RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 ABCC11Q96J66 1382 aa20.5■□□□□ 0.87
SF3B4-201ENST00000271628 C3P01024 1663 aa20.5■□□□□ 0.87
SF3B4-201ENST00000271628 ATAD2Q6PL18 1390 aa20.49■□□□□ 0.87
SF3B4-201ENST00000271628 ANKRD36BQ8N2N9 1353 aa20.49■□□□□ 0.87
SF3B4-201ENST00000271628 NRXN3Q9Y4C0 1643 aa20.49■□□□□ 0.87
SF3B4-201ENST00000271628 NSD3Q9BZ95 1437 aa20.48■□□□□ 0.87
SF3B4-201ENST00000271628 SRPK2P78362 688 aaKnown RBP20.48■□□□□ 0.87
SF3B4-201ENST00000271628 CABP2Q9NPB3 220 aa20.48■□□□□ 0.87
SF3B4-201ENST00000271628 USP32Q8NFA0 1604 aa20.48■□□□□ 0.87
SF3B4-201ENST00000271628 CEBPAP49715 358 aaPredicted RBP20.46■□□□□ 0.87
SF3B4-201ENST00000271628 MINK1Q8N4C8 1332 aaPredicted RBP20.46■□□□□ 0.87
SF3B4-201ENST00000271628 DNAJC5Q9H3Z4 198 aa20.46■□□□□ 0.87
SF3B4-201ENST00000271628 SMG6Q86US8 1419 aaKnown RBP20.45■□□□□ 0.86
SF3B4-201ENST00000271628 SIRT1Q96EB6 747 aa20.45■□□□□ 0.86
SF3B4-201ENST00000271628 CGNL1Q0VF96 1302 aa20.45■□□□□ 0.86
SF3B4-201ENST00000271628 WDR43Q15061 677 aaKnown RBP eCLIP20.44■□□□□ 0.86
SF3B4-201ENST00000271628 BLMP54132 1417 aaPredicted RBP20.44■□□□□ 0.86
SF3B4-201ENST00000271628 NSD2O96028 1365 aa20.43■□□□□ 0.86
SF3B4-201ENST00000271628 NUDCQ9Y266 331 aa20.42■□□□□ 0.86
SF3B4-201ENST00000271628 METP08581 1390 aa20.42■□□□□ 0.86
SF3B4-201ENST00000271628 CDK19Q9BWU1 502 aa20.42■□□□□ 0.86
SF3B4-201ENST00000271628 EID1Q9Y6B2 187 aa20.42■□□□□ 0.86
SF3B4-201ENST00000271628 MORC1Q86VD1 984 aa20.41■□□□□ 0.86
SF3B4-201ENST00000271628 TERF2IPQ9NYB0 399 aa20.41■□□□□ 0.86
SF3B4-201ENST00000271628 KNDC1Q76NI1 1749 aa20.41■□□□□ 0.86
SF3B4-201ENST00000271628 PLEKHG1Q9ULL1 1385 aa20.41■□□□□ 0.86
SF3B4-201ENST00000271628 PDE3BQ13370 1112 aa20.41■□□□□ 0.86
SF3B4-201ENST00000271628 TECPR2O15040 1411 aa20.4■□□□□ 0.86
SF3B4-201ENST00000271628 FAM135BQ49AJ0 1406 aa20.4■□□□□ 0.86
SF3B4-201ENST00000271628 ADAMTS8Q9UP79 889 aa20.4■□□□□ 0.86
SF3B4-201ENST00000271628 WAPLQ7Z5K2 1190 aa20.39■□□□□ 0.86
SF3B4-201ENST00000271628 TXNDC2Q86VQ3 553 aa20.39■□□□□ 0.85
SF3B4-201ENST00000271628 THEMISQ8N1K5 641 aaPredicted RBP20.39■□□□□ 0.85
SF3B4-201ENST00000271628 SLIT1O75093 1534 aa20.38■□□□□ 0.85
SF3B4-201ENST00000271628 ERICH6BQ5W0A0 696 aa20.38■□□□□ 0.85
SF3B4-201ENST00000271628 A0A1W2PP64 1363 aa20.37■□□□□ 0.85
SF3B4-201ENST00000271628 POLR3AO14802 1390 aaPredicted RBP20.37■□□□□ 0.85
SF3B4-201ENST00000271628 LTKP29376 864 aa20.37■□□□□ 0.85
SF3B4-201ENST00000271628 ARHGAP23Q9P227 1491 aa20.36■□□□□ 0.85
SF3B4-201ENST00000271628 ADAMTS13Q76LX8 1427 aa20.36■□□□□ 0.85
SF3B4-201ENST00000271628 CPS1P31327 1500 aa20.36■□□□□ 0.85
SF3B4-201ENST00000271628 HDGFL2Q7Z4V5 671 aaPredicted RBP20.36■□□□□ 0.85
SF3B4-201ENST00000271628 PLEKHH1Q9ULM0 1364 aa20.35■□□□□ 0.85
SF3B4-201ENST00000271628 WASLO00401 505 aaPredicted RBP20.33■□□□□ 0.85
SF3B4-201ENST00000271628 PLPPR3Q6T4P5 718 aa20.33■□□□□ 0.85
SF3B4-201ENST00000271628 CD163L1Q9NR16 1453 aa20.32■□□□□ 0.84
SF3B4-201ENST00000271628 CABP1Q9NZU7 370 aa20.32■□□□□ 0.84
SF3B4-201ENST00000271628 MED14O60244 1454 aa20.32■□□□□ 0.84
SF3B4-201ENST00000271628 SENP3-EIF4A1A0A087X0R7 540 aa20.31■□□□□ 0.84
SF3B4-201ENST00000271628 ATP7BP35670 1465 aa20.31■□□□□ 0.84
SF3B4-201ENST00000271628 TBX22Q9Y458 520 aa20.3■□□□□ 0.84
SF3B4-201ENST00000271628 SALL2Q9Y467 1007 aaPredicted RBP20.3■□□□□ 0.84
SF3B4-201ENST00000271628 CFAP53Q96M91 514 aa20.28■□□□□ 0.84
SF3B4-201ENST00000271628 RIMS1Q86UR5 1692 aaKnown RBP20.28■□□□□ 0.84
SF3B4-201ENST00000271628 TNNT2P45379 298 aaPredicted RBP20.28■□□□□ 0.84
SF3B4-201ENST00000271628 NGEFQ8N5V2 710 aa20.27■□□□□ 0.84
SF3B4-201ENST00000271628 DIP2AQ14689 1571 aa20.26■□□□□ 0.83
SF3B4-201ENST00000271628 ANKRD26Q9UPS8 1709 aa20.26■□□□□ 0.83
SF3B4-201ENST00000271628 FYB1O15117 783 aa20.26■□□□□ 0.83
SF3B4-201ENST00000271628 MTHFSP49914 203 aa20.26■□□□□ 0.83
SF3B4-201ENST00000271628 RNF123Q5XPI4 1314 aa20.26■□□□□ 0.83
SF3B4-201ENST00000271628 ROBO2Q9HCK4 1378 aa20.26■□□□□ 0.83
SF3B4-201ENST00000271628 CEP170BQ9Y4F5 1589 aaPredicted RBP20.25■□□□□ 0.83
SF3B4-201ENST00000271628 SLC26A8Q96RN1 970 aa20.25■□□□□ 0.83
SF3B4-201ENST00000271628 ADAMTSL3P82987 1691 aa20.25■□□□□ 0.83
SF3B4-201ENST00000271628 RBM19Q9Y4C8 960 aaKnown RBP20.25■□□□□ 0.83
SF3B4-201ENST00000271628 CCDC61Q9Y6R9 512 aa20.25■□□□□ 0.83
SF3B4-201ENST00000271628 NUDT16Q96DE0 195 aaKnown RBP20.23■□□□□ 0.83
SF3B4-201ENST00000271628 PPIP5K1Q6PFW1 1433 aa20.23■□□□□ 0.83
SF3B4-201ENST00000271628 ADGRB2O60241 1585 aa20.23■□□□□ 0.83
SF3B4-201ENST00000271628 GGNBP2Q9H3C7 697 aa20.23■□□□□ 0.83
SF3B4-201ENST00000271628 IRX6P78412 446 aaPredicted RBP20.22■□□□□ 0.83
SF3B4-201ENST00000271628 AMOTL2Q9Y2J4 779 aa20.22■□□□□ 0.83
SF3B4-201ENST00000271628 CPSF1Q10570 1443 aaKnown RBP20.22■□□□□ 0.83
SF3B4-201ENST00000271628 KIF20BQ96Q89 1820 aa20.21■□□□□ 0.83
SF3B4-201ENST00000271628 SHPRHQ149N8 1683 aa20.21■□□□□ 0.83
SF3B4-201ENST00000271628 PTPRUQ92729 1446 aa20.2■□□□□ 0.82
SF3B4-201ENST00000271628 EDC4Q6P2E9 1401 aaKnown RBP20.2■□□□□ 0.82
SF3B4-201ENST00000271628 SETD1BQ9UPS6 1966 aaKnown RBP20.2■□□□□ 0.82
SF3B4-201ENST00000271628 CDCA7LQ96GN5 454 aa20.2■□□□□ 0.82
SF3B4-201ENST00000271628 ANP32EQ9BTT0 268 aa20.2■□□□□ 0.82
SF3B4-201ENST00000271628 ZNF692Q9BU19 519 aaPredicted RBP20.2■□□□□ 0.82
SF3B4-201ENST00000271628 PTCH1Q13635 1447 aa20.19■□□□□ 0.82
SF3B4-201ENST00000271628 ZNF521Q96K83 1311 aa20.19■□□□□ 0.82
SF3B4-201ENST00000271628 CCDC146Q8IYE0 955 aa20.19■□□□□ 0.82
SF3B4-201ENST00000271628 PPP4R2Q9NY27 417 aa20.19■□□□□ 0.82
SF3B4-201ENST00000271628 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.19■□□□□ 0.82
SF3B4-201ENST00000271628 PIK3R4Q99570 1358 aa20.19■□□□□ 0.82
SF3B4-201ENST00000271628 ZNF142P52746 1687 aaPredicted RBP20.18■□□□□ 0.82
SF3B4-201ENST00000271628 RCAN3Q9UKA8 241 aa20.18■□□□□ 0.82
SF3B4-201ENST00000271628 CDC42BPGQ6DT37 1551 aa20.18■□□□□ 0.82
SF3B4-201ENST00000271628 APAF1O14727 1248 aa20.17■□□□□ 0.82
SF3B4-201ENST00000271628 GOLGA2Q08379 1002 aa20.17■□□□□ 0.82
SF3B4-201ENST00000271628 ANKLE2Q86XL3 938 aa20.17■□□□□ 0.82
SF3B4-201ENST00000271628 RUNDC1Q96C34 613 aa20.16■□□□□ 0.82
SF3B4-201ENST00000271628 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.15■□□□□ 0.822e-6■■■■□ 21.8
SF3B4-201ENST00000271628 MON2Q7Z3U7 1717 aa20.14■□□□□ 0.81
SF3B4-201ENST00000271628 ITSN1Q15811 1721 aa20.13■□□□□ 0.81
SF3B4-201ENST00000271628 AKAP12Q02952 1782 aa20.13■□□□□ 0.81
SF3B4-201ENST00000271628 PRR36Q9H6K5 1346 aa20.13■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms