RNA–Protein interactions for RNA: ENST00000321728.11

PRKCB-202, Transcript of protein kinase C beta, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PRKCB, Length 2,689 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKCB-202ENST00000321728 TCP11L2Q8N4U5 519 aa22.66■■□□□ 1.22
PRKCB-202ENST00000321728 GLIPR1L2Q4G1C9 344 aa22.65■■□□□ 1.22
PRKCB-202ENST00000321728 RUNDC1Q96C34 613 aa22.65■■□□□ 1.22
PRKCB-202ENST00000321728 STAC3Q96MF2 364 aa22.65■■□□□ 1.22
PRKCB-202ENST00000321728 POLR3AO14802 1390 aaPredicted RBP22.65■■□□□ 1.22
PRKCB-202ENST00000321728 SPHKAPQ2M3C7 1700 aa22.64■■□□□ 1.22
PRKCB-202ENST00000321728 MRE11P49959 708 aa22.64■■□□□ 1.21
PRKCB-202ENST00000321728 KIF3BO15066 747 aa22.63■■□□□ 1.21
PRKCB-202ENST00000321728 UGGT1Q9NYU2 1555 aa22.62■■□□□ 1.21
PRKCB-202ENST00000321728 CHGAP10645 457 aaKnown RBP22.62■■□□□ 1.21
PRKCB-202ENST00000321728 MORC1Q86VD1 984 aa22.62■■□□□ 1.21
PRKCB-202ENST00000321728 CEP152O94986 1710 aa22.62■■□□□ 1.21
PRKCB-202ENST00000321728 SLC24A1O60721 1099 aa22.61■■□□□ 1.21
PRKCB-202ENST00000321728 HSP90AA1P07900 732 aaKnown RBP22.61■■□□□ 1.21
PRKCB-202ENST00000321728 ERVK-7P63135 1459 aa22.61■■□□□ 1.21
PRKCB-202ENST00000321728 FTSJ3Q8IY81 847 aaKnown RBP22.61■■□□□ 1.21
PRKCB-202ENST00000321728 ADGRF5Q8IZF2 1346 aa22.61■■□□□ 1.21
PRKCB-202ENST00000321728 MVPQ14764 893 aaKnown RBP22.6■■□□□ 1.21
PRKCB-202ENST00000321728 WDR63Q8IWG1 891 aa22.6■■□□□ 1.21
PRKCB-202ENST00000321728 HSCBQ8IWL3 235 aa22.6■■□□□ 1.21
PRKCB-202ENST00000321728 MYH16Q9H6N6 1097 aa22.6■■□□□ 1.21
PRKCB-202ENST00000321728 CLTCL1P53675 1640 aa22.6■■□□□ 1.21
PRKCB-202ENST00000321728 PLCH2O75038 1416 aa22.59■■□□□ 1.21
PRKCB-202ENST00000321728 GRPEL1Q9HAV7 217 aa22.59■■□□□ 1.21
PRKCB-202ENST00000321728 TRPM2O94759 1503 aa22.59■■□□□ 1.21
PRKCB-202ENST00000321728 DDX11L8A8MPP1 907 aa22.58■■□□□ 1.2
PRKCB-202ENST00000321728 HSP90AA2PQ14568 343 aaPredicted RBP22.57■■□□□ 1.2
PRKCB-202ENST00000321728 ZKSCAN2Q63HK3 967 aa22.56■■□□□ 1.2
PRKCB-202ENST00000321728 RTEL1-TNFRSF6BF6WH68 1400 aa22.56■■□□□ 1.2
PRKCB-202ENST00000321728 DZIP1LQ8IYY4 767 aaKnown RBP22.55■■□□□ 1.2
PRKCB-202ENST00000321728 PHF23Q9BUL5 403 aaPredicted RBP22.55■■□□□ 1.2
PRKCB-202ENST00000321728 ABCC1P33527 1531 aa22.54■■□□□ 1.2
PRKCB-202ENST00000321728 ESPNB1AK53 854 aa22.53■■□□□ 1.2
PRKCB-202ENST00000321728 NSD3Q9BZ95 1437 aa22.53■■□□□ 1.2
PRKCB-202ENST00000321728 NUTM2DQ5VT03 806 aaPredicted RBP22.52■■□□□ 1.2
PRKCB-202ENST00000321728 TRAK1Q9UPV9 953 aa22.52■■□□□ 1.2
PRKCB-202ENST00000321728 ZCCHC11Q5TAX3 1644 aaKnown RBP22.52■■□□□ 1.2
PRKCB-202ENST00000321728 PTPRTO14522 1441 aa22.52■■□□□ 1.2
PRKCB-202ENST00000321728 TRIM44Q96DX7 344 aaPredicted RBP22.52■■□□□ 1.2
PRKCB-202ENST00000321728 SHPRHQ149N8 1683 aa22.52■■□□□ 1.2
PRKCB-202ENST00000321728 IQSEC2Q5JU85 1478 aa22.51■■□□□ 1.19
PRKCB-202ENST00000321728 MTHFSP49914 203 aa22.51■■□□□ 1.19
PRKCB-202ENST00000321728 VSIG10Q8N0Z9 540 aa22.51■■□□□ 1.19
PRKCB-202ENST00000321728 RRP9O43818 475 aaKnown RBP22.51■■□□□ 1.19
PRKCB-202ENST00000321728 ZNF692Q9BU19 519 aaPredicted RBP22.5■■□□□ 1.19
PRKCB-202ENST00000321728 CCDC27Q2M243 656 aa22.5■■□□□ 1.19
PRKCB-202ENST00000321728 ITPRIPQ8IWB1 547 aa22.5■■□□□ 1.19
PRKCB-202ENST00000321728 PKNOX2Q96KN3 472 aa22.5■■□□□ 1.19
PRKCB-202ENST00000321728 CFAP53Q96M91 514 aa22.5■■□□□ 1.19
PRKCB-202ENST00000321728 SMC4Q9NTJ3 1288 aa22.5■■□□□ 1.19
PRKCB-202ENST00000321728 ISY1Q9ULR0 285 aaKnown RBP22.49■■□□□ 1.19
PRKCB-202ENST00000321728 TMEM132EQ6IEE7 984 aa22.49■■□□□ 1.19
PRKCB-202ENST00000321728 SLC12A5Q9H2X9 1139 aa22.49■■□□□ 1.19
PRKCB-202ENST00000321728 KIAA1210Q9ULL0 1709 aa22.48■■□□□ 1.19
PRKCB-202ENST00000321728 ERBB4Q15303 1308 aa22.48■■□□□ 1.19
PRKCB-202ENST00000321728 TSR2Q969E8 191 aaKnown RBP22.48■■□□□ 1.19
PRKCB-202ENST00000321728 U2AF1L5P0DN76 240 aaPredicted RBP22.47■■□□□ 1.19
PRKCB-202ENST00000321728 U2AF1Q01081 240 aaKnown RBP eCLIP22.47■■□□□ 1.19
PRKCB-202ENST00000321728 HDAC1Q13547 482 aaPredicted RBP22.47■■□□□ 1.19
PRKCB-202ENST00000321728 TNPO1Q92973 898 aaKnown RBP22.47■■□□□ 1.19
PRKCB-202ENST00000321728 CFAP65Q6ZU64 1925 aaKnown RBP22.46■■□□□ 1.19
PRKCB-202ENST00000321728 ZFYVE16Q7Z3T8 1539 aa22.46■■□□□ 1.19
PRKCB-202ENST00000321728 HSP90AB1P08238 724 aaKnown RBP22.46■■□□□ 1.19
PRKCB-202ENST00000321728 KANK1Q14678 1352 aa22.46■■□□□ 1.19
PRKCB-202ENST00000321728 TRIM27P14373 513 aa22.45■■□□□ 1.19
PRKCB-202ENST00000321728 DDX19BQ9UMR2 479 aa22.45■■□□□ 1.18
PRKCB-202ENST00000321728 SHROOM2Q13796 1616 aa22.45■■□□□ 1.18
PRKCB-202ENST00000321728 GBP4Q96PP9 640 aa22.44■■□□□ 1.18
PRKCB-202ENST00000321728 GAS2L3Q86XJ1 694 aa22.44■■□□□ 1.18
PRKCB-202ENST00000321728 ABCA6Q8N139 1617 aa22.43■■□□□ 1.18
PRKCB-202ENST00000321728 EXOSC9Q06265 439 aaKnown RBP22.43■■□□□ 1.18
PRKCB-202ENST00000321728 DDIT3P35638 169 aa22.43■■□□□ 1.18
PRKCB-202ENST00000321728 SAFB2Q14151 953 aaKnown RBP eCLIP22.43■■□□□ 1.184e-7■■■■□ 20.4
PRKCB-202ENST00000321728 MAP3K4Q9Y6R4 1608 aa22.42■■□□□ 1.18
PRKCB-202ENST00000321728 NCOA3Q9Y6Q9 1424 aa22.42■■□□□ 1.18
PRKCB-202ENST00000321728 SMC5Q8IY18 1101 aa22.42■■□□□ 1.18
PRKCB-202ENST00000321728 ZMYND15Q9H091 742 aa22.42■■□□□ 1.18
PRKCB-202ENST00000321728 RBM25P49756 843 aaKnown RBP22.41■■□□□ 1.18
PRKCB-202ENST00000321728 SNX21Q969T3 373 aa22.41■■□□□ 1.18
PRKCB-202ENST00000321728 ZNF518AQ6AHZ1 1483 aa22.41■■□□□ 1.18
PRKCB-202ENST00000321728 ATF7IPQ6VMQ6 1270 aa22.41■■□□□ 1.18
PRKCB-202ENST00000321728 SSH1Q8WYL5 1049 aa22.41■■□□□ 1.18
PRKCB-202ENST00000321728 CT47B1P0C2W7 299 aaPredicted RBP22.4■■□□□ 1.18
PRKCB-202ENST00000321728 FOXD4L1Q9NU39 408 aa22.4■■□□□ 1.18
PRKCB-202ENST00000321728 SKOR2Q2VWA4 1001 aaPredicted RBP22.39■■□□□ 1.18
PRKCB-202ENST00000321728 LNPKQ9C0E8 428 aa22.39■■□□□ 1.18
PRKCB-202ENST00000321728 CIZ1Q9ULV3 898 aaPredicted RBP22.39■■□□□ 1.17
PRKCB-202ENST00000321728 NOB1Q9ULX3 412 aaKnown RBP22.39■■□□□ 1.17
PRKCB-202ENST00000321728 SBNO2Q9Y2G9 1366 aa22.39■■□□□ 1.17
PRKCB-202ENST00000321728 TET3O43151 1660 aa22.38■■□□□ 1.17
PRKCB-202ENST00000321728 MYOM2P54296 1465 aa22.38■■□□□ 1.17
PRKCB-202ENST00000321728 NOS1P29475 1434 aa22.38■■□□□ 1.17
PRKCB-202ENST00000321728 RAB3GAP1Q15042 981 aa22.37■■□□□ 1.17
PRKCB-202ENST00000321728 TMEM57Q8N5G2 664 aa22.37■■□□□ 1.17
PRKCB-202ENST00000321728 FANCAO15360 1455 aa22.36■■□□□ 1.17
PRKCB-202ENST00000321728 GGT6Q6P531 493 aa22.36■■□□□ 1.17
PRKCB-202ENST00000321728 ATP7AQ04656 1500 aa22.36■■□□□ 1.17
PRKCB-202ENST00000321728 NUCB1Q02818 461 aa22.34■■□□□ 1.17
PRKCB-202ENST00000321728 ZBTB40Q9NUA8 1239 aa22.34■■□□□ 1.17
PRKCB-202ENST00000321728 U2SURPO15042 1029 aaKnown RBP22.34■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 113.5 ms