RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 ARHGAP23Q9P227 1491 aa25.05■■□□□ 1.6
USP39-201ENST00000323701 SLIT1O75093 1534 aa25.04■■□□□ 1.6
USP39-201ENST00000323701 ABCC11Q96J66 1382 aa25.04■■□□□ 1.6
USP39-201ENST00000323701 PNISRQ8TF01 805 aaKnown RBP25.03■■□□□ 1.6
USP39-201ENST00000323701 PLEKHG1Q9ULL1 1385 aa25.03■■□□□ 1.6
USP39-201ENST00000323701 DLC1Q96QB1 1528 aa25.02■■□□□ 1.6
USP39-201ENST00000323701 BRD4O60885 1362 aaPredicted RBP25.02■■□□□ 1.6
USP39-201ENST00000323701 NLRP13Q86W25 1043 aa25.01■■□□□ 1.59
USP39-201ENST00000323701 SLC26A8Q96RN1 970 aa25.01■■□□□ 1.59
USP39-201ENST00000323701 THEMISQ8N1K5 641 aaPredicted RBP25■■□□□ 1.59
USP39-201ENST00000323701 SRPK2P78362 688 aaKnown RBP24.99■■□□□ 1.59
USP39-201ENST00000323701 CEP170BQ9Y4F5 1589 aaPredicted RBP24.99■■□□□ 1.59
USP39-201ENST00000323701 PUS7Q96PZ0 661 aaKnown RBP24.98■■□□□ 1.59
USP39-201ENST00000323701 EID1Q9Y6B2 187 aa24.98■■□□□ 1.59
USP39-201ENST00000323701 MED14O60244 1454 aa24.98■■□□□ 1.59
USP39-201ENST00000323701 CDK19Q9BWU1 502 aa24.96■■□□□ 1.59
USP39-201ENST00000323701 NSD3Q9BZ95 1437 aa24.96■■□□□ 1.59
USP39-201ENST00000323701 NPC1L1Q9UHC9 1359 aa24.96■■□□□ 1.59
USP39-201ENST00000323701 TECPR2O15040 1411 aa24.95■■□□□ 1.58
USP39-201ENST00000323701 SENP3-EIF4A1A0A087X0R7 540 aa24.94■■□□□ 1.58
USP39-201ENST00000323701 PTPRUQ92729 1446 aa24.94■■□□□ 1.58
USP39-201ENST00000323701 ROBO2Q9HCK4 1378 aa24.94■■□□□ 1.58
USP39-201ENST00000323701 PPP2R1AP30153 589 aa24.94■■□□□ 1.58
USP39-201ENST00000323701 KNDC1Q76NI1 1749 aa24.92■■□□□ 1.58
USP39-201ENST00000323701 CPS1P31327 1500 aa24.91■■□□□ 1.58
USP39-201ENST00000323701 ANKRD36BQ8N2N9 1353 aa24.9■■□□□ 1.58
USP39-201ENST00000323701 FAM135BQ49AJ0 1406 aa24.89■■□□□ 1.58
USP39-201ENST00000323701 A0A1W2PP64 1363 aa24.89■■□□□ 1.58
USP39-201ENST00000323701 CD163L1Q9NR16 1453 aa24.89■■□□□ 1.57
USP39-201ENST00000323701 ATAD2Q6PL18 1390 aa24.88■■□□□ 1.57
USP39-201ENST00000323701 SIRT1Q96EB6 747 aa24.87■■□□□ 1.57
USP39-201ENST00000323701 ZNF142P52746 1687 aaPredicted RBP24.86■■□□□ 1.57
USP39-201ENST00000323701 TBX22Q9Y458 520 aa24.86■■□□□ 1.57
USP39-201ENST00000323701 CABP1Q9NZU7 370 aa24.86■■□□□ 1.57
USP39-201ENST00000323701 SETD1BQ9UPS6 1966 aaKnown RBP24.85■■□□□ 1.57
USP39-201ENST00000323701 WASLO00401 505 aaPredicted RBP24.85■■□□□ 1.57
USP39-201ENST00000323701 AMOTL2Q9Y2J4 779 aa24.84■■□□□ 1.57
USP39-201ENST00000323701 NCKAP5LQ9HCH0 1330 aa24.83■■□□□ 1.57
USP39-201ENST00000323701 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.83■■□□□ 1.56
USP39-201ENST00000323701 ZBED9Q6R2W3 1325 aa24.83■■□□□ 1.56
USP39-201ENST00000323701 NINLQ9Y2I6 1382 aa24.83■■□□□ 1.56
USP39-201ENST00000323701 USP32Q8NFA0 1604 aa24.81■■□□□ 1.56
USP39-201ENST00000323701 CGNL1Q0VF96 1302 aa24.8■■□□□ 1.56
USP39-201ENST00000323701 TNNT2P45379 298 aaPredicted RBP24.8■■□□□ 1.56
USP39-201ENST00000323701 ANKLE2Q86XL3 938 aa24.78■■□□□ 1.56
USP39-201ENST00000323701 MORC1Q86VD1 984 aa24.77■■□□□ 1.56
USP39-201ENST00000323701 DIP2AQ14689 1571 aa24.77■■□□□ 1.56
USP39-201ENST00000323701 PRR36Q9H6K5 1346 aa24.77■■□□□ 1.56
USP39-201ENST00000323701 TERF2IPQ9NYB0 399 aa24.77■■□□□ 1.56
USP39-201ENST00000323701 NUDT16Q96DE0 195 aaKnown RBP24.76■■□□□ 1.55
USP39-201ENST00000323701 ADAMTS8Q9UP79 889 aa24.75■■□□□ 1.55
USP39-201ENST00000323701 KCNA6P17658 529 aa24.74■■□□□ 1.55
USP39-201ENST00000323701 XRN1Q8IZH2 1706 aaKnown RBP24.74■■□□□ 1.55
USP39-201ENST00000323701 PPIP5K1Q6PFW1 1433 aa24.74■■□□□ 1.55
USP39-201ENST00000323701 GGNBP2Q9H3C7 697 aa24.73■■□□□ 1.55
USP39-201ENST00000323701 FYB1O15117 783 aa24.73■■□□□ 1.55
USP39-201ENST00000323701 PTCH1Q13635 1447 aa24.73■■□□□ 1.55
USP39-201ENST00000323701 ATP7BP35670 1465 aa24.72■■□□□ 1.55
USP39-201ENST00000323701 NUTM2FA1L443 756 aa24.72■■□□□ 1.55
USP39-201ENST00000323701 ADGRB2O60241 1585 aa24.71■■□□□ 1.55
USP39-201ENST00000323701 HDGFL2Q7Z4V5 671 aaPredicted RBP24.71■■□□□ 1.55
USP39-201ENST00000323701 CCDC61Q9Y6R9 512 aa24.69■■□□□ 1.54
USP39-201ENST00000323701 BLMP54132 1417 aaPredicted RBP24.69■■□□□ 1.54
USP39-201ENST00000323701 CPSF1Q10570 1443 aaKnown RBP24.69■■□□□ 1.54
USP39-201ENST00000323701 SALL2Q9Y467 1007 aaPredicted RBP24.69■■□□□ 1.54
USP39-201ENST00000323701 NSD2O96028 1365 aa24.68■■□□□ 1.54
USP39-201ENST00000323701 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.68■■□□□ 1.54
USP39-201ENST00000323701 PIK3R4Q99570 1358 aa24.66■■□□□ 1.54
USP39-201ENST00000323701 MTHFSP49914 203 aa24.65■■□□□ 1.54
USP39-201ENST00000323701 RBM33Q96EV2 1170 aaKnown RBP24.65■■□□□ 1.54
USP39-201ENST00000323701 WDR43Q15061 677 aaKnown RBP eCLIP24.64■■□□□ 1.54
USP39-201ENST00000323701 POLR3AO14802 1390 aaPredicted RBP24.64■■□□□ 1.54
USP39-201ENST00000323701 CDC42BPGQ6DT37 1551 aa24.64■■□□□ 1.53
USP39-201ENST00000323701 NPHP4O75161 1426 aaPredicted RBP24.64■■□□□ 1.53
USP39-201ENST00000323701 CHD2O14647 1828 aaKnown RBP24.63■■□□□ 1.53
USP39-201ENST00000323701 INSRP06213 1382 aa24.62■■□□□ 1.53
USP39-201ENST00000323701 NKTRP30414 1462 aaKnown RBP24.61■■□□□ 1.53
USP39-201ENST00000323701 TOPAZ1Q8N9V7 1692 aa24.61■■□□□ 1.53
USP39-201ENST00000323701 ANKRD26Q9UPS8 1709 aa24.61■■□□□ 1.53
USP39-201ENST00000323701 FBLN1P23142 703 aa24.6■■□□□ 1.53
USP39-201ENST00000323701 ZRANB1Q9UGI0 708 aa24.6■■□□□ 1.53
USP39-201ENST00000323701 KIF20BQ96Q89 1820 aa24.6■■□□□ 1.53
USP39-201ENST00000323701 KDM4FA0A1W2PPD8 638 aa24.6■■□□□ 1.53
USP39-201ENST00000323701 SHPRHQ149N8 1683 aa24.6■■□□□ 1.53
USP39-201ENST00000323701 MYT1Q01538 1121 aa24.59■■□□□ 1.53
USP39-201ENST00000323701 NME9Q86XW9 330 aa24.59■■□□□ 1.53
USP39-201ENST00000323701 SUPT16HQ9Y5B9 1047 aaKnown RBP24.59■■□□□ 1.53
USP39-201ENST00000323701 EDC4Q6P2E9 1401 aaKnown RBP24.59■■□□□ 1.53
USP39-201ENST00000323701 CCDC146Q8IYE0 955 aa24.59■■□□□ 1.53
USP39-201ENST00000323701 AKAP12Q02952 1782 aa24.58■■□□□ 1.53
USP39-201ENST00000323701 MON2Q7Z3U7 1717 aa24.58■■□□□ 1.52
USP39-201ENST00000323701 ACEP12821 1306 aa24.57■■□□□ 1.52
USP39-201ENST00000323701 RGPD8O14715 1765 aaPredicted RBP24.57■■□□□ 1.52
USP39-201ENST00000323701 PLEKHG3A1L390 1219 aa24.56■■□□□ 1.52
USP39-201ENST00000323701 SMG6Q86US8 1419 aaKnown RBP24.55■■□□□ 1.52
USP39-201ENST00000323701 ITSN1Q15811 1721 aa24.55■■□□□ 1.52
USP39-201ENST00000323701 PMFBP1Q8TBY8 1022 aa24.54■■□□□ 1.52
USP39-201ENST00000323701 HSPA2P54652 639 aa24.53■■□□□ 1.52
USP39-201ENST00000323701 FKBP8Q14318 412 aa24.53■■□□□ 1.52
USP39-201ENST00000323701 CDCA7LQ96GN5 454 aa24.53■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms