RNA–Protein interactions for RNA: ENST00000230085.12

SNX3-201, Transcript of sorting nexin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX3, Length 1,755 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3-201ENST00000230085 KCNA6P17658 529 aa27.53■■■□□ 2
SNX3-201ENST00000230085 AMOTL2Q9Y2J4 779 aa27.53■■■□□ 2
SNX3-201ENST00000230085 NOP58Q9Y2X3 529 aaKnown RBP27.53■■■□□ 2
SNX3-201ENST00000230085 CHD2O14647 1828 aaKnown RBP27.53■■■□□ 2
SNX3-201ENST00000230085 ASXL1Q8IXJ9 1541 aa27.52■■■□□ 2
SNX3-201ENST00000230085 STRCP1A6NGW2 1772 aa27.52■■■□□ 2
SNX3-201ENST00000230085 STK26Q9P289 416 aa27.5■■□□□ 1.99
SNX3-201ENST00000230085 KIAA1210Q9ULL0 1709 aa27.49■■□□□ 1.99
SNX3-201ENST00000230085 PNISRQ8TF01 805 aaKnown RBP27.49■■□□□ 1.99
SNX3-201ENST00000230085 BRD4O60885 1362 aaPredicted RBP27.49■■□□□ 1.99
SNX3-201ENST00000230085 ADGRB1O14514 1584 aa27.49■■□□□ 1.99
SNX3-201ENST00000230085 TRPM1Q7Z4N2 1603 aa27.49■■□□□ 1.99
SNX3-201ENST00000230085 INSRP06213 1382 aa27.48■■□□□ 1.99
SNX3-201ENST00000230085 YTHDC2Q9H6S0 1430 aaKnown RBP27.46■■□□□ 1.99
SNX3-201ENST00000230085 NWD1Q149M9 1564 aa27.44■■□□□ 1.98
SNX3-201ENST00000230085 LTBP4Q8N2S1 1624 aa27.44■■□□□ 1.98
SNX3-201ENST00000230085 RBM33Q96EV2 1170 aaKnown RBP27.43■■□□□ 1.98
SNX3-201ENST00000230085 XRN1Q8IZH2 1706 aaKnown RBP27.42■■□□□ 1.98
SNX3-201ENST00000230085 TRAK1Q9UPV9 953 aa27.42■■□□□ 1.98
SNX3-201ENST00000230085 ABCC11Q96J66 1382 aa27.41■■□□□ 1.98
SNX3-201ENST00000230085 PROSER2Q86WR7 435 aaPredicted RBP27.4■■□□□ 1.98
SNX3-201ENST00000230085 ROBO2Q9HCK4 1378 aa27.39■■□□□ 1.98
SNX3-201ENST00000230085 RALBP1Q15311 655 aa27.38■■□□□ 1.97
SNX3-201ENST00000230085 CCDC136Q96JN2 1154 aa27.38■■□□□ 1.97
SNX3-201ENST00000230085 IPO9Q96P70 1041 aaKnown RBP27.38■■□□□ 1.97
SNX3-201ENST00000230085 NKTRP30414 1462 aaKnown RBP27.38■■□□□ 1.97
SNX3-201ENST00000230085 CARD11Q9BXL7 1154 aa27.37■■□□□ 1.97
SNX3-201ENST00000230085 CPS1P31327 1500 aa27.37■■□□□ 1.97
SNX3-201ENST00000230085 TECPR2O15040 1411 aa27.37■■□□□ 1.97
SNX3-201ENST00000230085 GPRASP1Q5JY77 1395 aa27.36■■□□□ 1.97
SNX3-201ENST00000230085 WAPLQ7Z5K2 1190 aa27.36■■□□□ 1.97
SNX3-201ENST00000230085 LRRC7Q96NW7 1537 aa27.36■■□□□ 1.97
SNX3-201ENST00000230085 DEKP35659 375 aaKnown RBP27.35■■□□□ 1.97
SNX3-201ENST00000230085 ANP32AP39687 249 aaKnown RBP27.35■■□□□ 1.97
SNX3-201ENST00000230085 PTCH1Q13635 1447 aa27.34■■□□□ 1.97
SNX3-201ENST00000230085 KNDC1Q76NI1 1749 aa27.34■■□□□ 1.97
SNX3-201ENST00000230085 MYBBP1AQ9BQG0 1328 aaKnown RBP27.34■■□□□ 1.97
SNX3-201ENST00000230085 TMEM94Q12767 1356 aa27.34■■□□□ 1.97
SNX3-201ENST00000230085 PRAM1Q96QH2 718 aa27.32■■□□□ 1.96
SNX3-201ENST00000230085 PLEKHH1Q9ULM0 1364 aa27.32■■□□□ 1.96
SNX3-201ENST00000230085 PDE3BQ13370 1112 aa27.32■■□□□ 1.96
SNX3-201ENST00000230085 SAFB2Q14151 953 aaKnown RBP eCLIP27.31■■□□□ 1.96
SNX3-201ENST00000230085 SIRT1Q96EB6 747 aa27.3■■□□□ 1.96
SNX3-201ENST00000230085 XIRP1Q702N8 1843 aaKnown RBP27.29■■□□□ 1.96
SNX3-201ENST00000230085 DLC1Q96QB1 1528 aa27.29■■□□□ 1.96
SNX3-201ENST00000230085 POGKQ9P215 609 aa27.29■■□□□ 1.96
SNX3-201ENST00000230085 ARHGEF28Q8N1W1 1705 aaKnown RBP27.28■■□□□ 1.96
SNX3-201ENST00000230085 FAM135BQ49AJ0 1406 aa27.28■■□□□ 1.96
SNX3-201ENST00000230085 TMC1Q8TDI8 760 aa27.28■■□□□ 1.96
SNX3-201ENST00000230085 PARD3Q8TEW0 1356 aa27.27■■□□□ 1.96
SNX3-201ENST00000230085 C14orf37Q86TY3 774 aa27.27■■□□□ 1.96
SNX3-201ENST00000230085 CERKQ8TCT0 537 aa27.26■■□□□ 1.95
SNX3-201ENST00000230085 TCERG1O14776 1098 aaKnown RBP27.25■■□□□ 1.95
SNX3-201ENST00000230085 PAK3O75914 559 aaPredicted RBP27.25■■□□□ 1.95
SNX3-201ENST00000230085 MS4A1P11836 297 aa27.23■■□□□ 1.95
SNX3-201ENST00000230085 NCOA3Q9Y6Q9 1424 aa27.22■■□□□ 1.95
SNX3-201ENST00000230085 RRP1P56182 461 aaKnown RBP27.22■■□□□ 1.95
SNX3-201ENST00000230085 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.22■■□□□ 1.95
SNX3-201ENST00000230085 CENPJQ9HC77 1338 aaPredicted RBP27.21■■□□□ 1.95
SNX3-201ENST00000230085 C19orf44Q9H6X5 657 aa27.2■■□□□ 1.95
SNX3-201ENST00000230085 EIF3AQ14152 1382 aaKnown RBP27.2■■□□□ 1.94
SNX3-201ENST00000230085 MINK1Q8N4C8 1332 aaPredicted RBP27.19■■□□□ 1.94
SNX3-201ENST00000230085 NALCNQ8IZF0 1738 aa27.19■■□□□ 1.94
SNX3-201ENST00000230085 ZBTB47Q9UFB7 747 aaPredicted RBP27.18■■□□□ 1.94
SNX3-201ENST00000230085 ADGRL3Q9HAR2 1447 aa27.18■■□□□ 1.94
SNX3-201ENST00000230085 MSH6P52701 1360 aa27.18■■□□□ 1.94
SNX3-201ENST00000230085 ST20-MTHFSA0A0A6YYL1 179 aa27.17■■□□□ 1.94
SNX3-201ENST00000230085 NLRP13Q86W25 1043 aa27.17■■□□□ 1.94
SNX3-201ENST00000230085 BLMP54132 1417 aaPredicted RBP27.16■■□□□ 1.94
SNX3-201ENST00000230085 QRICH2Q9H0J4 1663 aa27.14■■□□□ 1.93
SNX3-201ENST00000230085 USP35Q9P2H5 1018 aa27.13■■□□□ 1.93
SNX3-201ENST00000230085 IQSEC2Q5JU85 1478 aa27.12■■□□□ 1.93
SNX3-201ENST00000230085 ATF3P18847 181 aa27.12■■□□□ 1.93
SNX3-201ENST00000230085 RCAN3Q9UKA8 241 aa27.12■■□□□ 1.93
SNX3-201ENST00000230085 CADPS2Q86UW7 1296 aa27.09■■□□□ 1.93
SNX3-201ENST00000230085 TESK2Q96S53 571 aa27.09■■□□□ 1.93
SNX3-201ENST00000230085 NUTM2FA1L443 756 aa27.08■■□□□ 1.93
SNX3-201ENST00000230085 DCCP43146 1447 aa27.08■■□□□ 1.93
SNX3-201ENST00000230085 WASLO00401 505 aaPredicted RBP27.07■■□□□ 1.92
SNX3-201ENST00000230085 PER1O15534 1290 aaPredicted RBP27.06■■□□□ 1.92
SNX3-201ENST00000230085 RTL5Q5HYW3 569 aaPredicted RBP27.06■■□□□ 1.92
SNX3-201ENST00000230085 ADGRB2O60241 1585 aa27.06■■□□□ 1.92
SNX3-201ENST00000230085 CDC42BPGQ6DT37 1551 aa27.06■■□□□ 1.92
SNX3-201ENST00000230085 UBAP1LF5GYI3 381 aa27.05■■□□□ 1.92
SNX3-201ENST00000230085 CDK19Q9BWU1 502 aa27.05■■□□□ 1.92
SNX3-201ENST00000230085 BACH2Q9BYV9 841 aa27.05■■□□□ 1.92
SNX3-201ENST00000230085 TOM1O60784 492 aa27.04■■□□□ 1.92
SNX3-201ENST00000230085 SBNO2Q9Y2G9 1366 aa27.04■■□□□ 1.92
SNX3-201ENST00000230085 SLAIN2Q9P270 581 aa27.04■■□□□ 1.92
SNX3-201ENST00000230085 MST1RQ04912 1400 aa27.01■■□□□ 1.91
SNX3-201ENST00000230085 EVC2Q86UK5 1308 aa27.01■■□□□ 1.91
SNX3-201ENST00000230085 TULP4Q9NRJ4 1543 aa27.01■■□□□ 1.91
SNX3-201ENST00000230085 EXOC6Q8TAG9 804 aa27■■□□□ 1.91
SNX3-201ENST00000230085 CABP2Q9NPB3 220 aa27■■□□□ 1.91
SNX3-201ENST00000230085 FMN2Q9NZ56 1722 aa27■■□□□ 1.91
SNX3-201ENST00000230085 PDE4AP27815 886 aa26.99■■□□□ 1.91
SNX3-201ENST00000230085 SRPK2P78362 688 aaKnown RBP26.99■■□□□ 1.91
SNX3-201ENST00000230085 PIP4K2BP78356 416 aa26.99■■□□□ 1.91
SNX3-201ENST00000230085 NBR1Q14596 966 aa26.99■■□□□ 1.91
SNX3-201ENST00000230085 POLR3GLQ9BT43 218 aa26.99■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms