RNA–Protein interactions for RNA: ENST00000244302.8

HIF3A-201, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 1 (best)

Gene HIF3A, Length 2,101 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-201ENST00000244302 ZNF142P52746 1687 aaPredicted RBP17.78■□□□□ 0.44
HIF3A-201ENST00000244302 TULP4Q9NRJ4 1543 aa17.77■□□□□ 0.44
HIF3A-201ENST00000244302 KCNA6P17658 529 aa17.77■□□□□ 0.44
HIF3A-201ENST00000244302 SBNO2Q9Y2G9 1366 aa17.77■□□□□ 0.44
HIF3A-201ENST00000244302 CDK19Q9BWU1 502 aa17.77■□□□□ 0.43
HIF3A-201ENST00000244302 PRKRIP1Q9H875 184 aaPredicted RBP17.77■□□□□ 0.43
HIF3A-201ENST00000244302 SRPK2P78362 688 aaKnown RBP17.76■□□□□ 0.43
HIF3A-201ENST00000244302 CARD14Q9BXL6 1004 aa17.76■□□□□ 0.43
HIF3A-201ENST00000244302 NUTM2FA1L443 756 aa17.75■□□□□ 0.43
HIF3A-201ENST00000244302 EVC2Q86UK5 1308 aa17.75■□□□□ 0.43
HIF3A-201ENST00000244302 CDCA8Q53HL2 280 aa17.74■□□□□ 0.43
HIF3A-201ENST00000244302 CC2D1BQ5T0F9 858 aaKnown RBP17.74■□□□□ 0.43
HIF3A-201ENST00000244302 NPHP4O75161 1426 aaPredicted RBP17.71■□□□□ 0.43
HIF3A-201ENST00000244302 TECPR2O15040 1411 aa17.71■□□□□ 0.42
HIF3A-201ENST00000244302 DLC1Q96QB1 1528 aa17.7■□□□□ 0.42
HIF3A-201ENST00000244302 MYOM1P52179 1685 aa17.7■□□□□ 0.42
HIF3A-201ENST00000244302 WASLO00401 505 aaPredicted RBP17.69■□□□□ 0.42
HIF3A-201ENST00000244302 CABP1Q9NZU7 370 aa17.69■□□□□ 0.42
HIF3A-201ENST00000244302 SIRT1Q96EB6 747 aa17.68■□□□□ 0.42
HIF3A-201ENST00000244302 LMTK3Q96Q04 1460 aa17.68■□□□□ 0.42
HIF3A-201ENST00000244302 SLC24A1O60721 1099 aa17.67■□□□□ 0.42
HIF3A-201ENST00000244302 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.67■□□□□ 0.42
HIF3A-201ENST00000244302 FAM135BQ49AJ0 1406 aa17.67■□□□□ 0.42
HIF3A-201ENST00000244302 AMER1Q5JTC6 1135 aaPredicted RBP17.66■□□□□ 0.42
HIF3A-201ENST00000244302 KNSTRNQ9Y448 316 aa17.66■□□□□ 0.42
HIF3A-201ENST00000244302 CPS1P31327 1500 aa17.66■□□□□ 0.42
HIF3A-201ENST00000244302 PRR36Q9H6K5 1346 aa17.66■□□□□ 0.42
HIF3A-201ENST00000244302 NUDT16Q96DE0 195 aaKnown RBP17.64■□□□□ 0.41
HIF3A-201ENST00000244302 KNDC1Q76NI1 1749 aa17.63■□□□□ 0.41
HIF3A-201ENST00000244302 CCER2I3L3R5 266 aa17.62■□□□□ 0.41
HIF3A-201ENST00000244302 DIP2AQ14689 1571 aa17.61■□□□□ 0.41
HIF3A-201ENST00000244302 PUS7Q96PZ0 661 aaKnown RBP17.6■□□□□ 0.41
HIF3A-201ENST00000244302 A0A1W2PP64 1363 aa17.6■□□□□ 0.41
HIF3A-201ENST00000244302 NSD3Q9BZ95 1437 aa17.6■□□□□ 0.41
HIF3A-201ENST00000244302 CD163L1Q9NR16 1453 aa17.6■□□□□ 0.41
HIF3A-201ENST00000244302 XRN1Q8IZH2 1706 aaKnown RBP17.6■□□□□ 0.41
HIF3A-201ENST00000244302 PTCH1Q13635 1447 aa17.59■□□□□ 0.41
HIF3A-201ENST00000244302 PIK3R4Q99570 1358 aa17.59■□□□□ 0.41
HIF3A-201ENST00000244302 SENP3-EIF4A1A0A087X0R7 540 aa17.59■□□□□ 0.41
HIF3A-201ENST00000244302 MRS2Q9HD23 443 aa17.59■□□□□ 0.41
HIF3A-201ENST00000244302 CHD2O14647 1828 aaKnown RBP17.59■□□□□ 0.41
HIF3A-201ENST00000244302 KTN1Q86UP2 1357 aaKnown RBP17.59■□□□□ 0.41
HIF3A-201ENST00000244302 TNNT2P45379 298 aaPredicted RBP17.59■□□□□ 0.41
HIF3A-201ENST00000244302 ATAD2Q6PL18 1390 aa17.58■□□□□ 0.4
HIF3A-201ENST00000244302 PARD3Q8TEW0 1356 aa17.58■□□□□ 0.4
HIF3A-201ENST00000244302 PMFBP1Q8TBY8 1022 aa17.57■□□□□ 0.4
HIF3A-201ENST00000244302 CCDC61Q9Y6R9 512 aa17.57■□□□□ 0.4
HIF3A-201ENST00000244302 ANKRD36BQ8N2N9 1353 aa17.56■□□□□ 0.4
HIF3A-201ENST00000244302 PROSER2Q86WR7 435 aaPredicted RBP17.56■□□□□ 0.4
HIF3A-201ENST00000244302 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.56■□□□□ 0.4
HIF3A-201ENST00000244302 FAM9BQ8IZU0 186 aa17.56■□□□□ 0.4
HIF3A-201ENST00000244302 PPIP5K1Q6PFW1 1433 aa17.56■□□□□ 0.4
HIF3A-201ENST00000244302 STRCQ7RTU9 1775 aa17.56■□□□□ 0.4
HIF3A-201ENST00000244302 RALBP1Q15311 655 aa17.56■□□□□ 0.4
HIF3A-201ENST00000244302 GGNBP2Q9H3C7 697 aa17.55■□□□□ 0.4
HIF3A-201ENST00000244302 FBLN1P23142 703 aa17.54■□□□□ 0.4
HIF3A-201ENST00000244302 C14orf37Q86TY3 774 aa17.54■□□□□ 0.4
HIF3A-201ENST00000244302 ZRANB1Q9UGI0 708 aa17.54■□□□□ 0.4
HIF3A-201ENST00000244302 ATP7BP35670 1465 aa17.54■□□□□ 0.4
HIF3A-201ENST00000244302 MYBBP1AQ9BQG0 1328 aaKnown RBP17.53■□□□□ 0.4
HIF3A-201ENST00000244302 ZNF335Q9H4Z2 1342 aaPredicted RBP17.53■□□□□ 0.4
HIF3A-201ENST00000244302 TERF2IPQ9NYB0 399 aa17.53■□□□□ 0.4
HIF3A-201ENST00000244302 FYB1O15117 783 aa17.52■□□□□ 0.4
HIF3A-201ENST00000244302 PPP2R1AP30153 589 aa17.52■□□□□ 0.4
HIF3A-201ENST00000244302 STRCP1A6NGW2 1772 aa17.52■□□□□ 0.39
HIF3A-201ENST00000244302 HDGFL2Q7Z4V5 671 aaPredicted RBP17.51■□□□□ 0.39
HIF3A-201ENST00000244302 ACEP12821 1306 aa17.51■□□□□ 0.39
HIF3A-201ENST00000244302 MYT1Q01538 1121 aa17.5■□□□□ 0.39
HIF3A-201ENST00000244302 MORC1Q86VD1 984 aa17.49■□□□□ 0.39
HIF3A-201ENST00000244302 RGPD8O14715 1765 aaPredicted RBP17.49■□□□□ 0.39
HIF3A-201ENST00000244302 USP32Q8NFA0 1604 aa17.49■□□□□ 0.39
HIF3A-201ENST00000244302 NKTRP30414 1462 aaKnown RBP17.49■□□□□ 0.39
HIF3A-201ENST00000244302 ADGRB2O60241 1585 aa17.49■□□□□ 0.39
HIF3A-201ENST00000244302 NME9Q86XW9 330 aa17.48■□□□□ 0.39
HIF3A-201ENST00000244302 CGNL1Q0VF96 1302 aa17.48■□□□□ 0.39
HIF3A-201ENST00000244302 TMEM94Q12767 1356 aa17.48■□□□□ 0.39
HIF3A-201ENST00000244302 CPSF1Q10570 1443 aaKnown RBP17.48■□□□□ 0.39
HIF3A-201ENST00000244302 PNISRQ8TF01 805 aaKnown RBP17.48■□□□□ 0.39
HIF3A-201ENST00000244302 NALCNQ8IZF0 1738 aa17.47■□□□□ 0.39
HIF3A-201ENST00000244302 PLEKHG3A1L390 1219 aa17.47■□□□□ 0.39
HIF3A-201ENST00000244302 NLRP13Q86W25 1043 aa17.47■□□□□ 0.39
HIF3A-201ENST00000244302 ORAI2Q96SN7 254 aa17.47■□□□□ 0.39
HIF3A-201ENST00000244302 NINLQ9Y2I6 1382 aa17.47■□□□□ 0.39
HIF3A-201ENST00000244302 NPC1L1Q9UHC9 1359 aa17.46■□□□□ 0.39
HIF3A-201ENST00000244302 ESCO1Q5FWF5 840 aa17.45■□□□□ 0.38
HIF3A-201ENST00000244302 ADGRL3Q9HAR2 1447 aa17.45■□□□□ 0.38
HIF3A-201ENST00000244302 NWD1Q149M9 1564 aa17.44■□□□□ 0.38
HIF3A-201ENST00000244302 NGDNQ8NEJ9 315 aaKnown RBP17.44■□□□□ 0.38
HIF3A-201ENST00000244302 XPCQ01831 940 aaPredicted RBP17.43■□□□□ 0.38
HIF3A-201ENST00000244302 BRD4O60885 1362 aaPredicted RBP17.42■□□□□ 0.38
HIF3A-201ENST00000244302 DDX17Q92841 729 aaKnown RBP17.42■□□□□ 0.38
HIF3A-201ENST00000244302 C19orf44Q9H6X5 657 aa17.42■□□□□ 0.38
HIF3A-201ENST00000244302 NUTM2GQ5VZR2 741 aa17.41■□□□□ 0.38
HIF3A-201ENST00000244302 CDC42BPGQ6DT37 1551 aa17.41■□□□□ 0.38
HIF3A-201ENST00000244302 TTC21BQ7Z4L5 1316 aa17.41■□□□□ 0.38
HIF3A-201ENST00000244302 MTHFSP49914 203 aa17.41■□□□□ 0.38
HIF3A-201ENST00000244302 HNRNPUQ00839 825 aaKnown RBP eCLIP17.41■□□□□ 0.38
HIF3A-201ENST00000244302 ZNF692Q9BU19 519 aaPredicted RBP17.4■□□□□ 0.38
HIF3A-201ENST00000244302 PHF8Q9UPP1 1060 aa17.4■□□□□ 0.38
HIF3A-201ENST00000244302 FOXO3O43524 673 aa17.39■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms