RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 ATP6V1DQ9Y5K8 247 aa22.7■■□□□ 1.22
PCDH1-201ENST00000287008 IPO9Q96P70 1041 aaKnown RBP22.7■■□□□ 1.22
PCDH1-201ENST00000287008 RPGRIP1LQ68CZ1 1315 aa22.7■■□□□ 1.22
PCDH1-201ENST00000287008 EHBP1L1Q8N3D4 1523 aa22.69■■□□□ 1.22
PCDH1-201ENST00000287008 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.69■■□□□ 1.22
PCDH1-201ENST00000287008 UBTFL1P0CB47 393 aaPredicted RBP22.69■■□□□ 1.22
PCDH1-201ENST00000287008 ADAMTS8Q9UP79 889 aa22.69■■□□□ 1.22
PCDH1-201ENST00000287008 DNMBPQ6XZF7 1577 aa22.69■■□□□ 1.22
PCDH1-201ENST00000287008 RNF20Q5VTR2 975 aa22.68■■□□□ 1.22
PCDH1-201ENST00000287008 DNAJC5BQ9UF47 199 aa22.68■■□□□ 1.22
PCDH1-201ENST00000287008 WASHC2AQ641Q2 1341 aa22.68■■□□□ 1.22
PCDH1-201ENST00000287008 NEUROD6Q96NK8 337 aa22.68■■□□□ 1.22
PCDH1-201ENST00000287008 FOXD4L5Q5VV16 416 aaPredicted RBP22.68■■□□□ 1.22
PCDH1-201ENST00000287008 CREBRFQ8IUR6 639 aa22.68■■□□□ 1.22
PCDH1-201ENST00000287008 FOXD4L4Q8WXT5 416 aaPredicted RBP22.68■■□□□ 1.22
PCDH1-201ENST00000287008 RTN4Q9NQC3 1192 aaKnown RBP22.68■■□□□ 1.22
PCDH1-201ENST00000287008 PRDM11Q9NQV5 511 aa22.67■■□□□ 1.22
PCDH1-201ENST00000287008 CPLX1O14810 134 aa22.67■■□□□ 1.22
PCDH1-201ENST00000287008 ERC2O15083 957 aa22.67■■□□□ 1.22
PCDH1-201ENST00000287008 RBM42Q9BTD8 480 aaKnown RBP22.67■■□□□ 1.22
PCDH1-201ENST00000287008 CNTLNQ9NXG0 1405 aa22.66■■□□□ 1.22
PCDH1-201ENST00000287008 ANKRD30BQ9BXX2 1392 aa22.66■■□□□ 1.22
PCDH1-201ENST00000287008 CCDC30Q5VVM6 783 aa22.66■■□□□ 1.22
PCDH1-201ENST00000287008 TOM1L2Q6ZVM7 507 aa22.66■■□□□ 1.22
PCDH1-201ENST00000287008 SMG6Q86US8 1419 aaKnown RBP22.66■■□□□ 1.22
PCDH1-201ENST00000287008 TOP2BQ02880 1626 aa22.66■■□□□ 1.22
PCDH1-201ENST00000287008 BRD4O60885 1362 aaPredicted RBP22.66■■□□□ 1.22
PCDH1-201ENST00000287008 ANO2Q9NQ90 1003 aa22.65■■□□□ 1.22
PCDH1-201ENST00000287008 DHX16O60231 1041 aaKnown RBP22.65■■□□□ 1.22
PCDH1-201ENST00000287008 NUTM2BA6NNL0 878 aaPredicted RBP22.65■■□□□ 1.22
PCDH1-201ENST00000287008 NUTM2EB1AL46 878 aaPredicted RBP22.65■■□□□ 1.22
PCDH1-201ENST00000287008 NUTM2AQ8IVF1 878 aaPredicted RBP22.65■■□□□ 1.22
PCDH1-201ENST00000287008 PDE4AP27815 886 aa22.64■■□□□ 1.22
PCDH1-201ENST00000287008 PPP2R1AP30153 589 aa22.64■■□□□ 1.21
PCDH1-201ENST00000287008 AMER1Q5JTC6 1135 aaPredicted RBP22.64■■□□□ 1.21
PCDH1-201ENST00000287008 RTEL1-TNFRSF6BF6WH68 1400 aa22.64■■□□□ 1.21
PCDH1-201ENST00000287008 PHF14O94880 888 aa22.63■■□□□ 1.21
PCDH1-201ENST00000287008 TRIM29Q14134 588 aa22.63■■□□□ 1.21
PCDH1-201ENST00000287008 GNAI3P08754 354 aa22.63■■□□□ 1.21
PCDH1-201ENST00000287008 SULT6B1Q6IMI4 303 aa22.63■■□□□ 1.21
PCDH1-201ENST00000287008 MCTP1Q6DN14 999 aa22.63■■□□□ 1.21
PCDH1-201ENST00000287008 AAMPQ13685 434 aa22.62■■□□□ 1.21
PCDH1-201ENST00000287008 LNPKQ9C0E8 428 aa22.62■■□□□ 1.21
PCDH1-201ENST00000287008 CD109Q6YHK3 1445 aa22.61■■□□□ 1.21
PCDH1-201ENST00000287008 TCEAL9Q9UHQ7 104 aa22.61■■□□□ 1.21
PCDH1-201ENST00000287008 ZNF530Q6P9A1 599 aaPredicted RBP22.6■■□□□ 1.21
PCDH1-201ENST00000287008 FAM177BA6PVY3 158 aa22.6■■□□□ 1.21
PCDH1-201ENST00000287008 HECW1Q76N89 1606 aa22.6■■□□□ 1.21
PCDH1-201ENST00000287008 SF3B2Q13435 895 aaKnown RBP22.59■■□□□ 1.21
PCDH1-201ENST00000287008 DDX54Q8TDD1 881 aaKnown RBP22.59■■□□□ 1.21
PCDH1-201ENST00000287008 CLASRPQ8N2M8 674 aaKnown RBP22.59■■□□□ 1.21
PCDH1-201ENST00000287008 ERICH2A1L162 156 aa22.59■■□□□ 1.21
PCDH1-201ENST00000287008 ERBINQ96RT1 1412 aa22.59■■□□□ 1.21
PCDH1-201ENST00000287008 KIF6Q6ZMV9 814 aa22.58■■□□□ 1.21
PCDH1-201ENST00000287008 CCDC61Q9Y6R9 512 aa22.58■■□□□ 1.21
PCDH1-201ENST00000287008 GOLGA6L3A6NEY3 463 aa22.58■■□□□ 1.21
PCDH1-201ENST00000287008 WASHC4Q2M389 1173 aa22.58■■□□□ 1.2
PCDH1-201ENST00000287008 ATAD2Q6PL18 1390 aa22.57■■□□□ 1.2
PCDH1-201ENST00000287008 PANK1Q8TE04 598 aa22.57■■□□□ 1.2
PCDH1-201ENST00000287008 NBPF8Q3BBV2 869 aa22.57■■□□□ 1.2
PCDH1-201ENST00000287008 HDGFL1Q5TGJ6 251 aa22.56■■□□□ 1.2
PCDH1-201ENST00000287008 INTS3Q68E01 1043 aaKnown RBP22.56■■□□□ 1.2
PCDH1-201ENST00000287008 RALYLQ86SE5 291 aaKnown RBP22.56■■□□□ 1.2
PCDH1-201ENST00000287008 SPG7Q9UQ90 795 aa22.56■■□□□ 1.2
PCDH1-201ENST00000287008 PES1O00541 588 aaKnown RBP22.56■■□□□ 1.2
PCDH1-201ENST00000287008 CABP4P57796 275 aa22.56■■□□□ 1.2
PCDH1-201ENST00000287008 TWISTNBQ3B726 338 aaPredicted RBP22.56■■□□□ 1.2
PCDH1-201ENST00000287008 NFXL1Q6ZNB6 911 aa22.56■■□□□ 1.2
PCDH1-201ENST00000287008 TPD52L1Q16890 204 aaPredicted RBP22.56■■□□□ 1.2
PCDH1-201ENST00000287008 ABCA10Q8WWZ4 1543 aa22.56■■□□□ 1.2
PCDH1-201ENST00000287008 DAPK1P53355 1430 aa22.56■■□□□ 1.2
PCDH1-201ENST00000287008 DEKP35659 375 aaKnown RBP22.55■■□□□ 1.2
PCDH1-201ENST00000287008 FOXD4L6Q3SYB3 417 aaPredicted RBP22.55■■□□□ 1.2
PCDH1-201ENST00000287008 FOXD4L3Q6VB84 417 aaPredicted RBP22.55■■□□□ 1.2
PCDH1-201ENST00000287008 CEP89Q96ST8 783 aa22.55■■□□□ 1.2
PCDH1-201ENST00000287008 SURF6O75683 361 aaKnown RBP22.55■■□□□ 1.2
PCDH1-201ENST00000287008 PNISRQ8TF01 805 aaKnown RBP22.55■■□□□ 1.2
PCDH1-201ENST00000287008 PIP4K2BP78356 416 aa22.54■■□□□ 1.2
PCDH1-201ENST00000287008 CCDC27Q2M243 656 aa22.54■■□□□ 1.2
PCDH1-201ENST00000287008 EXOSC9Q06265 439 aaKnown RBP22.54■■□□□ 1.2
PCDH1-201ENST00000287008 DCAF8L1A6NGE4 600 aa22.54■■□□□ 1.2
PCDH1-201ENST00000287008 DDX11L8A8MPP1 907 aa22.54■■□□□ 1.2
PCDH1-201ENST00000287008 LAMC3Q9Y6N6 1575 aa22.53■■□□□ 1.2
PCDH1-201ENST00000287008 DDX49Q9Y6V7 483 aaKnown RBP22.53■■□□□ 1.2
PCDH1-201ENST00000287008 EPRSP07814 1512 aaKnown RBP22.53■■□□□ 1.2
PCDH1-201ENST00000287008 NOC3LQ8WTT2 800 aaKnown RBP22.53■■□□□ 1.2
PCDH1-201ENST00000287008 WWC1Q8IX03 1113 aa22.52■■□□□ 1.2
PCDH1-201ENST00000287008 TSHZ2Q9NRE2 1034 aa22.52■■□□□ 1.2
PCDH1-201ENST00000287008 TPM3P06753 285 aa22.51■■□□□ 1.19
PCDH1-201ENST00000287008 XPCQ01831 940 aaPredicted RBP22.51■■□□□ 1.19
PCDH1-201ENST00000287008 BECN2A8MW95 431 aa22.5■■□□□ 1.19
PCDH1-201ENST00000287008 TBC1D2BQ9UPU7 963 aa22.5■■□□□ 1.19
PCDH1-201ENST00000287008 ZC3H6P61129 1189 aaKnown RBP22.5■■□□□ 1.19
PCDH1-201ENST00000287008 NUDT16Q96DE0 195 aaKnown RBP22.5■■□□□ 1.19
PCDH1-201ENST00000287008 MAGI1Q96QZ7 1491 aaPredicted RBP22.5■■□□□ 1.19
PCDH1-201ENST00000287008 CWC22Q9HCG8 908 aaKnown RBP22.49■■□□□ 1.19
PCDH1-201ENST00000287008 CDK13Q14004 1512 aaKnown RBP22.49■■□□□ 1.19
PCDH1-201ENST00000287008 ARHGEF11O15085 1522 aa22.48■■□□□ 1.19
PCDH1-201ENST00000287008 SAMD1Q6SPF0 538 aaPredicted RBP22.48■■□□□ 1.19
PCDH1-201ENST00000287008 CCDC47Q96A33 483 aaKnown RBP22.48■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms