RNA–Protein interactions for RNA: ENST00000307859.4

TRIM40-205, Transcript of tripartite motif containing 40, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TRIM40, Length 1,640 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40-205ENST00000307859 FAM135BQ49AJ0 1406 aa16.22■□□□□ 0.19
TRIM40-205ENST00000307859 TULP4Q9NRJ4 1543 aa16.22■□□□□ 0.19
TRIM40-205ENST00000307859 KNDC1Q76NI1 1749 aa16.21■□□□□ 0.19
TRIM40-205ENST00000307859 YTHDC2Q9H6S0 1430 aaKnown RBP16.21■□□□□ 0.19
TRIM40-205ENST00000307859 DLC1Q96QB1 1528 aa16.2■□□□□ 0.18
TRIM40-205ENST00000307859 MYBBP1AQ9BQG0 1328 aaKnown RBP16.2■□□□□ 0.18
TRIM40-205ENST00000307859 BRD4O60885 1362 aaPredicted RBP16.19■□□□□ 0.18
TRIM40-205ENST00000307859 STRCP1A6NGW2 1772 aa16.19■□□□□ 0.18
TRIM40-205ENST00000307859 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.18■□□□□ 0.18
TRIM40-205ENST00000307859 NPC1L1Q9UHC9 1359 aa16.17■□□□□ 0.18
TRIM40-205ENST00000307859 USP32Q8NFA0 1604 aa16.17■□□□□ 0.18
TRIM40-205ENST00000307859 TMEM2Q9UHN6 1383 aa16.17■□□□□ 0.18
TRIM40-205ENST00000307859 PUS7Q96PZ0 661 aaKnown RBP16.16■□□□□ 0.18
TRIM40-205ENST00000307859 GTF3C3Q9Y5Q9 886 aa16.16■□□□□ 0.18
TRIM40-205ENST00000307859 UPF1Q92900 1129 aaKnown RBP eCLIP16.16■□□□□ 0.18
TRIM40-205ENST00000307859 SLIT1O75093 1534 aa16.15■□□□□ 0.18
TRIM40-205ENST00000307859 CNGB1Q14028 1251 aaPredicted RBP16.14■□□□□ 0.17
TRIM40-205ENST00000307859 LRPPRCP42704 1394 aaKnown RBP16.14■□□□□ 0.17
TRIM40-205ENST00000307859 HDGFP51858 240 aaKnown RBP16.13■□□□□ 0.17
TRIM40-205ENST00000307859 AMER1Q5JTC6 1135 aaPredicted RBP16.13■□□□□ 0.17
TRIM40-205ENST00000307859 NLRP13Q86W25 1043 aa16.13■□□□□ 0.17
TRIM40-205ENST00000307859 ARHGAP23Q9P227 1491 aa16.13■□□□□ 0.17
TRIM40-205ENST00000307859 EVC2Q86UK5 1308 aa16.13■□□□□ 0.17
TRIM40-205ENST00000307859 HNRNPUQ00839 825 aaKnown RBP eCLIP16.12■□□□□ 0.17
TRIM40-205ENST00000307859 FAM9BQ8IZU0 186 aa16.12■□□□□ 0.17
TRIM40-205ENST00000307859 KNSTRNQ9Y448 316 aa16.12■□□□□ 0.17
TRIM40-205ENST00000307859 CC2D1BQ5T0F9 858 aaKnown RBP16.11■□□□□ 0.17
TRIM40-205ENST00000307859 TMC1Q8TDI8 760 aa16.11■□□□□ 0.17
TRIM40-205ENST00000307859 PNISRQ8TF01 805 aaKnown RBP16.11■□□□□ 0.17
TRIM40-205ENST00000307859 STK26Q9P289 416 aa16.11■□□□□ 0.17
TRIM40-205ENST00000307859 ABCC11Q96J66 1382 aa16.11■□□□□ 0.17
TRIM40-205ENST00000307859 TECPR2O15040 1411 aa16.1■□□□□ 0.17
TRIM40-205ENST00000307859 PLEKHG1Q9ULL1 1385 aa16.09■□□□□ 0.17
TRIM40-205ENST00000307859 NINLQ9Y2I6 1382 aa16.09■□□□□ 0.17
TRIM40-205ENST00000307859 ADAMTS13Q76LX8 1427 aa16.08■□□□□ 0.17
TRIM40-205ENST00000307859 METP08581 1390 aa16.08■□□□□ 0.16
TRIM40-205ENST00000307859 PRAM1Q96QH2 718 aa16.08■□□□□ 0.16
TRIM40-205ENST00000307859 CARD14Q9BXL6 1004 aa16.07■□□□□ 0.16
TRIM40-205ENST00000307859 ZBED9Q6R2W3 1325 aa16.07■□□□□ 0.16
TRIM40-205ENST00000307859 ANKRD26Q9UPS8 1709 aa16.06■□□□□ 0.16
TRIM40-205ENST00000307859 DIP2AQ14689 1571 aa16.06■□□□□ 0.16
TRIM40-205ENST00000307859 POGKQ9P215 609 aa16.05■□□□□ 0.16
TRIM40-205ENST00000307859 XIRP1Q702N8 1843 aaKnown RBP16.05■□□□□ 0.16
TRIM40-205ENST00000307859 INSRP06213 1382 aa16.05■□□□□ 0.16
TRIM40-205ENST00000307859 ATAD2Q6PL18 1390 aa16.05■□□□□ 0.16
TRIM40-205ENST00000307859 ANKRD36BQ8N2N9 1353 aa16.05■□□□□ 0.16
TRIM40-205ENST00000307859 JCADQ9P266 1359 aa16.05■□□□□ 0.16
TRIM40-205ENST00000307859 NSD3Q9BZ95 1437 aa16.05■□□□□ 0.16
TRIM40-205ENST00000307859 SAFB2Q14151 953 aaKnown RBP eCLIP16.04■□□□□ 0.16
TRIM40-205ENST00000307859 ZNF772Q68DY9 489 aaPredicted RBP16.04■□□□□ 0.16
TRIM40-205ENST00000307859 SIRT1Q96EB6 747 aa16.04■□□□□ 0.16
TRIM40-205ENST00000307859 SLC12A5Q9H2X9 1139 aa16.04■□□□□ 0.16
TRIM40-205ENST00000307859 LTKP29376 864 aa16.03■□□□□ 0.16
TRIM40-205ENST00000307859 MINK1Q8N4C8 1332 aaPredicted RBP16.03■□□□□ 0.16
TRIM40-205ENST00000307859 ADGRB2O60241 1585 aa16.03■□□□□ 0.16
TRIM40-205ENST00000307859 PPP2R1AP30153 589 aa16.02■□□□□ 0.16
TRIM40-205ENST00000307859 CABP2Q9NPB3 220 aa16.02■□□□□ 0.16
TRIM40-205ENST00000307859 PLEKHH1Q9ULM0 1364 aa16.02■□□□□ 0.16
TRIM40-205ENST00000307859 ROBO1Q9Y6N7 1651 aa16.02■□□□□ 0.15
TRIM40-205ENST00000307859 KIF20BQ96Q89 1820 aa16.02■□□□□ 0.15
TRIM40-205ENST00000307859 TMEM94Q12767 1356 aa16.01■□□□□ 0.15
TRIM40-205ENST00000307859 TXNDC2Q86VQ3 553 aa16.01■□□□□ 0.15
TRIM40-205ENST00000307859 CD163L1Q9NR16 1453 aa16■□□□□ 0.15
TRIM40-205ENST00000307859 EID1Q9Y6B2 187 aa16■□□□□ 0.15
TRIM40-205ENST00000307859 XRN1Q8IZH2 1706 aaKnown RBP15.99■□□□□ 0.15
TRIM40-205ENST00000307859 BLMP54132 1417 aaPredicted RBP15.99■□□□□ 0.15
TRIM40-205ENST00000307859 NSD2O96028 1365 aa15.99■□□□□ 0.15
TRIM40-205ENST00000307859 SRPK2P78362 688 aaKnown RBP15.99■□□□□ 0.15
TRIM40-205ENST00000307859 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.99■□□□□ 0.15
TRIM40-205ENST00000307859 CDK12Q9NYV4 1490 aaPredicted RBP15.99■□□□□ 0.15
TRIM40-205ENST00000307859 SPATA31A6Q5VVP1 1343 aa15.98■□□□□ 0.15
TRIM40-205ENST00000307859 WAPLQ7Z5K2 1190 aa15.98■□□□□ 0.15
TRIM40-205ENST00000307859 AKAP12Q02952 1782 aa15.98■□□□□ 0.15
TRIM40-205ENST00000307859 A0A1W2PP64 1363 aa15.98■□□□□ 0.15
TRIM40-205ENST00000307859 KCNA6P17658 529 aa15.97■□□□□ 0.15
TRIM40-205ENST00000307859 ATP7BP35670 1465 aa15.97■□□□□ 0.15
TRIM40-205ENST00000307859 ITSN1Q15811 1721 aa15.97■□□□□ 0.15
TRIM40-205ENST00000307859 MON2Q7Z3U7 1717 aa15.97■□□□□ 0.15
TRIM40-205ENST00000307859 CDK19Q9BWU1 502 aa15.97■□□□□ 0.15
TRIM40-205ENST00000307859 TOPAZ1Q8N9V7 1692 aa15.96■□□□□ 0.15
TRIM40-205ENST00000307859 PTPRUQ92729 1446 aa15.96■□□□□ 0.15
TRIM40-205ENST00000307859 CGNL1Q0VF96 1302 aa15.96■□□□□ 0.15
TRIM40-205ENST00000307859 BCANQ96GW7 911 aa15.96■□□□□ 0.15
TRIM40-205ENST00000307859 SHPRHQ149N8 1683 aa15.96■□□□□ 0.15
TRIM40-205ENST00000307859 ROBO2Q9HCK4 1378 aa15.96■□□□□ 0.14
TRIM40-205ENST00000307859 RXRBP28702 533 aa15.95■□□□□ 0.14
TRIM40-205ENST00000307859 TBX22Q9Y458 520 aa15.94■□□□□ 0.14
TRIM40-205ENST00000307859 PTCH1Q13635 1447 aa15.94■□□□□ 0.14
TRIM40-205ENST00000307859 PROSER2Q86WR7 435 aaPredicted RBP15.94■□□□□ 0.14
TRIM40-205ENST00000307859 CHD2O14647 1828 aaKnown RBP15.93■□□□□ 0.14
TRIM40-205ENST00000307859 PHLPP1O60346 1717 aa15.93■□□□□ 0.14
TRIM40-205ENST00000307859 CDC42BPGQ6DT37 1551 aa15.93■□□□□ 0.14
TRIM40-205ENST00000307859 MEX3CQ5U5Q3 659 aaKnown RBP15.93■□□□□ 0.14
TRIM40-205ENST00000307859 TERF2IPQ9NYB0 399 aa15.93■□□□□ 0.14
TRIM40-205ENST00000307859 SLAIN2Q9P270 581 aa15.93■□□□□ 0.14
TRIM40-205ENST00000307859 LRP6O75581 1613 aa15.92■□□□□ 0.14
TRIM40-205ENST00000307859 WASLO00401 505 aaPredicted RBP15.92■□□□□ 0.14
TRIM40-205ENST00000307859 POLR3AO14802 1390 aaPredicted RBP15.92■□□□□ 0.14
TRIM40-205ENST00000307859 MSH6P52701 1360 aa15.92■□□□□ 0.14
TRIM40-205ENST00000307859 SMG6Q86US8 1419 aaKnown RBP15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms