RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 TRIM34Q9BYJ4 488 aa12.46□□□□□ -0.42
CHD3-201ENST00000330494 GNAI1P63096 354 aa12.45□□□□□ -0.42
CHD3-201ENST00000330494 CDK13Q14004 1512 aaKnown RBP12.45□□□□□ -0.42
CHD3-201ENST00000330494 TPD52L1Q16890 204 aaPredicted RBP12.45□□□□□ -0.42
CHD3-201ENST00000330494 NOL10Q9BSC4 688 aaKnown RBP12.45□□□□□ -0.42
CHD3-201ENST00000330494 NUTM2BA6NNL0 878 aaPredicted RBP12.45□□□□□ -0.42
CHD3-201ENST00000330494 NUTM2EB1AL46 878 aaPredicted RBP12.45□□□□□ -0.42
CHD3-201ENST00000330494 DHX16O60231 1041 aaKnown RBP12.45□□□□□ -0.42
CHD3-201ENST00000330494 PRKAR2BP31323 418 aa12.45□□□□□ -0.42
CHD3-201ENST00000330494 NUTM2AQ8IVF1 878 aaPredicted RBP12.45□□□□□ -0.42
CHD3-201ENST00000330494 A0A0U1RQG5 324 aaPredicted RBP12.45□□□□□ -0.42
CHD3-201ENST00000330494 NBPF8Q3BBV2 869 aa12.45□□□□□ -0.42
CHD3-201ENST00000330494 PROSER2Q86WR7 435 aaPredicted RBP12.45□□□□□ -0.42
CHD3-201ENST00000330494 TSR2Q969E8 191 aaKnown RBP12.45□□□□□ -0.42
CHD3-201ENST00000330494 SLC26A8Q96RN1 970 aa12.45□□□□□ -0.42
CHD3-201ENST00000330494 SYNE3Q6ZMZ3 975 aa12.45□□□□□ -0.42
CHD3-201ENST00000330494 RRBP1Q9P2E9 1410 aaKnown RBP12.44□□□□□ -0.42
CHD3-201ENST00000330494 TCP11L2Q8N4U5 519 aa12.44□□□□□ -0.42
CHD3-201ENST00000330494 PPP2R1AP30153 589 aa12.44□□□□□ -0.42
CHD3-201ENST00000330494 SUPT6HQ7KZ85 1726 aaKnown RBP12.44□□□□□ -0.42
CHD3-201ENST00000330494 CCDC27Q2M243 656 aa12.44□□□□□ -0.42
CHD3-201ENST00000330494 RBM42Q9BTD8 480 aaKnown RBP12.44□□□□□ -0.42
CHD3-201ENST00000330494 CABP1Q9NZU7 370 aa12.44□□□□□ -0.42
CHD3-201ENST00000330494 NFXL1Q6ZNB6 911 aa12.43□□□□□ -0.42
CHD3-201ENST00000330494 TOP2BQ02880 1626 aa12.43□□□□□ -0.42
CHD3-201ENST00000330494 POLA1P09884 1462 aaPredicted RBP12.43□□□□□ -0.42
CHD3-201ENST00000330494 RUFY2Q8WXA3 655 aa12.43□□□□□ -0.42
CHD3-201ENST00000330494 CCDC34Q96HJ3 373 aa12.43□□□□□ -0.42
CHD3-201ENST00000330494 KIF3AQ9Y496 699 aa12.42□□□□□ -0.42
CHD3-201ENST00000330494 ERICH3Q5RHP9 1530 aa12.42□□□□□ -0.42
CHD3-201ENST00000330494 HECW1Q76N89 1606 aa12.42□□□□□ -0.42
CHD3-201ENST00000330494 PHF14O94880 888 aa12.42□□□□□ -0.42
CHD3-201ENST00000330494 UBTFL1P0CB47 393 aaPredicted RBP12.42□□□□□ -0.42
CHD3-201ENST00000330494 EXOSC9Q06265 439 aaKnown RBP12.42□□□□□ -0.42
CHD3-201ENST00000330494 WASHC4Q2M389 1173 aa12.41□□□□□ -0.42
CHD3-201ENST00000330494 EHBP1L1Q8N3D4 1523 aa12.41□□□□□ -0.42
CHD3-201ENST00000330494 RRS1Q15050 365 aaKnown RBP12.41□□□□□ -0.42
CHD3-201ENST00000330494 ZKSCAN1P17029 563 aaPredicted RBP12.41□□□□□ -0.42
CHD3-201ENST00000330494 DDX54Q8TDD1 881 aaKnown RBP12.41□□□□□ -0.42
CHD3-201ENST00000330494 VPS37CA5D8V6 355 aaPredicted RBP12.41□□□□□ -0.42
CHD3-201ENST00000330494 DDX11L8A8MPP1 907 aa12.41□□□□□ -0.42
CHD3-201ENST00000330494 AMOTL1Q8IY63 956 aa12.41□□□□□ -0.42
CHD3-201ENST00000330494 ROCK1Q13464 1354 aa12.41□□□□□ -0.42
CHD3-201ENST00000330494 REC8O95072 547 aa12.41□□□□□ -0.42
CHD3-201ENST00000330494 RBM33Q96EV2 1170 aaKnown RBP12.41□□□□□ -0.42
CHD3-201ENST00000330494 GPRASP1Q5JY77 1395 aa12.4□□□□□ -0.42
CHD3-201ENST00000330494 SULT6B1Q6IMI4 303 aa12.4□□□□□ -0.42
CHD3-201ENST00000330494 CPLX1O14810 134 aa12.4□□□□□ -0.42
CHD3-201ENST00000330494 BCAR3O75815 825 aa12.4□□□□□ -0.42
CHD3-201ENST00000330494 TRIM29Q14134 588 aa12.4□□□□□ -0.42
CHD3-201ENST00000330494 STK11IPQ8N1F8 1099 aa12.39□□□□□ -0.43
CHD3-201ENST00000330494 PIP4K2BP78356 416 aa12.39□□□□□ -0.43
CHD3-201ENST00000330494 DNAJC5BQ9UF47 199 aa12.39□□□□□ -0.43
CHD3-201ENST00000330494 NOB1Q9ULX3 412 aaKnown RBP12.39□□□□□ -0.43
CHD3-201ENST00000330494 IFT140Q96RY7 1462 aa12.39□□□□□ -0.43
CHD3-201ENST00000330494 GOLGA6L19H0YKK7 550 aa12.39□□□□□ -0.43
CHD3-201ENST00000330494 TRDNQ13061 729 aa12.39□□□□□ -0.43
CHD3-201ENST00000330494 CTDP1Q9Y5B0 961 aaPredicted RBP12.39□□□□□ -0.43
CHD3-201ENST00000330494 ERBINQ96RT1 1412 aa12.39□□□□□ -0.43
CHD3-201ENST00000330494 MAP4K4O95819 1239 aaPredicted RBP12.38□□□□□ -0.43
CHD3-201ENST00000330494 DNAJC2Q99543 621 aaKnown RBP12.38□□□□□ -0.43
CHD3-201ENST00000330494 BCL11BQ9C0K0 894 aaPredicted RBP12.38□□□□□ -0.43
CHD3-201ENST00000330494 MYL6BP14649 208 aa12.38□□□□□ -0.43
CHD3-201ENST00000330494 LRRFIP1Q32MZ4 808 aaKnown RBP12.38□□□□□ -0.43
CHD3-201ENST00000330494 INTS3Q68E01 1043 aaKnown RBP12.38□□□□□ -0.43
CHD3-201ENST00000330494 CCDC184Q52MB2 194 aa12.38□□□□□ -0.43
CHD3-201ENST00000330494 TIAM1Q13009 1591 aa12.38□□□□□ -0.43
CHD3-201ENST00000330494 BECN2A8MW95 431 aa12.37□□□□□ -0.43
CHD3-201ENST00000330494 TCEAL9Q9UHQ7 104 aa12.37□□□□□ -0.43
CHD3-201ENST00000330494 CCAR2Q8N163 923 aaKnown RBP12.37□□□□□ -0.43
CHD3-201ENST00000330494 BICD2Q8TD16 824 aa12.37□□□□□ -0.43
CHD3-201ENST00000330494 WDR97A6NE52 1622 aa12.37□□□□□ -0.43
CHD3-201ENST00000330494 SURF6O75683 361 aaKnown RBP12.37□□□□□ -0.43
CHD3-201ENST00000330494 KIAA1107Q9UPP5 1409 aa12.37□□□□□ -0.43
CHD3-201ENST00000330494 PKNOX2Q96KN3 472 aa12.37□□□□□ -0.43
CHD3-201ENST00000330494 SIL1Q9H173 461 aa12.37□□□□□ -0.43
CHD3-201ENST00000330494 ARHGEF11O15085 1522 aa12.37□□□□□ -0.43
CHD3-201ENST00000330494 AKNAQ7Z591 1439 aa12.37□□□□□ -0.43
CHD3-201ENST00000330494 PPP1R1BQ9UD71 204 aaPredicted RBP12.37□□□□□ -0.43
CHD3-201ENST00000330494 C22orf23Q9BZE7 217 aa12.36□□□□□ -0.43
CHD3-201ENST00000330494 PRKCSHP14314 528 aaPredicted RBP12.36□□□□□ -0.43
CHD3-201ENST00000330494 TWISTNBQ3B726 338 aaPredicted RBP12.36□□□□□ -0.43
CHD3-201ENST00000330494 BRD4O60885 1362 aaPredicted RBP12.36□□□□□ -0.43
CHD3-201ENST00000330494 CCDC30Q5VVM6 783 aa12.36□□□□□ -0.43
CHD3-201ENST00000330494 TOM1L2Q6ZVM7 507 aa12.36□□□□□ -0.43
CHD3-201ENST00000330494 DAPK1P53355 1430 aa12.36□□□□□ -0.43
CHD3-201ENST00000330494 ERICH2A1L162 156 aa12.36□□□□□ -0.43
CHD3-201ENST00000330494 EFCAB5A4FU69 1503 aa12.36□□□□□ -0.43
CHD3-201ENST00000330494 PCMTD1Q96MG8 357 aaPredicted RBP12.35□□□□□ -0.43
CHD3-201ENST00000330494 SMC3Q9UQE7 1217 aa12.35□□□□□ -0.43
CHD3-201ENST00000330494 CPLX2Q6PUV4 134 aaKnown RBP12.35□□□□□ -0.43
CHD3-201ENST00000330494 RNF20Q5VTR2 975 aa12.35□□□□□ -0.43
CHD3-201ENST00000330494 ZNF592Q92610 1267 aa12.35□□□□□ -0.43
CHD3-201ENST00000330494 FBXO3Q9UK99 471 aa12.35□□□□□ -0.43
CHD3-201ENST00000330494 ERC2O15083 957 aa12.35□□□□□ -0.43
CHD3-201ENST00000330494 SLC4A2P04920 1241 aa12.35□□□□□ -0.43
CHD3-201ENST00000330494 PLEKHO1Q53GL0 409 aaPredicted RBP12.35□□□□□ -0.43
CHD3-201ENST00000330494 PCF11O94913 1555 aaKnown RBP12.34□□□□□ -0.43
CHD3-201ENST00000330494 KIF6Q6ZMV9 814 aa12.34□□□□□ -0.43
CHD3-201ENST00000330494 TPM3P06753 285 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms