RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 PMFBP1Q8TBY8 1022 aa17.21■□□□□ 0.35
SKA3-202ENST00000314759 RUNDC1Q96C34 613 aa17.21■□□□□ 0.35
SKA3-202ENST00000314759 PHF23Q9BUL5 403 aaPredicted RBP17.21■□□□□ 0.35
SKA3-202ENST00000314759 SLKQ9H2G2 1235 aaPredicted RBP17.21■□□□□ 0.35
SKA3-202ENST00000314759 RRAGDQ9NQL2 400 aaPredicted RBP17.21■□□□□ 0.35
SKA3-202ENST00000314759 SBNO2Q9Y2G9 1366 aa17.19■□□□□ 0.34
SKA3-202ENST00000314759 NSD3Q9BZ95 1437 aa17.19■□□□□ 0.34
SKA3-202ENST00000314759 SHPRHQ149N8 1683 aa17.19■□□□□ 0.34
SKA3-202ENST00000314759 BCL2L13Q9BXK5 485 aa17.19■□□□□ 0.34
SKA3-202ENST00000314759 AAMPQ13685 434 aa17.18■□□□□ 0.34
SKA3-202ENST00000314759 SLC12A5Q9H2X9 1139 aa17.18■□□□□ 0.34
SKA3-202ENST00000314759 ANTXR1Q9H6X2 564 aa17.18■□□□□ 0.34
SKA3-202ENST00000314759 PDZRN3Q9UPQ7 1066 aa17.18■□□□□ 0.34
SKA3-202ENST00000314759 WDR63Q8IWG1 891 aa17.17■□□□□ 0.34
SKA3-202ENST00000314759 UHRF1BP1LA0JNW5 1464 aa17.17■□□□□ 0.34
SKA3-202ENST00000314759 IQSEC2Q5JU85 1478 aa17.17■□□□□ 0.34
SKA3-202ENST00000314759 TBC1D32Q96NH3 1257 aa17.17■□□□□ 0.34
SKA3-202ENST00000314759 ATP7AQ04656 1500 aa17.17■□□□□ 0.34
SKA3-202ENST00000314759 ARAP3Q8WWN8 1544 aa17.16■□□□□ 0.34
SKA3-202ENST00000314759 MYO3AQ8NEV4 1616 aa17.16■□□□□ 0.34
SKA3-202ENST00000314759 ARXQ96QS3 562 aa17.16■□□□□ 0.34
SKA3-202ENST00000314759 NRXN1Q9ULB1 1477 aa17.16■□□□□ 0.34
SKA3-202ENST00000314759 UPF2Q9HAU5 1272 aaKnown RBP17.15■□□□□ 0.34
SKA3-202ENST00000314759 TRAK1Q9UPV9 953 aa17.15■□□□□ 0.34
SKA3-202ENST00000314759 ZMYM3Q14202 1370 aa17.15■□□□□ 0.34
SKA3-202ENST00000314759 MTHFSP49914 203 aa17.14■□□□□ 0.33
SKA3-202ENST00000314759 TBC1D2Q9BYX2 928 aa17.14■□□□□ 0.33
SKA3-202ENST00000314759 INO80Q9ULG1 1556 aaPredicted RBP17.14■□□□□ 0.33
SKA3-202ENST00000314759 MROH1Q8NDA8 1641 aa17.14■□□□□ 0.33
SKA3-202ENST00000314759 KIF1BO60333 1816 aa17.14■□□□□ 0.33
SKA3-202ENST00000314759 IFT172Q9UG01 1749 aa17.13■□□□□ 0.33
SKA3-202ENST00000314759 CCDC27Q2M243 656 aa17.13■□□□□ 0.33
SKA3-202ENST00000314759 RWDD1Q9H446 243 aaPredicted RBP17.13■□□□□ 0.33
SKA3-202ENST00000314759 NOS1P29475 1434 aa17.13■□□□□ 0.33
SKA3-202ENST00000314759 MROH2AA6NES4 1674 aa17.12■□□□□ 0.33
SKA3-202ENST00000314759 FANCAO15360 1455 aa17.11■□□□□ 0.33
SKA3-202ENST00000314759 ZNF518AQ6AHZ1 1483 aa17.11■□□□□ 0.33
SKA3-202ENST00000314759 EFCAB6Q5THR3 1501 aa17.1■□□□□ 0.33
SKA3-202ENST00000314759 CHGAP10645 457 aaKnown RBP17.1■□□□□ 0.33
SKA3-202ENST00000314759 MVPQ14764 893 aaKnown RBP17.1■□□□□ 0.33
SKA3-202ENST00000314759 MYH16Q9H6N6 1097 aa17.09■□□□□ 0.33
SKA3-202ENST00000314759 SETBP1Q9Y6X0 1596 aa17.09■□□□□ 0.33
SKA3-202ENST00000314759 TMEM132EQ6IEE7 984 aa17.09■□□□□ 0.33
SKA3-202ENST00000314759 CFAP53Q96M91 514 aa17.09■□□□□ 0.33
SKA3-202ENST00000314759 C14orf93Q9H972 538 aaKnown RBP17.09■□□□□ 0.33
SKA3-202ENST00000314759 XRCC6P12956 609 aaKnown RBP eCLIP17.07■□□□□ 0.32
SKA3-202ENST00000314759 L1TD1Q5T7N2 865 aaKnown RBP17.07■□□□□ 0.32
SKA3-202ENST00000314759 SPRYD3Q8NCJ5 442 aa17.07■□□□□ 0.32
SKA3-202ENST00000314759 PPRC1Q5VV67 1664 aaKnown RBP17.07■□□□□ 0.32
SKA3-202ENST00000314759 ABCA9Q8IUA7 1624 aa17.07■□□□□ 0.32
SKA3-202ENST00000314759 U2AF1L5P0DN76 240 aaPredicted RBP17.07■□□□□ 0.32
SKA3-202ENST00000314759 U2AF1Q01081 240 aaKnown RBP eCLIP17.07■□□□□ 0.32
SKA3-202ENST00000314759 ZKSCAN2Q63HK3 967 aa17.07■□□□□ 0.32
SKA3-202ENST00000314759 ADGRL1O94910 1474 aa17.06■□□□□ 0.32
SKA3-202ENST00000314759 DZIP1LQ8IYY4 767 aaKnown RBP17.06■□□□□ 0.32
SKA3-202ENST00000314759 ADGRB3O60242 1522 aa17.06■□□□□ 0.32
SKA3-202ENST00000314759 NCBP3Q53F19 620 aaKnown RBP17.06■□□□□ 0.32
SKA3-202ENST00000314759 QRICH2Q9H0J4 1663 aa17.05■□□□□ 0.32
SKA3-202ENST00000314759 FTSJ3Q8IY81 847 aaKnown RBP17.05■□□□□ 0.32
SKA3-202ENST00000314759 PANK2Q9BZ23 570 aa17.05■□□□□ 0.32
SKA3-202ENST00000314759 GZF1Q9H116 711 aaPredicted RBP17.05■□□□□ 0.32
SKA3-202ENST00000314759 ZC3H13Q5T200 1668 aaKnown RBP17.05■□□□□ 0.32
SKA3-202ENST00000314759 ADGRB1O14514 1584 aa17.05■□□□□ 0.32
SKA3-202ENST00000314759 TSR2Q969E8 191 aaKnown RBP17.04■□□□□ 0.32
SKA3-202ENST00000314759 USP32Q8NFA0 1604 aa17.04■□□□□ 0.32
SKA3-202ENST00000314759 C22orf23Q9BZE7 217 aa17.03■□□□□ 0.32
SKA3-202ENST00000314759 LMTK2Q8IWU2 1503 aa17.02■□□□□ 0.32
SKA3-202ENST00000314759 TRIM27P14373 513 aa17.02■□□□□ 0.31
SKA3-202ENST00000314759 MCM4P33991 863 aa17.02■□□□□ 0.31
SKA3-202ENST00000314759 MFAP1P55081 439 aaKnown RBP17.01■□□□□ 0.31
SKA3-202ENST00000314759 SMC4Q9NTJ3 1288 aa17.01■□□□□ 0.31
SKA3-202ENST00000314759 CT47B1P0C2W7 299 aaPredicted RBP17.01■□□□□ 0.31
SKA3-202ENST00000314759 EXOSC9Q06265 439 aaKnown RBP17.01■□□□□ 0.31
SKA3-202ENST00000314759 HDAC1Q13547 482 aaPredicted RBP17.01■□□□□ 0.31
SKA3-202ENST00000314759 GOLGA6L3A6NEY3 463 aa17■□□□□ 0.31
SKA3-202ENST00000314759 ANKRD36BQ8N2N9 1353 aa17■□□□□ 0.31
SKA3-202ENST00000314759 FSD2A1L4K1 749 aa17■□□□□ 0.31
SKA3-202ENST00000314759 ADGRB2O60241 1585 aa17■□□□□ 0.31
SKA3-202ENST00000314759 SSH1Q8WYL5 1049 aa17■□□□□ 0.31
SKA3-202ENST00000314759 NAP1L5Q96NT1 182 aaPredicted RBP17■□□□□ 0.31
SKA3-202ENST00000314759 NPATQ14207 1427 aa16.99■□□□□ 0.31
SKA3-202ENST00000314759 PPLO60437 1756 aa16.99■□□□□ 0.31
SKA3-202ENST00000314759 NSD2O96028 1365 aa16.99■□□□□ 0.31
SKA3-202ENST00000314759 PLEKHF1Q96S99 279 aa16.99■□□□□ 0.31
SKA3-202ENST00000314759 KIDINS220Q9ULH0 1771 aa16.99■□□□□ 0.31
SKA3-202ENST00000314759 EVC2Q86UK5 1308 aa16.98■□□□□ 0.31
SKA3-202ENST00000314759 ITPRIPQ8IWB1 547 aa16.98■□□□□ 0.31
SKA3-202ENST00000314759 CHMP5Q9NZZ3 219 aa16.98■□□□□ 0.31
SKA3-202ENST00000314759 CFAP65Q6ZU64 1925 aaKnown RBP16.98■□□□□ 0.31
SKA3-202ENST00000314759 ATF7IPQ6VMQ6 1270 aa16.98■□□□□ 0.31
SKA3-202ENST00000314759 PUS7Q96PZ0 661 aaKnown RBP16.98■□□□□ 0.31
SKA3-202ENST00000314759 DDX19BQ9UMR2 479 aa16.98■□□□□ 0.31
SKA3-202ENST00000314759 TRIM35Q9UPQ4 493 aa16.98■□□□□ 0.31
SKA3-202ENST00000314759 CD109Q6YHK3 1445 aa16.98■□□□□ 0.31
SKA3-202ENST00000314759 CABP2Q9NPB3 220 aa16.97■□□□□ 0.31
SKA3-202ENST00000314759 TMPOP42166 694 aaKnown RBP16.97■□□□□ 0.31
SKA3-202ENST00000314759 SMC5Q8IY18 1101 aa16.97■□□□□ 0.31
SKA3-202ENST00000314759 TULP4Q9NRJ4 1543 aa16.96■□□□□ 0.31
SKA3-202ENST00000314759 PNNQ9H307 717 aaKnown RBP16.96■□□□□ 0.31
SKA3-202ENST00000314759 NOB1Q9ULX3 412 aaKnown RBP16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms