RNA–Protein interactions for RNA: ENST00000296051.6

HPS3-201, Transcript of HPS3, biogenesis of lysosomal organelles complex 2 subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS3, Length 4,665 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3-201ENST00000296051 MTHFSP49914 203 aa16.51■□□□□ 0.23
HPS3-201ENST00000296051 SKOR2Q2VWA4 1001 aaPredicted RBP16.51■□□□□ 0.23
HPS3-201ENST00000296051 RUNDC1Q96C34 613 aa16.51■□□□□ 0.23
HPS3-201ENST00000296051 RIPK4P57078 832 aa16.51■□□□□ 0.23
HPS3-201ENST00000296051 SF3B2Q13435 895 aaKnown RBP16.5■□□□□ 0.23
HPS3-201ENST00000296051 MCM4P33991 863 aa16.49■□□□□ 0.23
HPS3-201ENST00000296051 NASPP49321 788 aaPredicted RBP16.49■□□□□ 0.23
HPS3-201ENST00000296051 BCL11BQ9C0K0 894 aaPredicted RBP16.49■□□□□ 0.23
HPS3-201ENST00000296051 RILPL2Q969X0 211 aa16.49■□□□□ 0.23
HPS3-201ENST00000296051 PKNOX2Q96KN3 472 aa16.49■□□□□ 0.23
HPS3-201ENST00000296051 C1orf115Q9H7X2 142 aa16.49■□□□□ 0.23
HPS3-201ENST00000296051 ANKRD30BQ9BXX2 1392 aa16.49■□□□□ 0.23
HPS3-201ENST00000296051 SLC52A1Q9NWF4 448 aa16.48■□□□□ 0.23
HPS3-201ENST00000296051 PTPRKQ15262 1439 aa16.48■□□□□ 0.23
HPS3-201ENST00000296051 MIA2Q96PC5 1412 aa16.48■□□□□ 0.23
HPS3-201ENST00000296051 RBM33Q96EV2 1170 aaKnown RBP16.48■□□□□ 0.23
HPS3-201ENST00000296051 C9orf78Q9NZ63 289 aaPredicted RBP16.48■□□□□ 0.23
HPS3-201ENST00000296051 SYAP1Q96A49 352 aaPredicted RBP16.48■□□□□ 0.23
HPS3-201ENST00000296051 CAVIN1Q6NZI2 390 aaKnown RBP16.47■□□□□ 0.23
HPS3-201ENST00000296051 POGZQ7Z3K3 1410 aa16.47■□□□□ 0.23
HPS3-201ENST00000296051 GPATCH3Q96I76 525 aa16.47■□□□□ 0.23
HPS3-201ENST00000296051 PRDM11Q9NQV5 511 aa16.47■□□□□ 0.23
HPS3-201ENST00000296051 EXOSC9Q06265 439 aaKnown RBP16.46■□□□□ 0.23
HPS3-201ENST00000296051 DCAF8L1A6NGE4 600 aa16.46■□□□□ 0.23
HPS3-201ENST00000296051 FAM177BA6PVY3 158 aa16.46■□□□□ 0.23
HPS3-201ENST00000296051 KIAA1107Q9UPP5 1409 aa16.46■□□□□ 0.23
HPS3-201ENST00000296051 PDE3AQ14432 1141 aa16.46■□□□□ 0.22
HPS3-201ENST00000296051 FBXW7Q969H0 707 aa16.45■□□□□ 0.22
HPS3-201ENST00000296051 AIMP1Q12904 312 aaKnown RBP16.45■□□□□ 0.22
HPS3-201ENST00000296051 GRPEL1Q9HAV7 217 aa16.45■□□□□ 0.22
HPS3-201ENST00000296051 TOM1L2Q6ZVM7 507 aa16.45■□□□□ 0.22
HPS3-201ENST00000296051 DDX54Q8TDD1 881 aaKnown RBP16.45■□□□□ 0.22
HPS3-201ENST00000296051 STAC3Q96MF2 364 aa16.45■□□□□ 0.22
HPS3-201ENST00000296051 SLFN5Q08AF3 891 aa16.44■□□□□ 0.22
HPS3-201ENST00000296051 SLC12A5Q9H2X9 1139 aa16.44■□□□□ 0.22
HPS3-201ENST00000296051 ESPNB1AK53 854 aa16.44■□□□□ 0.22
HPS3-201ENST00000296051 RBM42Q9BTD8 480 aaKnown RBP16.44■□□□□ 0.22
HPS3-201ENST00000296051 PCF11O94913 1555 aaKnown RBP16.44■□□□□ 0.22
HPS3-201ENST00000296051 CFAP44Q96MT7 982 aa16.43■□□□□ 0.22
HPS3-201ENST00000296051 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.43■□□□□ 0.22
HPS3-201ENST00000296051 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.42■□□□□ 0.22
HPS3-201ENST00000296051 FKBP5Q13451 457 aaPredicted RBP16.42■□□□□ 0.22
HPS3-201ENST00000296051 IGHDP01880 384 aa16.42■□□□□ 0.22
HPS3-201ENST00000296051 CD109Q6YHK3 1445 aa16.42■□□□□ 0.22
HPS3-201ENST00000296051 CDK13Q14004 1512 aaKnown RBP16.42■□□□□ 0.22
HPS3-201ENST00000296051 RAD21O60216 631 aa16.42■□□□□ 0.22
HPS3-201ENST00000296051 ZC3H6P61129 1189 aaKnown RBP16.41■□□□□ 0.22
HPS3-201ENST00000296051 VPS37DQ86XT2 251 aa16.41■□□□□ 0.22
HPS3-201ENST00000296051 TBC1D2Q9BYX2 928 aa16.41■□□□□ 0.22
HPS3-201ENST00000296051 TSPYL4Q9UJ04 414 aa16.41■□□□□ 0.22
HPS3-201ENST00000296051 DUSP27Q5VZP5 1158 aa16.41■□□□□ 0.22
HPS3-201ENST00000296051 CABP1Q9NZU7 370 aa16.4■□□□□ 0.22
HPS3-201ENST00000296051 PRPF40AO75400 957 aaKnown RBP16.4■□□□□ 0.22
HPS3-201ENST00000296051 UNC13AQ9UPW8 1703 aa16.39■□□□□ 0.22
HPS3-201ENST00000296051 DDX58O95786 925 aaKnown RBP16.39■□□□□ 0.21
HPS3-201ENST00000296051 PANK2Q9BZ23 570 aa16.39■□□□□ 0.21
HPS3-201ENST00000296051 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.38■□□□□ 0.21
HPS3-201ENST00000296051 ANO2Q9NQ90 1003 aa16.38■□□□□ 0.21
HPS3-201ENST00000296051 NOB1Q9ULX3 412 aaKnown RBP16.38■□□□□ 0.21
HPS3-201ENST00000296051 DAPK1P53355 1430 aa16.38■□□□□ 0.21
HPS3-201ENST00000296051 TROQ12816 1431 aaPredicted RBP16.38■□□□□ 0.21
HPS3-201ENST00000296051 WWC1Q8IX03 1113 aa16.37■□□□□ 0.21
HPS3-201ENST00000296051 ADAMTS2O95450 1211 aa16.37■□□□□ 0.21
HPS3-201ENST00000296051 CDK19Q9BWU1 502 aa16.37■□□□□ 0.21
HPS3-201ENST00000296051 DNMBPQ6XZF7 1577 aa16.37■□□□□ 0.21
HPS3-201ENST00000296051 ZNF608Q9ULD9 1512 aaPredicted RBP16.36■□□□□ 0.21
HPS3-201ENST00000296051 FBXO31Q5XUX0 539 aaPredicted RBP16.36■□□□□ 0.21
HPS3-201ENST00000296051 RIC3Q7Z5B4 369 aa16.36■□□□□ 0.21
HPS3-201ENST00000296051 HSP90B1P14625 803 aaKnown RBP16.35■□□□□ 0.21
HPS3-201ENST00000296051 MAP3K1Q13233 1512 aa16.35■□□□□ 0.21
HPS3-201ENST00000296051 VPS53Q5VIR6 699 aa16.35■□□□□ 0.21
HPS3-201ENST00000296051 NUCB2P80303 420 aa16.35■□□□□ 0.21
HPS3-201ENST00000296051 C9orf84Q5VXU9 1444 aa16.34■□□□□ 0.21
HPS3-201ENST00000296051 C8orf34Q49A92 452 aa16.34■□□□□ 0.21
HPS3-201ENST00000296051 GOLGA6L6A8MZA4 724 aa16.34■□□□□ 0.21
HPS3-201ENST00000296051 TATP17735 454 aaPredicted RBP16.34■□□□□ 0.21
HPS3-201ENST00000296051 ZNF592Q92610 1267 aa16.34■□□□□ 0.21
HPS3-201ENST00000296051 SEC24BO95487 1268 aa16.34■□□□□ 0.21
HPS3-201ENST00000296051 KIAA0586Q9BVV6 1533 aa16.34■□□□□ 0.21
HPS3-201ENST00000296051 MVPQ14764 893 aaKnown RBP16.33■□□□□ 0.21
HPS3-201ENST00000296051 KIF16BQ96L93 1317 aa16.33■□□□□ 0.2
HPS3-201ENST00000296051 FOXO3O43524 673 aa16.33■□□□□ 0.2
HPS3-201ENST00000296051 NRDCO43847 1150 aa16.33■□□□□ 0.2
HPS3-201ENST00000296051 REC8O95072 547 aa16.33■□□□□ 0.2
HPS3-201ENST00000296051 A0A0U1RQG5 324 aaPredicted RBP16.33■□□□□ 0.2
HPS3-201ENST00000296051 NOL10Q9BSC4 688 aaKnown RBP16.33■□□□□ 0.2
HPS3-201ENST00000296051 URB2Q14146 1524 aaKnown RBP16.32■□□□□ 0.2
HPS3-201ENST00000296051 PHF14O94880 888 aa16.32■□□□□ 0.2
HPS3-201ENST00000296051 TRIM34Q9BYJ4 488 aa16.32■□□□□ 0.2
HPS3-201ENST00000296051 PLB1Q6P1J6 1458 aa16.32■□□□□ 0.2
HPS3-201ENST00000296051 SAMD1Q6SPF0 538 aaPredicted RBP16.32■□□□□ 0.2
HPS3-201ENST00000296051 ERBINQ96RT1 1412 aa16.32■□□□□ 0.2
HPS3-201ENST00000296051 PLEKHO1Q53GL0 409 aaPredicted RBP16.32■□□□□ 0.2
HPS3-201ENST00000296051 NEK4P51957 841 aa16.31■□□□□ 0.2
HPS3-201ENST00000296051 CDC45O75419 566 aa16.31■□□□□ 0.2
HPS3-201ENST00000296051 ZNF428Q96B54 188 aa16.31■□□□□ 0.2
HPS3-201ENST00000296051 RPRD2Q5VT52 1461 aaKnown RBP16.31■□□□□ 0.2
HPS3-201ENST00000296051 EHBP1L1Q8N3D4 1523 aa16.31■□□□□ 0.2
HPS3-201ENST00000296051 XRCC6P12956 609 aaKnown RBP eCLIP16.31■□□□□ 0.2
HPS3-201ENST00000296051 PTPN23Q9H3S7 1636 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms