RNA–Protein interactions for RNA: ENST00000274071.6

PDGFC-201, Transcript of platelet derived growth factor C, humanhuman

TSL 1 (best)

Gene PDGFC, Length 2,987 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-201ENST00000274071 CDC42BPAQ5VT25 1732 aa11.47□□□□□ -0.57
PDGFC-201ENST00000274071 ERCC6L2Q5T890 1561 aa11.47□□□□□ -0.57
PDGFC-201ENST00000274071 U2AF2P26368 475 aaKnown RBP eCLIP11.46□□□□□ -0.57
PDGFC-201ENST00000274071 CNPY4Q8N129 248 aa11.46□□□□□ -0.57
PDGFC-201ENST00000274071 PRIMPOLQ96LW4 560 aa11.46□□□□□ -0.57
PDGFC-201ENST00000274071 IBTKQ9P2D0 1353 aaPredicted RBP11.46□□□□□ -0.58
PDGFC-201ENST00000274071 ZBTB7CA1YPR0 619 aa11.46□□□□□ -0.58
PDGFC-201ENST00000274071 TRIM6-TRIM34B2RNG4 842 aa11.46□□□□□ -0.58
PDGFC-201ENST00000274071 PDCL2Q8N4E4 241 aa11.46□□□□□ -0.58
PDGFC-201ENST00000274071 TRIM34Q9BYJ4 488 aa11.46□□□□□ -0.58
PDGFC-201ENST00000274071 TULP2O00295 520 aa11.45□□□□□ -0.58
PDGFC-201ENST00000274071 HMGN5P82970 282 aaKnown RBP11.45□□□□□ -0.58
PDGFC-201ENST00000274071 TIGD1Q96MW7 591 aa11.45□□□□□ -0.58
PDGFC-201ENST00000274071 MYCNP04198 464 aaPredicted RBP11.45□□□□□ -0.58
PDGFC-201ENST00000274071 RBM25P49756 843 aaKnown RBP11.45□□□□□ -0.58
PDGFC-201ENST00000274071 RALBP1Q15311 655 aa11.45□□□□□ -0.58
PDGFC-201ENST00000274071 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.44□□□□□ -0.58
PDGFC-201ENST00000274071 KIF3AQ9Y496 699 aa11.44□□□□□ -0.58
PDGFC-201ENST00000274071 CLGNO14967 610 aa11.44□□□□□ -0.58
PDGFC-201ENST00000274071 SLFN14P0C7P3 912 aa11.44□□□□□ -0.58
PDGFC-201ENST00000274071 RBSNQ9H1K0 784 aa11.44□□□□□ -0.58
PDGFC-201ENST00000274071 BCL2L12Q9HB09 334 aa11.44□□□□□ -0.58
PDGFC-201ENST00000274071 KIF15Q9NS87 1388 aa11.44□□□□□ -0.58
PDGFC-201ENST00000274071 PTMSP20962 102 aa11.43□□□□□ -0.58
PDGFC-201ENST00000274071 HAP1P54257 671 aaPredicted RBP11.43□□□□□ -0.58
PDGFC-201ENST00000274071 ROCK2O75116 1388 aaKnown RBP11.43□□□□□ -0.58
PDGFC-201ENST00000274071 CCDC66A2RUB6 948 aa11.43□□□□□ -0.58
PDGFC-201ENST00000274071 RAB3GAP1Q15042 981 aa11.43□□□□□ -0.58
PDGFC-201ENST00000274071 HSP90AB1P08238 724 aaKnown RBP11.43□□□□□ -0.58
PDGFC-201ENST00000274071 ZNF445P59923 1031 aa11.43□□□□□ -0.58
PDGFC-201ENST00000274071 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.43□□□□□ -0.58
PDGFC-201ENST00000274071 SLC4A1APQ9BWU0 796 aaKnown RBP11.43□□□□□ -0.58
PDGFC-201ENST00000274071 ANKRD30AQ9BXX3 1397 aa11.43□□□□□ -0.58
PDGFC-201ENST00000274071 KLHL40Q2TBA0 621 aa11.42□□□□□ -0.58
PDGFC-201ENST00000274071 CCDC39Q9UFE4 941 aa11.42□□□□□ -0.58
PDGFC-201ENST00000274071 ADGBQ8N7X0 1667 aa11.42□□□□□ -0.58
PDGFC-201ENST00000274071 CLASP1Q7Z460 1538 aa11.42□□□□□ -0.58
PDGFC-201ENST00000274071 CROCC2H7BZ55 1655 aa11.42□□□□□ -0.58
PDGFC-201ENST00000274071 APPP05067 770 aa11.42□□□□□ -0.58
PDGFC-201ENST00000274071 HNRNPMP52272 730 aaKnown RBP eCLIP11.42□□□□□ -0.58
PDGFC-201ENST00000274071 FEZ1Q99689 392 aa11.42□□□□□ -0.58
PDGFC-201ENST00000274071 C22orf23Q9BZE7 217 aa11.42□□□□□ -0.58
PDGFC-201ENST00000274071 DDX49Q9Y6V7 483 aaKnown RBP11.42□□□□□ -0.58
PDGFC-201ENST00000274071 NCOA3Q9Y6Q9 1424 aa11.42□□□□□ -0.58
PDGFC-201ENST00000274071 ADGRL2O95490 1459 aa11.41□□□□□ -0.58
PDGFC-201ENST00000274071 GABPB1Q06547 395 aaPredicted RBP11.41□□□□□ -0.58
PDGFC-201ENST00000274071 HSCBQ8IWL3 235 aa11.41□□□□□ -0.58
PDGFC-201ENST00000274071 GEMIN8Q9NWZ8 242 aaKnown RBP11.41□□□□□ -0.58
PDGFC-201ENST00000274071 ABCC2Q92887 1545 aa11.41□□□□□ -0.58
PDGFC-201ENST00000274071 TSPY4P0CV99 314 aa11.41□□□□□ -0.58
PDGFC-201ENST00000274071 TSPY10P0CW01 314 aa11.41□□□□□ -0.58
PDGFC-201ENST00000274071 KIAA2012Q0VF49 1180 aa11.41□□□□□ -0.58
PDGFC-201ENST00000274071 NLRP13Q86W25 1043 aa11.41□□□□□ -0.58
PDGFC-201ENST00000274071 YY1AP1Q9H869 796 aa11.41□□□□□ -0.58
PDGFC-201ENST00000274071 EIF3AQ14152 1382 aaKnown RBP11.41□□□□□ -0.58
PDGFC-201ENST00000274071 OGFRQ9NZT2 677 aa11.4□□□□□ -0.58
PDGFC-201ENST00000274071 DUSP27Q5VZP5 1158 aa11.4□□□□□ -0.58
PDGFC-201ENST00000274071 WWC1Q8IX03 1113 aa11.4□□□□□ -0.59
PDGFC-201ENST00000274071 CIZ1Q9ULV3 898 aaPredicted RBP11.4□□□□□ -0.59
PDGFC-201ENST00000274071 BCORL1Q5H9F3 1711 aa11.39□□□□□ -0.59
PDGFC-201ENST00000274071 RTEL1-TNFRSF6BF6WH68 1400 aa11.39□□□□□ -0.59
PDGFC-201ENST00000274071 ANKRD30BQ9BXX2 1392 aa11.39□□□□□ -0.59
PDGFC-201ENST00000274071 PRIM1P49642 420 aaKnown RBP11.39□□□□□ -0.59
PDGFC-201ENST00000274071 SMC5Q8IY18 1101 aa11.39□□□□□ -0.59
PDGFC-201ENST00000274071 NINLQ9Y2I6 1382 aa11.39□□□□□ -0.59
PDGFC-201ENST00000274071 C9orf84Q5VXU9 1444 aa11.38□□□□□ -0.59
PDGFC-201ENST00000274071 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.38□□□□□ -0.59
PDGFC-201ENST00000274071 ANKRD7Q92527 254 aa11.38□□□□□ -0.59
PDGFC-201ENST00000274071 CDC42BPBQ9Y5S2 1711 aa11.38□□□□□ -0.59
PDGFC-201ENST00000274071 SCAPERQ9BY12 1400 aa11.38□□□□□ -0.59
PDGFC-201ENST00000274071 PRR29P0C7W0 189 aa11.38□□□□□ -0.59
PDGFC-201ENST00000274071 ZSCAN23Q3MJ62 389 aa11.38□□□□□ -0.59
PDGFC-201ENST00000274071 ANKRD50Q9ULJ7 1429 aa11.38□□□□□ -0.59
PDGFC-201ENST00000274071 SHANK2Q9UPX8 1470 aa11.37□□□□□ -0.59
PDGFC-201ENST00000274071 LOC102724159A0A0B4J2E5 919 aa11.37□□□□□ -0.59
PDGFC-201ENST00000274071 PWP2Q15269 919 aaKnown RBP11.37□□□□□ -0.59
PDGFC-201ENST00000274071 TERF2Q15554 542 aa11.37□□□□□ -0.59
PDGFC-201ENST00000274071 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.37□□□□□ -0.59
PDGFC-201ENST00000274071 PREX2Q70Z35 1606 aa11.37□□□□□ -0.59
PDGFC-201ENST00000274071 PZPP20742 1482 aa11.37□□□□□ -0.59
PDGFC-201ENST00000274071 MBD5Q9P267 1494 aa11.37□□□□□ -0.59
PDGFC-201ENST00000274071 MFAP1P55081 439 aaKnown RBP11.36□□□□□ -0.59
PDGFC-201ENST00000274071 MLECQ14165 292 aa11.36□□□□□ -0.59
PDGFC-201ENST00000274071 CAVIN1Q6NZI2 390 aaKnown RBP11.36□□□□□ -0.59
PDGFC-201ENST00000274071 SAMD9LQ8IVG5 1584 aa11.36□□□□□ -0.59
PDGFC-201ENST00000274071 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.36□□□□□ -0.59
PDGFC-201ENST00000274071 GOLGA6L22H0YM25 854 aa11.36□□□□□ -0.59
PDGFC-201ENST00000274071 NOLC1Q14978 699 aaKnown RBP eCLIP11.36□□□□□ -0.59
PDGFC-201ENST00000274071 TSPYL1Q9H0U9 437 aa11.36□□□□□ -0.59
PDGFC-201ENST00000274071 CALCOCO1Q9P1Z2 691 aa11.36□□□□□ -0.59
PDGFC-201ENST00000274071 ARHGEF5Q12774 1597 aa11.36□□□□□ -0.59
PDGFC-201ENST00000274071 TTC37Q6PGP7 1564 aa11.36□□□□□ -0.59
PDGFC-201ENST00000274071 USP47Q96K76 1375 aa11.35□□□□□ -0.59
PDGFC-201ENST00000274071 FEZ2Q9UHY8 353 aaPredicted RBP11.35□□□□□ -0.59
PDGFC-201ENST00000274071 BLMP54132 1417 aaPredicted RBP11.35□□□□□ -0.59
PDGFC-201ENST00000274071 AXDND1Q5T1B0 1012 aaPredicted RBP11.35□□□□□ -0.59
PDGFC-201ENST00000274071 TRERF1Q96PN7 1200 aa11.35□□□□□ -0.59
PDGFC-201ENST00000274071 RPRD2Q5VT52 1461 aaKnown RBP11.35□□□□□ -0.59
PDGFC-201ENST00000274071 FAM193AP78312 1265 aa11.34□□□□□ -0.59
PDGFC-201ENST00000274071 PIBF1Q8WXW3 757 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms