RNA–Protein interactions for RNA: ENST00000243082.4

HOXC11-201, Transcript of homeobox C11, humanhuman

TSL 3 BASIC

Gene HOXC11, Length 2,039 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-201ENST00000243082 RNF123Q5XPI4 1314 aa24.68■■□□□ 1.54
HOXC11-201ENST00000243082 PDE3BQ13370 1112 aa24.68■■□□□ 1.54
HOXC11-201ENST00000243082 WDR43Q15061 677 aaKnown RBP eCLIP24.68■■□□□ 1.54
HOXC11-201ENST00000243082 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.68■■□□□ 1.54
HOXC11-201ENST00000243082 USP32Q8NFA0 1604 aa24.68■■□□□ 1.54
HOXC11-201ENST00000243082 MINK1Q8N4C8 1332 aaPredicted RBP24.67■■□□□ 1.54
HOXC11-201ENST00000243082 NRXN3Q9Y4C0 1643 aa24.65■■□□□ 1.54
HOXC11-201ENST00000243082 DLC1Q96QB1 1528 aa24.65■■□□□ 1.54
HOXC11-201ENST00000243082 SRPK2P78362 688 aaKnown RBP24.64■■□□□ 1.54
HOXC11-201ENST00000243082 NINLQ9Y2I6 1382 aa24.64■■□□□ 1.53
HOXC11-201ENST00000243082 MORC1Q86VD1 984 aa24.63■■□□□ 1.53
HOXC11-201ENST00000243082 CGNL1Q0VF96 1302 aa24.63■■□□□ 1.53
HOXC11-201ENST00000243082 ATAD2Q6PL18 1390 aa24.61■■□□□ 1.53
HOXC11-201ENST00000243082 ABCC11Q96J66 1382 aa24.61■■□□□ 1.53
HOXC11-201ENST00000243082 HDGFP51858 240 aaKnown RBP24.61■■□□□ 1.53
HOXC11-201ENST00000243082 UBR1Q8IWV7 1749 aa24.6■■□□□ 1.53
HOXC11-201ENST00000243082 POLR3AO14802 1390 aaPredicted RBP24.6■■□□□ 1.53
HOXC11-201ENST00000243082 CDCA7LQ96GN5 454 aa24.6■■□□□ 1.53
HOXC11-201ENST00000243082 TMEM2Q9UHN6 1383 aa24.59■■□□□ 1.53
HOXC11-201ENST00000243082 TRHP20396 242 aaPredicted RBP24.59■■□□□ 1.53
HOXC11-201ENST00000243082 WAPLQ7Z5K2 1190 aa24.59■■□□□ 1.53
HOXC11-201ENST00000243082 PPP4R2Q9NY27 417 aa24.59■■□□□ 1.53
HOXC11-201ENST00000243082 A0A1W2PP64 1363 aa24.59■■□□□ 1.53
HOXC11-201ENST00000243082 METP08581 1390 aa24.59■■□□□ 1.53
HOXC11-201ENST00000243082 CDK19Q9BWU1 502 aa24.58■■□□□ 1.53
HOXC11-201ENST00000243082 NSD2O96028 1365 aa24.57■■□□□ 1.52
HOXC11-201ENST00000243082 CEBPAP49715 358 aaPredicted RBP24.57■■□□□ 1.52
HOXC11-201ENST00000243082 PLEKHH1Q9ULM0 1364 aa24.57■■□□□ 1.52
HOXC11-201ENST00000243082 CD163L1Q9NR16 1453 aa24.56■■□□□ 1.52
HOXC11-201ENST00000243082 NLRP1Q9C000 1473 aa24.55■■□□□ 1.52
HOXC11-201ENST00000243082 TNNT2P45379 298 aaPredicted RBP24.54■■□□□ 1.52
HOXC11-201ENST00000243082 TERF2IPQ9NYB0 399 aa24.52■■□□□ 1.52
HOXC11-201ENST00000243082 ZNF521Q96K83 1311 aa24.52■■□□□ 1.52
HOXC11-201ENST00000243082 CCDC146Q8IYE0 955 aa24.51■■□□□ 1.51
HOXC11-201ENST00000243082 RCAN3Q9UKA8 241 aa24.51■■□□□ 1.51
HOXC11-201ENST00000243082 C3P01024 1663 aa24.51■■□□□ 1.51
HOXC11-201ENST00000243082 TECPR2O15040 1411 aa24.49■■□□□ 1.51
HOXC11-201ENST00000243082 SIRT1Q96EB6 747 aa24.49■■□□□ 1.51
HOXC11-201ENST00000243082 TSHZ2Q9NRE2 1034 aa24.49■■□□□ 1.51
HOXC11-201ENST00000243082 CABP1Q9NZU7 370 aa24.49■■□□□ 1.51
HOXC11-201ENST00000243082 MTHFSP49914 203 aa24.49■■□□□ 1.51
HOXC11-201ENST00000243082 TXNDC2Q86VQ3 553 aa24.49■■□□□ 1.51
HOXC11-201ENST00000243082 SHPRHQ149N8 1683 aa24.48■■□□□ 1.51
HOXC11-201ENST00000243082 LTKP29376 864 aa24.48■■□□□ 1.51
HOXC11-201ENST00000243082 KNDC1Q76NI1 1749 aa24.48■■□□□ 1.51
HOXC11-201ENST00000243082 ADAMTS13Q76LX8 1427 aa24.48■■□□□ 1.51
HOXC11-201ENST00000243082 FAM135BQ49AJ0 1406 aa24.47■■□□□ 1.51
HOXC11-201ENST00000243082 FER1L4A9Z1Z3 1794 aa24.47■■□□□ 1.51
HOXC11-201ENST00000243082 RRP1P56182 461 aaKnown RBP24.46■■□□□ 1.51
HOXC11-201ENST00000243082 PLEKHG1Q9ULL1 1385 aa24.46■■□□□ 1.51
HOXC11-201ENST00000243082 APAF1O14727 1248 aa24.45■■□□□ 1.51
HOXC11-201ENST00000243082 FYB1O15117 783 aa24.45■■□□□ 1.51
HOXC11-201ENST00000243082 HDGFL2Q7Z4V5 671 aaPredicted RBP24.45■■□□□ 1.51
HOXC11-201ENST00000243082 WASLO00401 505 aaPredicted RBP24.44■■□□□ 1.5
HOXC11-201ENST00000243082 GGNBP2Q9H3C7 697 aa24.44■■□□□ 1.5
HOXC11-201ENST00000243082 CPS1P31327 1500 aa24.44■■□□□ 1.5
HOXC11-201ENST00000243082 MED14O60244 1454 aa24.44■■□□□ 1.5
HOXC11-201ENST00000243082 B4GALNT3Q6L9W6 998 aa24.43■■□□□ 1.5
HOXC11-201ENST00000243082 GOLGA2Q08379 1002 aa24.42■■□□□ 1.5
HOXC11-201ENST00000243082 DUSP27Q5VZP5 1158 aa24.42■■□□□ 1.5
HOXC11-201ENST00000243082 CFAP53Q96M91 514 aa24.42■■□□□ 1.5
HOXC11-201ENST00000243082 ATP7BP35670 1465 aa24.41■■□□□ 1.5
HOXC11-201ENST00000243082 ANKRD26Q9UPS8 1709 aa24.4■■□□□ 1.5
HOXC11-201ENST00000243082 SLIT1O75093 1534 aa24.4■■□□□ 1.5
HOXC11-201ENST00000243082 ARHGAP23Q9P227 1491 aa24.4■■□□□ 1.5
HOXC11-201ENST00000243082 PLPPR3Q6T4P5 718 aa24.4■■□□□ 1.5
HOXC11-201ENST00000243082 NGEFQ8N5V2 710 aa24.4■■□□□ 1.5
HOXC11-201ENST00000243082 ROBO2Q9HCK4 1378 aa24.38■■□□□ 1.49
HOXC11-201ENST00000243082 SLFN5Q08AF3 891 aa24.38■■□□□ 1.49
HOXC11-201ENST00000243082 EID1Q9Y6B2 187 aa24.38■■□□□ 1.49
HOXC11-201ENST00000243082 TRMT2AQ8IZ69 625 aaKnown RBP24.37■■□□□ 1.49
HOXC11-201ENST00000243082 RUNDC1Q96C34 613 aa24.35■■□□□ 1.49
HOXC11-201ENST00000243082 CPSF1Q10570 1443 aaKnown RBP24.35■■□□□ 1.49
HOXC11-201ENST00000243082 PPIP5K1Q6PFW1 1433 aa24.35■■□□□ 1.49
HOXC11-201ENST00000243082 NUDT16Q96DE0 195 aaKnown RBP24.35■■□□□ 1.49
HOXC11-201ENST00000243082 SPINK5Q9NQ38 1064 aaPredicted RBP24.34■■□□□ 1.49
HOXC11-201ENST00000243082 KIF20BQ96Q89 1820 aa24.34■■□□□ 1.49
HOXC11-201ENST00000243082 SLC26A8Q96RN1 970 aa24.34■■□□□ 1.49
HOXC11-201ENST00000243082 THEMISQ8N1K5 641 aaPredicted RBP24.33■■□□□ 1.49
HOXC11-201ENST00000243082 PTPRUQ92729 1446 aa24.33■■□□□ 1.48
HOXC11-201ENST00000243082 COL3A1P02461 1466 aaPredicted RBP24.31■■□□□ 1.48
HOXC11-201ENST00000243082 IQSEC2Q5JU85 1478 aa24.31■■□□□ 1.48
HOXC11-201ENST00000243082 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.31■■□□□ 1.48
HOXC11-201ENST00000243082 CCDC61Q9Y6R9 512 aa24.31■■□□□ 1.48
HOXC11-201ENST00000243082 DMRT2Q9Y5R5 561 aa24.3■■□□□ 1.48
HOXC11-201ENST00000243082 NCKAP5LQ9HCH0 1330 aa24.3■■□□□ 1.48
HOXC11-201ENST00000243082 WWC1Q8IX03 1113 aa24.3■■□□□ 1.48
HOXC11-201ENST00000243082 TBX22Q9Y458 520 aa24.3■■□□□ 1.48
HOXC11-201ENST00000243082 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.29■■□□□ 1.48
HOXC11-201ENST00000243082 EDC4Q6P2E9 1401 aaKnown RBP24.29■■□□□ 1.48
HOXC11-201ENST00000243082 TCP11L2Q8N4U5 519 aa24.29■■□□□ 1.48
HOXC11-201ENST00000243082 E9PSI1 815 aa24.28■■□□□ 1.48
HOXC11-201ENST00000243082 EXOC6Q8TAG9 804 aa24.28■■□□□ 1.48
HOXC11-201ENST00000243082 PRR36Q9H6K5 1346 aa24.28■■□□□ 1.48
HOXC11-201ENST00000243082 ADGRB2O60241 1585 aa24.28■■□□□ 1.48
HOXC11-201ENST00000243082 PLIN1O60240 522 aa24.28■■□□□ 1.48
HOXC11-201ENST00000243082 U2AF1L5P0DN76 240 aaPredicted RBP24.28■■□□□ 1.48
HOXC11-201ENST00000243082 U2AF1Q01081 240 aaKnown RBP eCLIP24.28■■□□□ 1.48
HOXC11-201ENST00000243082 CCDC136Q96JN2 1154 aa24.28■■□□□ 1.48
HOXC11-201ENST00000243082 CDC42BPGQ6DT37 1551 aa24.28■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms