RNA–Protein interactions for RNA: ENST00000258733.8

GPNMB-201, Transcript of glycoprotein nmb, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene GPNMB, Length 2,862 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-201ENST00000258733 ATAD2BQ9ULI0 1458 aa9.55□□□□□ -0.88
GPNMB-201ENST00000258733 MSNP26038 577 aaKnown RBP9.54□□□□□ -0.88
GPNMB-201ENST00000258733 PAX7P23759 505 aa9.53□□□□□ -0.88
GPNMB-201ENST00000258733 RBM5P52756 815 aaKnown RBP eCLIP9.53□□□□□ -0.88
GPNMB-201ENST00000258733 GABPB1Q06547 395 aaPredicted RBP9.53□□□□□ -0.88
GPNMB-201ENST00000258733 ZRSR2Q15696 482 aaKnown RBP9.53□□□□□ -0.88
GPNMB-201ENST00000258733 SMC3Q9UQE7 1217 aa9.53□□□□□ -0.88
GPNMB-201ENST00000258733 CTAGE5O15320 804 aa9.53□□□□□ -0.88
GPNMB-201ENST00000258733 IPO7O95373 1038 aaKnown RBP9.53□□□□□ -0.88
GPNMB-201ENST00000258733 GET4Q7L5D6 327 aaPredicted RBP9.53□□□□□ -0.88
GPNMB-201ENST00000258733 JMYQ8N9B5 988 aa9.53□□□□□ -0.88
GPNMB-201ENST00000258733 NUB1Q9Y5A7 615 aa9.53□□□□□ -0.88
GPNMB-201ENST00000258733 UVSSAQ2YD98 709 aa9.52□□□□□ -0.89
GPNMB-201ENST00000258733 APBB1IPQ7Z5R6 666 aaPredicted RBP9.52□□□□□ -0.89
GPNMB-201ENST00000258733 TNPO1Q92973 898 aaKnown RBP9.52□□□□□ -0.89
GPNMB-201ENST00000258733 PHLDB1Q86UU1 1377 aa9.52□□□□□ -0.89
GPNMB-201ENST00000258733 SF3A1Q15459 793 aaKnown RBP9.52□□□□□ -0.89
GPNMB-201ENST00000258733 ANAPC4Q9UJX5 808 aa9.52□□□□□ -0.89
GPNMB-201ENST00000258733 KIF21BO75037 1637 aa9.52□□□□□ -0.89
GPNMB-201ENST00000258733 FOXD4Q12950 439 aaPredicted RBP9.51□□□□□ -0.89
GPNMB-201ENST00000258733 SASS6Q6UVJ0 657 aa9.51□□□□□ -0.89
GPNMB-201ENST00000258733 GRPEL1Q9HAV7 217 aa9.51□□□□□ -0.89
GPNMB-201ENST00000258733 SPINK5Q9NQ38 1064 aaPredicted RBP9.51□□□□□ -0.89
GPNMB-201ENST00000258733 KIF3CO14782 793 aa9.51□□□□□ -0.89
GPNMB-201ENST00000258733 HNRNPUQ00839 825 aaKnown RBP eCLIP9.51□□□□□ -0.89
GPNMB-201ENST00000258733 NUTM2GQ5VZR2 741 aa9.51□□□□□ -0.89
GPNMB-201ENST00000258733 NOL8Q76FK4 1167 aaKnown RBP9.51□□□□□ -0.89
GPNMB-201ENST00000258733 MTA3Q9BTC8 594 aa9.51□□□□□ -0.89
GPNMB-201ENST00000258733 NUCKS1Q9H1E3 243 aaKnown RBP9.51□□□□□ -0.89
GPNMB-201ENST00000258733 NINLQ9Y2I6 1382 aa9.51□□□□□ -0.89
GPNMB-201ENST00000258733 MS4A1P11836 297 aa9.5□□□□□ -0.89
GPNMB-201ENST00000258733 TMX1Q9H3N1 280 aa9.5□□□□□ -0.89
GPNMB-201ENST00000258733 CXorf56Q9H5V9 222 aa9.5□□□□□ -0.89
GPNMB-201ENST00000258733 LIG1P18858 919 aa9.5□□□□□ -0.89
GPNMB-201ENST00000258733 CSPP1Q1MSJ5 1256 aa9.5□□□□□ -0.89
GPNMB-201ENST00000258733 C11orf91Q3C1V1 193 aa9.5□□□□□ -0.89
GPNMB-201ENST00000258733 ZNF280DQ6N043 979 aa9.5□□□□□ -0.89
GPNMB-201ENST00000258733 PNISRQ8TF01 805 aaKnown RBP9.5□□□□□ -0.89
GPNMB-201ENST00000258733 ISY1Q9ULR0 285 aaKnown RBP9.5□□□□□ -0.89
GPNMB-201ENST00000258733 SPDYE4A6NLX3 237 aa9.49□□□□□ -0.89
GPNMB-201ENST00000258733 TPM3P06753 285 aa9.49□□□□□ -0.89
GPNMB-201ENST00000258733 RBM26Q5T8P6 1007 aaKnown RBP9.49□□□□□ -0.89
GPNMB-201ENST00000258733 FAM212AQ96EL1 285 aa9.49□□□□□ -0.89
GPNMB-201ENST00000258733 SWT1Q5T5J6 900 aaKnown RBP9.49□□□□□ -0.89
GPNMB-201ENST00000258733 TOMM22Q9NS69 142 aa9.49□□□□□ -0.89
GPNMB-201ENST00000258733 ARID3CA6NKF2 412 aa9.49□□□□□ -0.89
GPNMB-201ENST00000258733 ANP32CO43423 234 aa9.49□□□□□ -0.89
GPNMB-201ENST00000258733 ACRBPQ8NEB7 543 aa9.49□□□□□ -0.89
GPNMB-201ENST00000258733 SUDS3Q9H7L9 328 aaPredicted RBP9.49□□□□□ -0.89
GPNMB-201ENST00000258733 TNIKQ9UKE5 1360 aa9.48□□□□□ -0.89
GPNMB-201ENST00000258733 RHBDL3P58872 404 aa9.48□□□□□ -0.89
GPNMB-201ENST00000258733 CREBRFQ8IUR6 639 aa9.48□□□□□ -0.89
GPNMB-201ENST00000258733 SLFN14P0C7P3 912 aa9.48□□□□□ -0.89
GPNMB-201ENST00000258733 PPP2R5AQ15172 486 aa9.48□□□□□ -0.89
GPNMB-201ENST00000258733 CCDC125Q86Z20 511 aa9.48□□□□□ -0.89
GPNMB-201ENST00000258733 EVI5LQ96CN4 794 aa9.48□□□□□ -0.89
GPNMB-201ENST00000258733 SIN3AQ96ST3 1273 aa9.48□□□□□ -0.89
GPNMB-201ENST00000258733 H0YHG0 523 aa9.47□□□□□ -0.89
GPNMB-201ENST00000258733 SARNPP82979 210 aaKnown RBP9.47□□□□□ -0.89
GPNMB-201ENST00000258733 KNSTRNQ9Y448 316 aa9.47□□□□□ -0.89
GPNMB-201ENST00000258733 ABCC8Q09428 1581 aa9.47□□□□□ -0.89
GPNMB-201ENST00000258733 TESPA1A2RU30 521 aaPredicted RBP9.47□□□□□ -0.89
GPNMB-201ENST00000258733 ZNF710Q8N1W2 664 aa9.47□□□□□ -0.89
GPNMB-201ENST00000258733 TRERF1Q96PN7 1200 aa9.47□□□□□ -0.89
GPNMB-201ENST00000258733 UPF2Q9HAU5 1272 aaKnown RBP9.47□□□□□ -0.89
GPNMB-201ENST00000258733 DDX49Q9Y6V7 483 aaKnown RBP9.47□□□□□ -0.89
GPNMB-201ENST00000258733 RASSF4Q9H2L5 321 aa9.46□□□□□ -0.89
GPNMB-201ENST00000258733 PRDM2Q13029 1718 aa9.46□□□□□ -0.89
GPNMB-201ENST00000258733 CCDC181Q5TID7 509 aa9.46□□□□□ -0.9
GPNMB-201ENST00000258733 MFSD4BQ5TF39 518 aa9.45□□□□□ -0.9
GPNMB-201ENST00000258733 HDGFL1Q5TGJ6 251 aa9.45□□□□□ -0.9
GPNMB-201ENST00000258733 CADPS2Q86UW7 1296 aa9.45□□□□□ -0.9
GPNMB-201ENST00000258733 KCNV2Q8TDN2 545 aa9.45□□□□□ -0.9
GPNMB-201ENST00000258733 PAXBP1Q9Y5B6 917 aa9.45□□□□□ -0.9
GPNMB-201ENST00000258733 ERBB3P21860 1342 aa9.45□□□□□ -0.9
GPNMB-201ENST00000258733 BECN1Q14457 450 aa9.45□□□□□ -0.9
GPNMB-201ENST00000258733 FAM184AQ8NB25 1140 aa9.45□□□□□ -0.9
GPNMB-201ENST00000258733 ARAP1Q96P48 1450 aa9.45□□□□□ -0.9
GPNMB-201ENST00000258733 TPD52L2O43399 206 aaKnown RBP9.45□□□□□ -0.9
GPNMB-201ENST00000258733 PAX3P23760 479 aa9.45□□□□□ -0.9
GPNMB-201ENST00000258733 MAF1Q9H063 256 aa9.45□□□□□ -0.9
GPNMB-201ENST00000258733 CAND2O75155 1236 aa9.44□□□□□ -0.9
GPNMB-201ENST00000258733 ABCD1P33897 745 aa9.44□□□□□ -0.9
GPNMB-201ENST00000258733 RAD50Q92878 1312 aa9.44□□□□□ -0.9
GPNMB-201ENST00000258733 RPAINQ86UA6 219 aa9.44□□□□□ -0.9
GPNMB-201ENST00000258733 MORC1Q86VD1 984 aa9.44□□□□□ -0.9
GPNMB-201ENST00000258733 FEZ1Q99689 392 aa9.44□□□□□ -0.9
GPNMB-201ENST00000258733 CCDC173Q0VFZ6 552 aa9.43□□□□□ -0.9
GPNMB-201ENST00000258733 MAP9Q49MG5 647 aa9.43□□□□□ -0.9
GPNMB-201ENST00000258733 CCDC91Q7Z6B0 441 aa9.43□□□□□ -0.9
GPNMB-201ENST00000258733 ERCC4Q92889 916 aaPredicted RBP9.43□□□□□ -0.9
GPNMB-201ENST00000258733 NAP1L1P55209 391 aaKnown RBP9.43□□□□□ -0.9
GPNMB-201ENST00000258733 RAD51AP2Q09MP3 1159 aa9.43□□□□□ -0.9
GPNMB-201ENST00000258733 DDX10Q13206 875 aaKnown RBP9.43□□□□□ -0.9
GPNMB-201ENST00000258733 MYRIPQ8NFW9 859 aa9.43□□□□□ -0.9
GPNMB-201ENST00000258733 GZF1Q9H116 711 aaPredicted RBP9.43□□□□□ -0.9
GPNMB-201ENST00000258733 BIVM-ERCC5R4GMW8 1640 aa9.43□□□□□ -0.9
GPNMB-201ENST00000258733 KAT6BQ8WYB5 2073 aa9.43□□□□□ -0.9
GPNMB-201ENST00000258733 EPB41L2O43491 1005 aaKnown RBP9.42□□□□□ -0.9
GPNMB-201ENST00000258733 CD151P48509 253 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms