■□□□□ 0.75
CBX3-201ENST00000337620 HNRNPUQ00839 825 aaKnown RBP eCLIP19.76■□□□□ 0.75
CBX3-201ENST00000337620 AKAP12Q02952 1782 aa19.76■□□□□ 0.75
CBX3-201ENST00000337620 TMEM94Q12767 1356 aa19.75■□□□□ 0.75
CBX3-201ENST00000337620 MON2Q7Z3U7 1717 aa19.74■□□□□ 0.75
CBX3-201ENST00000337620 C19orf44Q9H6X5 657 aa19.74■□□□□ 0.75
CBX3-201ENST00000337620 NME9Q86XW9 330 aa19.73■□□□□ 0.75
CBX3-201ENST00000337620 KIF20BQ96Q89 1820 aa19.73■□□□□ 0.75
CBX3-201ENST00000337620 USP6P35125 1406 aa19.72■□□□□ 0.75
CBX3-201ENST00000337620 ESCO1Q5FWF5 840 aa19.72■□□□□ 0.75
CBX3-201ENST00000337620 POLR3AO14802 1390 aaPredicted RBP19.71■□□□□ 0.75
CBX3-201ENST00000337620 TTC21BQ7Z4L5 1316 aa19.71■□□□□ 0.75
CBX3-201ENST00000337620 ZNF335Q9H4Z2 1342 aaPredicted RBP19.71■□□□□ 0.75
CBX3-201ENST00000337620 PHF8Q9UPP1 1060 aa19.71■□□□□ 0.75
CBX3-201ENST00000337620 DMRT2Q9Y5R5 561 aa19.71■□□□□ 0.75
CBX3-201ENST00000337620 ZRANB1Q9UGI0 708 aa19.7■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms