RNA–Protein interactions for RNA: ENST00000299866.12

TVP23A-201, Transcript of trans-golgi network vesicle protein 23 homolog A, humanhuman

APPRIS P1 TSL 2 BASIC

Gene TVP23A, Length 3,360 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TVP23A-201ENST00000299866 SCAF11Q99590 1463 aaKnown RBP16.35■□□□□ 0.21
TVP23A-201ENST00000299866 ITPRIPQ8IWB1 547 aa16.35■□□□□ 0.21
TVP23A-201ENST00000299866 PDCL3Q9H2J4 239 aa16.34■□□□□ 0.21
TVP23A-201ENST00000299866 ARHGEF5Q12774 1597 aa16.34■□□□□ 0.21
TVP23A-201ENST00000299866 NASPP49321 788 aaPredicted RBP16.32■□□□□ 0.2
TVP23A-201ENST00000299866 SMC4Q9NTJ3 1288 aa16.32■□□□□ 0.2
TVP23A-201ENST00000299866 WDR63Q8IWG1 891 aa16.32■□□□□ 0.2
TVP23A-201ENST00000299866 ANP32BQ92688 251 aaKnown RBP16.32■□□□□ 0.2
TVP23A-201ENST00000299866 TSR2Q969E8 191 aaKnown RBP16.32■□□□□ 0.2
TVP23A-201ENST00000299866 DDIT3P35638 169 aa16.32■□□□□ 0.2
TVP23A-201ENST00000299866 SKOR2Q2VWA4 1001 aaPredicted RBP16.32■□□□□ 0.2
TVP23A-201ENST00000299866 SAMD9LQ8IVG5 1584 aa16.31■□□□□ 0.2
TVP23A-201ENST00000299866 RAB3GAP1Q15042 981 aa16.31■□□□□ 0.2
TVP23A-201ENST00000299866 CFAP70Q5T0N1 1121 aa16.31■□□□□ 0.2
TVP23A-201ENST00000299866 LNPKQ9C0E8 428 aa16.31■□□□□ 0.2
TVP23A-201ENST00000299866 MSNP26038 577 aaKnown RBP16.3■□□□□ 0.2
TVP23A-201ENST00000299866 CCDC173Q0VFZ6 552 aa16.3■□□□□ 0.2
TVP23A-201ENST00000299866 SMC5Q8IY18 1101 aa16.3■□□□□ 0.2
TVP23A-201ENST00000299866 PLXNC1O60486 1568 aa16.3■□□□□ 0.2
TVP23A-201ENST00000299866 POLR3AO14802 1390 aaPredicted RBP16.3■□□□□ 0.2
TVP23A-201ENST00000299866 ZSCAN30Q86W11 494 aa16.3■□□□□ 0.2
TVP23A-201ENST00000299866 SYCP2Q9BX26 1530 aa16.29■□□□□ 0.2
TVP23A-201ENST00000299866 RNF17Q9BXT8 1623 aaKnown RBP16.29■□□□□ 0.2
TVP23A-201ENST00000299866 SSFA2P28290 1259 aa16.29■□□□□ 0.2
TVP23A-201ENST00000299866 ARID3AQ99856 593 aa16.29■□□□□ 0.2
TVP23A-201ENST00000299866 CD2BP2O95400 341 aaKnown RBP16.29■□□□□ 0.2
TVP23A-201ENST00000299866 NCLP19338 710 aaKnown RBP16.29■□□□□ 0.2
TVP23A-201ENST00000299866 SNX21Q969T3 373 aa16.29■□□□□ 0.2
TVP23A-201ENST00000299866 FAM13BQ9NYF5 915 aa16.29■□□□□ 0.2
TVP23A-201ENST00000299866 DDX49Q9Y6V7 483 aaKnown RBP16.29■□□□□ 0.2
TVP23A-201ENST00000299866 MRC2Q9UBG0 1479 aa16.29■□□□□ 0.2
TVP23A-201ENST00000299866 TRIM27P14373 513 aa16.28■□□□□ 0.2
TVP23A-201ENST00000299866 MTHFSP49914 203 aa16.28■□□□□ 0.2
TVP23A-201ENST00000299866 CIZ1Q9ULV3 898 aaPredicted RBP16.28■□□□□ 0.2
TVP23A-201ENST00000299866 IFT140Q96RY7 1462 aa16.28■□□□□ 0.2
TVP23A-201ENST00000299866 ABCA8O94911 1581 aa16.28■□□□□ 0.2
TVP23A-201ENST00000299866 RBM42Q9BTD8 480 aaKnown RBP16.28■□□□□ 0.2
TVP23A-201ENST00000299866 RBM25P49756 843 aaKnown RBP16.27■□□□□ 0.2
TVP23A-201ENST00000299866 R3HCC1Q9Y3T6 440 aaKnown RBP16.27■□□□□ 0.2
TVP23A-201ENST00000299866 U2AF1L5P0DN76 240 aaPredicted RBP16.27■□□□□ 0.2
TVP23A-201ENST00000299866 U2AF1Q01081 240 aaKnown RBP eCLIP16.27■□□□□ 0.2
TVP23A-201ENST00000299866 EXOSC9Q06265 439 aaKnown RBP16.27■□□□□ 0.2
TVP23A-201ENST00000299866 HDAC1Q13547 482 aaPredicted RBP16.27■□□□□ 0.2
TVP23A-201ENST00000299866 UNC13BO14795 1591 aa16.27■□□□□ 0.19
TVP23A-201ENST00000299866 GOLGA6L22H0YM25 854 aa16.26■□□□□ 0.19
TVP23A-201ENST00000299866 NCOA3Q9Y6Q9 1424 aa16.26■□□□□ 0.19
TVP23A-201ENST00000299866 OFD1O75665 1012 aa16.26■□□□□ 0.19
TVP23A-201ENST00000299866 PHF23Q9BUL5 403 aaPredicted RBP16.26■□□□□ 0.19
TVP23A-201ENST00000299866 DDX19BQ9UMR2 479 aa16.26■□□□□ 0.19
TVP23A-201ENST00000299866 IQGAP1P46940 1657 aa16.25■□□□□ 0.19
TVP23A-201ENST00000299866 SSH1Q8WYL5 1049 aa16.25■□□□□ 0.19
TVP23A-201ENST00000299866 PPP1R9BQ96SB3 815 aa16.25■□□□□ 0.19
TVP23A-201ENST00000299866 SLC12A5Q9H2X9 1139 aa16.25■□□□□ 0.19
TVP23A-201ENST00000299866 MYOM1P52179 1685 aa16.25■□□□□ 0.19
TVP23A-201ENST00000299866 RIPK4P57078 832 aa16.25■□□□□ 0.19
TVP23A-201ENST00000299866 NOB1Q9ULX3 412 aaKnown RBP16.25■□□□□ 0.19
TVP23A-201ENST00000299866 MADDQ8WXG6 1647 aa16.25■□□□□ 0.19
TVP23A-201ENST00000299866 TMEM57Q8N5G2 664 aa16.24■□□□□ 0.19
TVP23A-201ENST00000299866 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.24■□□□□ 0.19
TVP23A-201ENST00000299866 ATP10AO60312 1499 aa16.24■□□□□ 0.19
TVP23A-201ENST00000299866 SCAPERQ9BY12 1400 aa16.24■□□□□ 0.19
TVP23A-201ENST00000299866 ARHGAP5Q13017 1502 aa16.24■□□□□ 0.19
TVP23A-201ENST00000299866 CFAP53Q96M91 514 aa16.24■□□□□ 0.19
TVP23A-201ENST00000299866 IQGAP3Q86VI3 1631 aa16.23■□□□□ 0.19
TVP23A-201ENST00000299866 PTMSP20962 102 aa16.23■□□□□ 0.19
TVP23A-201ENST00000299866 GAS2L2Q8NHY3 880 aa16.23■□□□□ 0.19
TVP23A-201ENST00000299866 NSD3Q9BZ95 1437 aa16.23■□□□□ 0.19
TVP23A-201ENST00000299866 K7ELQ4 463 aaPredicted RBP16.23■□□□□ 0.19
TVP23A-201ENST00000299866 ATF7IPQ6VMQ6 1270 aa16.23■□□□□ 0.19
TVP23A-201ENST00000299866 KIF2CQ99661 725 aa16.22■□□□□ 0.19
TVP23A-201ENST00000299866 ERVK-7P63135 1459 aa16.22■□□□□ 0.19
TVP23A-201ENST00000299866 XPCQ01831 940 aaPredicted RBP16.21■□□□□ 0.19
TVP23A-201ENST00000299866 MCTP1Q6DN14 999 aa16.21■□□□□ 0.19
TVP23A-201ENST00000299866 CAVIN1Q6NZI2 390 aaKnown RBP16.21■□□□□ 0.19
TVP23A-201ENST00000299866 KDM5AP29375 1690 aaKnown RBP16.21■□□□□ 0.19
TVP23A-201ENST00000299866 CDC42BPBQ9Y5S2 1711 aa16.21■□□□□ 0.19
TVP23A-201ENST00000299866 BAG4O95429 457 aaKnown RBP16.21■□□□□ 0.18
TVP23A-201ENST00000299866 NUCB1Q02818 461 aa16.21■□□□□ 0.18
TVP23A-201ENST00000299866 CCDC27Q2M243 656 aa16.21■□□□□ 0.18
TVP23A-201ENST00000299866 ANKRD45Q5TZF3 282 aa16.21■□□□□ 0.18
TVP23A-201ENST00000299866 CHD1LQ86WJ1 897 aa16.21■□□□□ 0.18
TVP23A-201ENST00000299866 KLHL40Q2TBA0 621 aa16.2■□□□□ 0.18
TVP23A-201ENST00000299866 ADGRF5Q8IZF2 1346 aa16.19■□□□□ 0.18
TVP23A-201ENST00000299866 U2SURPO15042 1029 aaKnown RBP16.19■□□□□ 0.18
TVP23A-201ENST00000299866 CALD1Q05682 793 aaKnown RBP16.19■□□□□ 0.18
TVP23A-201ENST00000299866 ZBTB40Q9NUA8 1239 aa16.19■□□□□ 0.18
TVP23A-201ENST00000299866 TRAK1Q9UPV9 953 aa16.18■□□□□ 0.18
TVP23A-201ENST00000299866 MAST1Q9Y2H9 1570 aa16.18■□□□□ 0.18
TVP23A-201ENST00000299866 IQSEC2Q5JU85 1478 aa16.18■□□□□ 0.18
TVP23A-201ENST00000299866 SLC24A1O60721 1099 aa16.18■□□□□ 0.18
TVP23A-201ENST00000299866 UQCRHLA0A096LP55 91 aa16.17■□□□□ 0.18
TVP23A-201ENST00000299866 UQCRHP07919 91 aa16.17■□□□□ 0.18
TVP23A-201ENST00000299866 TBC1D9Q6ZT07 1266 aa16.17■□□□□ 0.18
TVP23A-201ENST00000299866 STAC3Q96MF2 364 aa16.17■□□□□ 0.18
TVP23A-201ENST00000299866 C1orf115Q9H7X2 142 aa16.17■□□□□ 0.18
TVP23A-201ENST00000299866 DUOX2Q9NRD8 1548 aa16.16■□□□□ 0.18
TVP23A-201ENST00000299866 ZBTB7CA1YPR0 619 aa16.16■□□□□ 0.18
TVP23A-201ENST00000299866 RBSNQ9H1K0 784 aa16.16■□□□□ 0.18
TVP23A-201ENST00000299866 PREX2Q70Z35 1606 aa16.16■□□□□ 0.18
TVP23A-201ENST00000299866 BMP2KLQ5H9B9 411 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms