RNA–Protein interactions for RNA: ENST00000302085.8

SMAD1-201, Transcript of SMAD family member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMAD1, Length 1,966 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD1-201ENST00000302085 PPP2R1AP30153 589 aa30.09■■■□□ 2.41
SMAD1-201ENST00000302085 WAPLQ7Z5K2 1190 aa30.06■■■□□ 2.4
SMAD1-201ENST00000302085 BCANQ96GW7 911 aa30.05■■■□□ 2.4
SMAD1-201ENST00000302085 SRPK2P78362 688 aaKnown RBP30.04■■■□□ 2.4
SMAD1-201ENST00000302085 TXNDC2Q86VQ3 553 aa30.04■■■□□ 2.4
SMAD1-201ENST00000302085 PLEKHH1Q9ULM0 1364 aa30.03■■■□□ 2.4
SMAD1-201ENST00000302085 NSD3Q9BZ95 1437 aa30.03■■■□□ 2.4
SMAD1-201ENST00000302085 PLEKHG1Q9ULL1 1385 aa30.02■■■□□ 2.4
SMAD1-201ENST00000302085 ADAMTS13Q76LX8 1427 aa30.02■■■□□ 2.4
SMAD1-201ENST00000302085 CDK19Q9BWU1 502 aa30.01■■■□□ 2.39
SMAD1-201ENST00000302085 ARHGAP23Q9P227 1491 aa30■■■□□ 2.39
SMAD1-201ENST00000302085 SLIT1O75093 1534 aa30■■■□□ 2.39
SMAD1-201ENST00000302085 ANKRD36BQ8N2N9 1353 aa29.99■■■□□ 2.39
SMAD1-201ENST00000302085 SIRT1Q96EB6 747 aa29.99■■■□□ 2.39
SMAD1-201ENST00000302085 EID1Q9Y6B2 187 aa29.99■■■□□ 2.39
SMAD1-201ENST00000302085 THEMISQ8N1K5 641 aaPredicted RBP29.98■■■□□ 2.39
SMAD1-201ENST00000302085 RIMS1Q86UR5 1692 aaKnown RBP29.98■■■□□ 2.39
SMAD1-201ENST00000302085 ATAD2Q6PL18 1390 aa29.97■■■□□ 2.39
SMAD1-201ENST00000302085 NINLQ9Y2I6 1382 aa29.97■■■□□ 2.39
SMAD1-201ENST00000302085 TECPR2O15040 1411 aa29.96■■■□□ 2.39
SMAD1-201ENST00000302085 MED14O60244 1454 aa29.94■■■□□ 2.38
SMAD1-201ENST00000302085 KNDC1Q76NI1 1749 aa29.94■■■□□ 2.38
SMAD1-201ENST00000302085 FAM135BQ49AJ0 1406 aa29.93■■■□□ 2.38
SMAD1-201ENST00000302085 ADAMTSL3P82987 1691 aa29.93■■■□□ 2.38
SMAD1-201ENST00000302085 USP32Q8NFA0 1604 aa29.93■■■□□ 2.38
SMAD1-201ENST00000302085 SENP3-EIF4A1A0A087X0R7 540 aa29.92■■■□□ 2.38
SMAD1-201ENST00000302085 INSRP06213 1382 aa29.91■■■□□ 2.38
SMAD1-201ENST00000302085 CGNL1Q0VF96 1302 aa29.91■■■□□ 2.38
SMAD1-201ENST00000302085 SLC26A8Q96RN1 970 aa29.9■■■□□ 2.38
SMAD1-201ENST00000302085 CPS1P31327 1500 aa29.9■■■□□ 2.38
SMAD1-201ENST00000302085 A0A1W2PP64 1363 aa29.9■■■□□ 2.38
SMAD1-201ENST00000302085 MORC1Q86VD1 984 aa29.89■■■□□ 2.38
SMAD1-201ENST00000302085 SUPT16HQ9Y5B9 1047 aaKnown RBP29.88■■■□□ 2.37
SMAD1-201ENST00000302085 CD163L1Q9NR16 1453 aa29.88■■■□□ 2.37
SMAD1-201ENST00000302085 ROBO2Q9HCK4 1378 aa29.87■■■□□ 2.37
SMAD1-201ENST00000302085 WASLO00401 505 aaPredicted RBP29.86■■■□□ 2.37
SMAD1-201ENST00000302085 TERF2IPQ9NYB0 399 aa29.86■■■□□ 2.37
SMAD1-201ENST00000302085 CABP1Q9NZU7 370 aa29.86■■■□□ 2.37
SMAD1-201ENST00000302085 ADAMTS8Q9UP79 889 aa29.86■■■□□ 2.37
SMAD1-201ENST00000302085 TBX22Q9Y458 520 aa29.86■■■□□ 2.37
SMAD1-201ENST00000302085 BLMP54132 1417 aaPredicted RBP29.86■■■□□ 2.37
SMAD1-201ENST00000302085 CEP170BQ9Y4F5 1589 aaPredicted RBP29.85■■■□□ 2.37
SMAD1-201ENST00000302085 PTPRUQ92729 1446 aa29.84■■■□□ 2.37
SMAD1-201ENST00000302085 NSD2O96028 1365 aa29.82■■■□□ 2.36
SMAD1-201ENST00000302085 WDR43Q15061 677 aaKnown RBP eCLIP29.81■■■□□ 2.36
SMAD1-201ENST00000302085 FKBP8Q14318 412 aa29.8■■■□□ 2.36
SMAD1-201ENST00000302085 SMG6Q86US8 1419 aaKnown RBP29.8■■■□□ 2.36
SMAD1-201ENST00000302085 TNNT2P45379 298 aaPredicted RBP29.79■■■□□ 2.36
SMAD1-201ENST00000302085 HDGFL2Q7Z4V5 671 aaPredicted RBP29.79■■■□□ 2.36
SMAD1-201ENST00000302085 AMOTL2Q9Y2J4 779 aa29.77■■■□□ 2.36
SMAD1-201ENST00000302085 POLR3AO14802 1390 aaPredicted RBP29.76■■■□□ 2.36
SMAD1-201ENST00000302085 NEFLP07196 543 aa29.75■■■□□ 2.35
SMAD1-201ENST00000302085 NUDT16Q96DE0 195 aaKnown RBP29.75■■■□□ 2.35
SMAD1-201ENST00000302085 NUDCQ9Y266 331 aa29.75■■■□□ 2.35
SMAD1-201ENST00000302085 SALL2Q9Y467 1007 aaPredicted RBP29.75■■■□□ 2.35
SMAD1-201ENST00000302085 FYB1O15117 783 aa29.74■■■□□ 2.35
SMAD1-201ENST00000302085 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.74■■■□□ 2.35
SMAD1-201ENST00000302085 DIP2AQ14689 1571 aa29.74■■■□□ 2.35
SMAD1-201ENST00000302085 ATP7BP35670 1465 aa29.73■■■□□ 2.35
SMAD1-201ENST00000302085 GGNBP2Q9H3C7 697 aa29.72■■■□□ 2.35
SMAD1-201ENST00000302085 ZNF142P52746 1687 aaPredicted RBP29.72■■■□□ 2.35
SMAD1-201ENST00000302085 SETD1BQ9UPS6 1966 aaKnown RBP29.72■■■□□ 2.35
SMAD1-201ENST00000302085 PPIP5K1Q6PFW1 1433 aa29.71■■■□□ 2.35
SMAD1-201ENST00000302085 MTHFSP49914 203 aa29.7■■■□□ 2.34
SMAD1-201ENST00000302085 CCDC61Q9Y6R9 512 aa29.7■■■□□ 2.34
SMAD1-201ENST00000302085 NCKAP5LQ9HCH0 1330 aa29.69■■■□□ 2.34
SMAD1-201ENST00000302085 ANKLE2Q86XL3 938 aa29.69■■■□□ 2.34
SMAD1-201ENST00000302085 ADGRB2O60241 1585 aa29.68■■■□□ 2.34
SMAD1-201ENST00000302085 CPSF1Q10570 1443 aaKnown RBP29.68■■■□□ 2.34
SMAD1-201ENST00000302085 PRR36Q9H6K5 1346 aa29.68■■■□□ 2.34
SMAD1-201ENST00000302085 PTCH1Q13635 1447 aa29.66■■■□□ 2.34
SMAD1-201ENST00000302085 PDE3BQ13370 1112 aa29.66■■■□□ 2.34
SMAD1-201ENST00000302085 ANKRD26Q9UPS8 1709 aa29.64■■■□□ 2.33
SMAD1-201ENST00000302085 SUGP2Q8IX01 1082 aaKnown RBP eCLIP29.63■■■□□ 2.33
SMAD1-201ENST00000302085 PIK3R4Q99570 1358 aa29.62■■■□□ 2.33
SMAD1-201ENST00000302085 XRN1Q8IZH2 1706 aaKnown RBP29.62■■■□□ 2.33
SMAD1-201ENST00000302085 CCDC146Q8IYE0 955 aa29.61■■■□□ 2.33
SMAD1-201ENST00000302085 CDC42BPGQ6DT37 1551 aa29.61■■■□□ 2.33
SMAD1-201ENST00000302085 SHPRHQ149N8 1683 aa29.61■■■□□ 2.33
SMAD1-201ENST00000302085 CFAP53Q96M91 514 aa29.61■■■□□ 2.33
SMAD1-201ENST00000302085 KIF20BQ96Q89 1820 aa29.6■■■□□ 2.33
SMAD1-201ENST00000302085 KCNA6P17658 529 aa29.59■■■□□ 2.33
SMAD1-201ENST00000302085 CDCA7LQ96GN5 454 aa29.59■■■□□ 2.33
SMAD1-201ENST00000302085 EDC4Q6P2E9 1401 aaKnown RBP29.59■■■□□ 2.33
SMAD1-201ENST00000302085 IRX6P78412 446 aaPredicted RBP29.57■■■□□ 2.32
SMAD1-201ENST00000302085 ZNF692Q9BU19 519 aaPredicted RBP29.55■■■□□ 2.32
SMAD1-201ENST00000302085 PLEKHG3A1L390 1219 aa29.55■■■□□ 2.32
SMAD1-201ENST00000302085 NUTM2FA1L443 756 aa29.55■■■□□ 2.32
SMAD1-201ENST00000302085 APAF1O14727 1248 aa29.53■■■□□ 2.32
SMAD1-201ENST00000302085 AKAP12Q02952 1782 aa29.53■■■□□ 2.32
SMAD1-201ENST00000302085 ZNF521Q96K83 1311 aa29.53■■■□□ 2.32
SMAD1-201ENST00000302085 MON2Q7Z3U7 1717 aa29.53■■■□□ 2.32
SMAD1-201ENST00000302085 TOPAZ1Q8N9V7 1692 aa29.52■■■□□ 2.32
SMAD1-201ENST00000302085 NME9Q86XW9 330 aa29.52■■■□□ 2.32
SMAD1-201ENST00000302085 RNF123Q5XPI4 1314 aa29.51■■■□□ 2.32
SMAD1-201ENST00000302085 ITSN1Q15811 1721 aa29.5■■■□□ 2.31
SMAD1-201ENST00000302085 ZRANB1Q9UGI0 708 aa29.49■■■□□ 2.31
SMAD1-201ENST00000302085 ACEP12821 1306 aa29.49■■■□□ 2.31
SMAD1-201ENST00000302085 CHD2O14647 1828 aaKnown RBP29.49■■■□□ 2.31
SMAD1-201ENST00000302085 NPHP4O75161 1426 aaPredicted RBP29.48■■■□□ 2.31
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms