RNA–Protein interactions for RNA: ENST00000318007.9

PDLIM5-202, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 1,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-202ENST00000318007 DLC1Q96QB1 1528 aa21.48■■□□□ 1.03
PDLIM5-202ENST00000318007 PROSER2Q86WR7 435 aaPredicted RBP21.46■■□□□ 1.03
PDLIM5-202ENST00000318007 PTCH1Q13635 1447 aa21.45■■□□□ 1.02
PDLIM5-202ENST00000318007 CABP2Q9NPB3 220 aa21.45■■□□□ 1.02
PDLIM5-202ENST00000318007 DMRT2Q9Y5R5 561 aa21.45■■□□□ 1.02
PDLIM5-202ENST00000318007 SRPK2P78362 688 aaKnown RBP21.45■■□□□ 1.02
PDLIM5-202ENST00000318007 FAM135BQ49AJ0 1406 aa21.44■■□□□ 1.02
PDLIM5-202ENST00000318007 DDX10Q13206 875 aaKnown RBP21.44■■□□□ 1.02
PDLIM5-202ENST00000318007 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.44■■□□□ 1.02
PDLIM5-202ENST00000318007 TULP4Q9NRJ4 1543 aa21.43■■□□□ 1.02
PDLIM5-202ENST00000318007 CCDC7Q96M83 1385 aa21.42■■□□□ 1.02
PDLIM5-202ENST00000318007 NWD1Q149M9 1564 aa21.42■■□□□ 1.02
PDLIM5-202ENST00000318007 EVC2Q86UK5 1308 aa21.4■■□□□ 1.02
PDLIM5-202ENST00000318007 CDK19Q9BWU1 502 aa21.4■■□□□ 1.02
PDLIM5-202ENST00000318007 TMEM94Q12767 1356 aa21.39■■□□□ 1.01
PDLIM5-202ENST00000318007 SBNO2Q9Y2G9 1366 aa21.38■■□□□ 1.01
PDLIM5-202ENST00000318007 NALCNQ8IZF0 1738 aa21.38■■□□□ 1.01
PDLIM5-202ENST00000318007 CNGB1Q14028 1251 aaPredicted RBP21.38■■□□□ 1.01
PDLIM5-202ENST00000318007 TMC1Q8TDI8 760 aa21.38■■□□□ 1.01
PDLIM5-202ENST00000318007 SIRT1Q96EB6 747 aa21.37■■□□□ 1.01
PDLIM5-202ENST00000318007 NKTRP30414 1462 aaKnown RBP21.37■■□□□ 1.01
PDLIM5-202ENST00000318007 WASLO00401 505 aaPredicted RBP21.36■■□□□ 1.01
PDLIM5-202ENST00000318007 CDCA8Q53HL2 280 aa21.32■■□□□ 1
PDLIM5-202ENST00000318007 SLC12A5Q9H2X9 1139 aa21.32■■□□□ 1
PDLIM5-202ENST00000318007 LRRC7Q96NW7 1537 aa21.31■■□□□ 1
PDLIM5-202ENST00000318007 ADGRL3Q9HAR2 1447 aa21.31■■□□□ 1
PDLIM5-202ENST00000318007 PRR36Q9H6K5 1346 aa21.3■■□□□ 1
PDLIM5-202ENST00000318007 ADGRB2O60241 1585 aa21.29■■□□□ 1
PDLIM5-202ENST00000318007 SLC24A1O60721 1099 aa21.28■■□□□ 1
PDLIM5-202ENST00000318007 NUDT16Q96DE0 195 aaKnown RBP21.28■■□□□ 1
PDLIM5-202ENST00000318007 XIRP1Q702N8 1843 aaKnown RBP21.28■■□□□ 1
PDLIM5-202ENST00000318007 MYOM1P52179 1685 aa21.28■■□□□ 1
PDLIM5-202ENST00000318007 DIEXFQ68CQ4 756 aaKnown RBP21.28■■□□□ 1
PDLIM5-202ENST00000318007 CABP1Q9NZU7 370 aa21.28■■□□□ 1
PDLIM5-202ENST00000318007 PMFBP1Q8TBY8 1022 aa21.27■□□□□ 0.99
PDLIM5-202ENST00000318007 C19orf44Q9H6X5 657 aa21.27■□□□□ 0.99
PDLIM5-202ENST00000318007 RGPD8O14715 1765 aaPredicted RBP21.26■□□□□ 0.99
PDLIM5-202ENST00000318007 PANK3Q9H999 370 aa21.26■□□□□ 0.99
PDLIM5-202ENST00000318007 ATP7BP35670 1465 aa21.26■□□□□ 0.99
PDLIM5-202ENST00000318007 ATF3P18847 181 aa21.25■□□□□ 0.99
PDLIM5-202ENST00000318007 MSH6P52701 1360 aa21.25■□□□□ 0.99
PDLIM5-202ENST00000318007 PPIP5K1Q6PFW1 1433 aa21.24■□□□□ 0.99
PDLIM5-202ENST00000318007 ATAD2Q6PL18 1390 aa21.24■□□□□ 0.99
PDLIM5-202ENST00000318007 CDC42BPGQ6DT37 1551 aa21.24■□□□□ 0.99
PDLIM5-202ENST00000318007 USP32Q8NFA0 1604 aa21.23■□□□□ 0.99
PDLIM5-202ENST00000318007 LTBP4Q8N2S1 1624 aa21.23■□□□□ 0.99
PDLIM5-202ENST00000318007 FMN2Q9NZ56 1722 aa21.22■□□□□ 0.99
PDLIM5-202ENST00000318007 ESCO1Q5FWF5 840 aa21.22■□□□□ 0.99
PDLIM5-202ENST00000318007 CCDC61Q9Y6R9 512 aa21.21■□□□□ 0.99
PDLIM5-202ENST00000318007 ORAI2Q96SN7 254 aa21.21■□□□□ 0.99
PDLIM5-202ENST00000318007 A0A1W2PP64 1363 aa21.19■□□□□ 0.98
PDLIM5-202ENST00000318007 PHF23Q9BUL5 403 aaPredicted RBP21.18■□□□□ 0.98
PDLIM5-202ENST00000318007 CADPS2Q86UW7 1296 aa21.17■□□□□ 0.98
PDLIM5-202ENST00000318007 NGDNQ8NEJ9 315 aaKnown RBP21.16■□□□□ 0.98
PDLIM5-202ENST00000318007 CARD14Q9BXL6 1004 aa21.16■□□□□ 0.98
PDLIM5-202ENST00000318007 ACEP12821 1306 aa21.16■□□□□ 0.98
PDLIM5-202ENST00000318007 XPCQ01831 940 aaPredicted RBP21.16■□□□□ 0.98
PDLIM5-202ENST00000318007 DDX17Q92841 729 aaKnown RBP21.16■□□□□ 0.98
PDLIM5-202ENST00000318007 TOPAZ1Q8N9V7 1692 aa21.15■□□□□ 0.98
PDLIM5-202ENST00000318007 CD163L1Q9NR16 1453 aa21.15■□□□□ 0.98
PDLIM5-202ENST00000318007 MST1RQ04912 1400 aa21.15■□□□□ 0.98
PDLIM5-202ENST00000318007 NCOA3Q9Y6Q9 1424 aa21.15■□□□□ 0.98
PDLIM5-202ENST00000318007 CC2D1BQ5T0F9 858 aaKnown RBP21.14■□□□□ 0.98
PDLIM5-202ENST00000318007 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.14■□□□□ 0.98
PDLIM5-202ENST00000318007 PUS7Q96PZ0 661 aaKnown RBP21.14■□□□□ 0.98
PDLIM5-202ENST00000318007 NSD3Q9BZ95 1437 aa21.14■□□□□ 0.97
PDLIM5-202ENST00000318007 C1orf167Q5SNV9 1468 aa21.14■□□□□ 0.97
PDLIM5-202ENST00000318007 HDGFL2Q7Z4V5 671 aaPredicted RBP21.14■□□□□ 0.97
PDLIM5-202ENST00000318007 ANKRD36BQ8N2N9 1353 aa21.13■□□□□ 0.97
PDLIM5-202ENST00000318007 TERF2IPQ9NYB0 399 aa21.13■□□□□ 0.97
PDLIM5-202ENST00000318007 PHF8Q9UPP1 1060 aa21.13■□□□□ 0.97
PDLIM5-202ENST00000318007 ANKARQ7Z5J8 1434 aa21.13■□□□□ 0.97
PDLIM5-202ENST00000318007 ITSN1Q15811 1721 aa21.12■□□□□ 0.97
PDLIM5-202ENST00000318007 FOXO3O43524 673 aa21.12■□□□□ 0.97
PDLIM5-202ENST00000318007 KNSTRNQ9Y448 316 aa21.12■□□□□ 0.97
PDLIM5-202ENST00000318007 KTN1Q86UP2 1357 aaKnown RBP21.12■□□□□ 0.97
PDLIM5-202ENST00000318007 DCCP43146 1447 aa21.12■□□□□ 0.97
PDLIM5-202ENST00000318007 PLEKHG5O94827 1062 aa21.11■□□□□ 0.97
PDLIM5-202ENST00000318007 SLAIN2Q9P270 581 aa21.11■□□□□ 0.97
PDLIM5-202ENST00000318007 SCAF1Q9H7N4 1312 aaKnown RBP21.11■□□□□ 0.97
PDLIM5-202ENST00000318007 NINLQ9Y2I6 1382 aa21.1■□□□□ 0.97
PDLIM5-202ENST00000318007 PER1O15534 1290 aaPredicted RBP21.1■□□□□ 0.97
PDLIM5-202ENST00000318007 PAK3O75914 559 aaPredicted RBP21.08■□□□□ 0.97
PDLIM5-202ENST00000318007 PIP4K2BP78356 416 aa21.08■□□□□ 0.97
PDLIM5-202ENST00000318007 PLEKHG3A1L390 1219 aa21.07■□□□□ 0.96
PDLIM5-202ENST00000318007 CPSF1Q10570 1443 aaKnown RBP21.06■□□□□ 0.96
PDLIM5-202ENST00000318007 PSME1Q06323 249 aa21.06■□□□□ 0.96
PDLIM5-202ENST00000318007 BRINP3Q76B58 766 aa21.06■□□□□ 0.96
PDLIM5-202ENST00000318007 MIER1Q8N108 512 aa21.06■□□□□ 0.96
PDLIM5-202ENST00000318007 ANP32CO43423 234 aa21.05■□□□□ 0.96
PDLIM5-202ENST00000318007 TNNT2P45379 298 aaPredicted RBP21.05■□□□□ 0.96
PDLIM5-202ENST00000318007 NUTM2GQ5VZR2 741 aa21.05■□□□□ 0.96
PDLIM5-202ENST00000318007 GGNBP2Q9H3C7 697 aa21.05■□□□□ 0.96
PDLIM5-202ENST00000318007 LMOD2Q6P5Q4 547 aa21.04■□□□□ 0.96
PDLIM5-202ENST00000318007 ZRANB1Q9UGI0 708 aa21.04■□□□□ 0.96
PDLIM5-202ENST00000318007 AKAP12Q02952 1782 aa21.04■□□□□ 0.96
PDLIM5-202ENST00000318007 USP6P35125 1406 aa21.04■□□□□ 0.96
PDLIM5-202ENST00000318007 UBAP1LF5GYI3 381 aa21.03■□□□□ 0.96
PDLIM5-202ENST00000318007 NME9Q86XW9 330 aa21.03■□□□□ 0.96
PDLIM5-202ENST00000318007 POLR3AO14802 1390 aaPredicted RBP21.03■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms