RNA–Protein interactions for RNA: ENST00000317677.9

CPNE1-201, Transcript of copine 1, humanhuman

TSL 1 (best) BASIC

Gene CPNE1, Length 1,961 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-201ENST00000317677 STAG3Q9UJ98 1225 aa17.59■□□□□ 0.41
CPNE1-201ENST00000317677 CC2D1BQ5T0F9 858 aaKnown RBP17.59■□□□□ 0.41
CPNE1-201ENST00000317677 BRD4O60885 1362 aaPredicted RBP17.58■□□□□ 0.41
CPNE1-201ENST00000317677 CERKQ8TCT0 537 aa17.58■□□□□ 0.4
CPNE1-201ENST00000317677 UBE2Q2Q8WVN8 375 aa17.58■□□□□ 0.4
CPNE1-201ENST00000317677 NCKAP5LQ9HCH0 1330 aa17.57■□□□□ 0.4
CPNE1-201ENST00000317677 PNISRQ8TF01 805 aaKnown RBP17.57■□□□□ 0.4
CPNE1-201ENST00000317677 AMER1Q5JTC6 1135 aaPredicted RBP17.57■□□□□ 0.4
CPNE1-201ENST00000317677 YTHDC2Q9H6S0 1430 aaKnown RBP17.57■□□□□ 0.4
CPNE1-201ENST00000317677 THEMISQ8N1K5 641 aaPredicted RBP17.56■□□□□ 0.4
CPNE1-201ENST00000317677 SLC24A1O60721 1099 aa17.55■□□□□ 0.4
CPNE1-201ENST00000317677 LRPPRCP42704 1394 aaKnown RBP17.55■□□□□ 0.4
CPNE1-201ENST00000317677 STK26Q9P289 416 aa17.54■□□□□ 0.4
CPNE1-201ENST00000317677 TMC1Q8TDI8 760 aa17.53■□□□□ 0.4
CPNE1-201ENST00000317677 CARD14Q9BXL6 1004 aa17.53■□□□□ 0.4
CPNE1-201ENST00000317677 NLRP13Q86W25 1043 aa17.52■□□□□ 0.4
CPNE1-201ENST00000317677 ANKLE2Q86XL3 938 aa17.51■□□□□ 0.39
CPNE1-201ENST00000317677 KNSTRNQ9Y448 316 aa17.51■□□□□ 0.39
CPNE1-201ENST00000317677 NPC1L1Q9UHC9 1359 aa17.5■□□□□ 0.39
CPNE1-201ENST00000317677 SAFB2Q14151 953 aaKnown RBP eCLIP17.49■□□□□ 0.39
CPNE1-201ENST00000317677 DLC1Q96QB1 1528 aa17.49■□□□□ 0.39
CPNE1-201ENST00000317677 TMEM2Q9UHN6 1383 aa17.49■□□□□ 0.39
CPNE1-201ENST00000317677 ZBED9Q6R2W3 1325 aa17.49■□□□□ 0.39
CPNE1-201ENST00000317677 SLC12A5Q9H2X9 1139 aa17.48■□□□□ 0.39
CPNE1-201ENST00000317677 PRAM1Q96QH2 718 aa17.48■□□□□ 0.39
CPNE1-201ENST00000317677 SALL2Q9Y467 1007 aaPredicted RBP17.47■□□□□ 0.39
CPNE1-201ENST00000317677 METP08581 1390 aa17.47■□□□□ 0.39
CPNE1-201ENST00000317677 LTBP4Q8N2S1 1624 aa17.46■□□□□ 0.39
CPNE1-201ENST00000317677 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.46■□□□□ 0.39
CPNE1-201ENST00000317677 EVC2Q86UK5 1308 aa17.46■□□□□ 0.39
CPNE1-201ENST00000317677 KNDC1Q76NI1 1749 aa17.46■□□□□ 0.39
CPNE1-201ENST00000317677 PPP2R1AP30153 589 aa17.46■□□□□ 0.39
CPNE1-201ENST00000317677 PUS7Q96PZ0 661 aaKnown RBP17.46■□□□□ 0.39
CPNE1-201ENST00000317677 CABP2Q9NPB3 220 aa17.46■□□□□ 0.39
CPNE1-201ENST00000317677 PLEKHH1Q9ULM0 1364 aa17.46■□□□□ 0.38
CPNE1-201ENST00000317677 USP32Q8NFA0 1604 aa17.45■□□□□ 0.38
CPNE1-201ENST00000317677 NSD3Q9BZ95 1437 aa17.44■□□□□ 0.38
CPNE1-201ENST00000317677 MINK1Q8N4C8 1332 aaPredicted RBP17.44■□□□□ 0.38
CPNE1-201ENST00000317677 IQSEC2Q5JU85 1478 aa17.44■□□□□ 0.38
CPNE1-201ENST00000317677 ADAMTS13Q76LX8 1427 aa17.44■□□□□ 0.38
CPNE1-201ENST00000317677 ABCC11Q96J66 1382 aa17.43■□□□□ 0.38
CPNE1-201ENST00000317677 ZNF335Q9H4Z2 1342 aaPredicted RBP17.43■□□□□ 0.38
CPNE1-201ENST00000317677 SENP3-EIF4A1A0A087X0R7 540 aa17.43■□□□□ 0.38
CPNE1-201ENST00000317677 LTKP29376 864 aa17.43■□□□□ 0.38
CPNE1-201ENST00000317677 SLIT1O75093 1534 aa17.42■□□□□ 0.38
CPNE1-201ENST00000317677 MED14O60244 1454 aa17.42■□□□□ 0.38
CPNE1-201ENST00000317677 ARHGAP23Q9P227 1491 aa17.42■□□□□ 0.38
CPNE1-201ENST00000317677 NPHP4O75161 1426 aaPredicted RBP17.42■□□□□ 0.38
CPNE1-201ENST00000317677 WAPLQ7Z5K2 1190 aa17.41■□□□□ 0.38
CPNE1-201ENST00000317677 POGKQ9P215 609 aa17.41■□□□□ 0.38
CPNE1-201ENST00000317677 CPS1P31327 1500 aa17.4■□□□□ 0.38
CPNE1-201ENST00000317677 CD163L1Q9NR16 1453 aa17.4■□□□□ 0.38
CPNE1-201ENST00000317677 TECPR2O15040 1411 aa17.4■□□□□ 0.38
CPNE1-201ENST00000317677 ANKRD36BQ8N2N9 1353 aa17.4■□□□□ 0.38
CPNE1-201ENST00000317677 BLMP54132 1417 aaPredicted RBP17.39■□□□□ 0.37
CPNE1-201ENST00000317677 EID1Q9Y6B2 187 aa17.39■□□□□ 0.37
CPNE1-201ENST00000317677 PLEKHG1Q9ULL1 1385 aa17.39■□□□□ 0.37
CPNE1-201ENST00000317677 A0A1W2PP64 1363 aa17.37■□□□□ 0.37
CPNE1-201ENST00000317677 HDGFP51858 240 aaKnown RBP17.37■□□□□ 0.37
CPNE1-201ENST00000317677 SRPK2P78362 688 aaKnown RBP17.37■□□□□ 0.37
CPNE1-201ENST00000317677 INSRP06213 1382 aa17.36■□□□□ 0.37
CPNE1-201ENST00000317677 TXNDC2Q86VQ3 553 aa17.36■□□□□ 0.37
CPNE1-201ENST00000317677 CDK19Q9BWU1 502 aa17.36■□□□□ 0.37
CPNE1-201ENST00000317677 ATAD2Q6PL18 1390 aa17.35■□□□□ 0.37
CPNE1-201ENST00000317677 NINLQ9Y2I6 1382 aa17.35■□□□□ 0.37
CPNE1-201ENST00000317677 NOP58Q9Y2X3 529 aaKnown RBP17.35■□□□□ 0.37
CPNE1-201ENST00000317677 FAM135BQ49AJ0 1406 aa17.35■□□□□ 0.37
CPNE1-201ENST00000317677 PTPRUQ92729 1446 aa17.34■□□□□ 0.37
CPNE1-201ENST00000317677 ROBO2Q9HCK4 1378 aa17.33■□□□□ 0.36
CPNE1-201ENST00000317677 SMG6Q86US8 1419 aaKnown RBP17.33■□□□□ 0.36
CPNE1-201ENST00000317677 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.33■□□□□ 0.36
CPNE1-201ENST00000317677 SHPRHQ149N8 1683 aa17.32■□□□□ 0.36
CPNE1-201ENST00000317677 SIRT1Q96EB6 747 aa17.32■□□□□ 0.36
CPNE1-201ENST00000317677 ADAMTS8Q9UP79 889 aa17.32■□□□□ 0.36
CPNE1-201ENST00000317677 ANKRD26Q9UPS8 1709 aa17.32■□□□□ 0.36
CPNE1-201ENST00000317677 SLC26A8Q96RN1 970 aa17.29■□□□□ 0.36
CPNE1-201ENST00000317677 CGNL1Q0VF96 1302 aa17.29■□□□□ 0.36
CPNE1-201ENST00000317677 UBAP1LF5GYI3 381 aa17.29■□□□□ 0.36
CPNE1-201ENST00000317677 MORC1Q86VD1 984 aa17.29■□□□□ 0.36
CPNE1-201ENST00000317677 KIF20BQ96Q89 1820 aa17.28■□□□□ 0.36
CPNE1-201ENST00000317677 ADGRB2O60241 1585 aa17.28■□□□□ 0.36
CPNE1-201ENST00000317677 CABP1Q9NZU7 370 aa17.28■□□□□ 0.36
CPNE1-201ENST00000317677 NSD2O96028 1365 aa17.28■□□□□ 0.36
CPNE1-201ENST00000317677 WASLO00401 505 aaPredicted RBP17.28■□□□□ 0.36
CPNE1-201ENST00000317677 PPP4R2Q9NY27 417 aa17.28■□□□□ 0.36
CPNE1-201ENST00000317677 POLR3AO14802 1390 aaPredicted RBP17.27■□□□□ 0.36
CPNE1-201ENST00000317677 NUDCQ9Y266 331 aa17.27■□□□□ 0.36
CPNE1-201ENST00000317677 DIP2AQ14689 1571 aa17.27■□□□□ 0.35
CPNE1-201ENST00000317677 ATP7BP35670 1465 aa17.27■□□□□ 0.35
CPNE1-201ENST00000317677 XRN1Q8IZH2 1706 aaKnown RBP17.26■□□□□ 0.35
CPNE1-201ENST00000317677 TNNT2P45379 298 aaPredicted RBP17.26■□□□□ 0.35
CPNE1-201ENST00000317677 TERF2IPQ9NYB0 399 aa17.24■□□□□ 0.35
CPNE1-201ENST00000317677 TBX22Q9Y458 520 aa17.24■□□□□ 0.35
CPNE1-201ENST00000317677 STRCP1A6NGW2 1772 aa17.24■□□□□ 0.35
CPNE1-201ENST00000317677 AKAP12Q02952 1782 aa17.24■□□□□ 0.35
CPNE1-201ENST00000317677 PRR36Q9H6K5 1346 aa17.24■□□□□ 0.35
CPNE1-201ENST00000317677 TOPAZ1Q8N9V7 1692 aa17.24■□□□□ 0.35
CPNE1-201ENST00000317677 TOM1O60784 492 aa17.24■□□□□ 0.35
CPNE1-201ENST00000317677 WDR43Q15061 677 aaKnown RBP eCLIP17.24■□□□□ 0.35
CPNE1-201ENST00000317677 MON2Q7Z3U7 1717 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms