RNA–Protein interactions for RNA: YKL139W

CTK1, Transcript of Catalytic (alpha) subunit of C-terminal domain kinase I (CTDK-I), yeast

Gene CTK1, Length 1,587 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CTK1	YKL139W	YBR201C-A	Q2V2Q3	67 aa		0.96	□□□□□ -2.26
CTK1	YKL139W	COX7	P10174	60 aa		0.95	□□□□□ -2.26
CTK1	YKL139W	RPL38	P49167	78 aa	Known RBP	0.94	□□□□□ -2.26
CTK1	YKL139W	YBR056W-A	I2HB52	66 aa		0.93	□□□□□ -2.26
CTK1	YKL139W	PDX3	P38075	228 aa	Known RBP	0.93	□□□□□ -2.26
CTK1	YKL139W	NUP188	P52593	1655 aa	Known RBP	0.92	□□□□□ -2.26
CTK1	YKL139W	YMR122W-A	Q3E842	84 aa		0.92	□□□□□ -2.26
CTK1	YKL139W	YAL065C	O13511	128 aa		0.91	□□□□□ -2.26
CTK1	YKL139W	YJR107C-A	P0CT86	78 aa		0.91	□□□□□ -2.26
CTK1	YKL139W	TY1B-DR5	P0C2I2	1755 aa		0.91	□□□□□ -2.26
CTK1	YKL139W	TY1B-DR6	P0C2I3	1755 aa		0.91	□□□□□ -2.26
CTK1	YKL139W	TY1B-LR2	P0C2I5	1755 aa		0.91	□□□□□ -2.26
CTK1	YKL139W	TY1B-LR3	P0C2I6	1755 aa	Known RBP	0.91	□□□□□ -2.26
CTK1	YKL139W	TY1B-PR1	P0C2I9	1755 aa	Known RBP	0.91	□□□□□ -2.26
CTK1	YKL139W	TY1B-PR2	P0C2J0	1756 aa		0.91	□□□□□ -2.26
CTK1	YKL139W	TY1B-PR3	P0C2J1	1755 aa	Known RBP	0.91	□□□□□ -2.26
CTK1	YKL139W	TY2B-LR1	P0C2J3	1770 aa		0.91	□□□□□ -2.26
CTK1	YKL139W	TY2B-F	P0CX63	1770 aa		0.91	□□□□□ -2.26
CTK1	YKL139W	TY2B-GR2	P0CX64	1770 aa		0.91	□□□□□ -2.26
CTK1	YKL139W	TY2B-C	P25384	1770 aa		0.91	□□□□□ -2.26
CTK1	YKL139W	TY1B-JR1	P47098	1755 aa		0.91	□□□□□ -2.26
CTK1	YKL139W	TY1B-ML2	Q03434	1755 aa	Known RBP	0.91	□□□□□ -2.26
CTK1	YKL139W	TY2B-DR2	Q03494	1770 aa		0.91	□□□□□ -2.26
CTK1	YKL139W	TY1B-ER1	Q03612	1755 aa		0.91	□□□□□ -2.26
CTK1	YKL139W	TY1B-DR1	Q03855	1755 aa		0.91	□□□□□ -2.26
CTK1	YKL139W	TY1B-ML1	Q04711	1755 aa	Known RBP	0.91	□□□□□ -2.26
CTK1	YKL139W	TY2B-DR3	Q07791	1770 aa	Known RBP	0.91	□□□□□ -2.26
CTK1	YKL139W	TY2B-OR1	Q12113	1770 aa		0.91	□□□□□ -2.26
CTK1	YKL139W	TY1B-GR2	Q12269	1755 aa		0.91	□□□□□ -2.26
CTK1	YKL139W	TY1B-OL	Q12273	1755 aa		0.91	□□□□□ -2.26
CTK1	YKL139W	TY1B-PL	Q12414	1755 aa	Known RBP	0.91	□□□□□ -2.26
CTK1	YKL139W	TY2B-DR1	Q12472	1770 aa		0.91	□□□□□ -2.26
CTK1	YKL139W	TY2B-OR2	Q12501	1770 aa		0.91	□□□□□ -2.26
CTK1	YKL139W	FPR2	P32472	135 aa		0.91	□□□□□ -2.26
CTK1	YKL139W	PAU23	Q07987	124 aa		0.91	□□□□□ -2.26
CTK1	YKL139W	PAU17	Q12370	124 aa		0.91	□□□□□ -2.26
CTK1	YKL139W	YHR214C-D	P0CX93	97 aa		0.89	□□□□□ -2.27
CTK1	YKL139W	YOR343C	Q12484	108 aa		0.89	□□□□□ -2.27
CTK1	YKL139W	TOM6	P33448	61 aa		0.88	□□□□□ -2.27
CTK1	YKL139W	MLP2	P40457	1679 aa		0.88	□□□□□ -2.27
CTK1	YKL139W	CWP2	P43497	92 aa		0.87	□□□□□ -2.27
CTK1	YKL139W	YBR016W	P38216	128 aa		0.86	□□□□□ -2.27
CTK1	YKL139W	ATP18	P81450	59 aa		0.85	□□□□□ -2.27
CTK1	YKL139W	NOP10	Q6Q547	58 aa	Predicted RBP	0.85	□□□□□ -2.27
CTK1	YKL139W	TY1B-JR2	P47100	1755 aa	Known RBP	0.84	□□□□□ -2.28
CTK1	YKL139W	TY1B-ER2	Q03619	1755 aa		0.84	□□□□□ -2.28
CTK1	YKL139W	TY1B-MR1	Q04214	1755 aa		0.84	□□□□□ -2.28
CTK1	YKL139W	TY1B-MR2	Q04670	1755 aa	Known RBP	0.84	□□□□□ -2.28
CTK1	YKL139W	TY1B-LR1	Q12088	1755 aa	Known RBP	0.84	□□□□□ -2.28
CTK1	YKL139W	TY1B-NL1	Q12112	1755 aa		0.84	□□□□□ -2.28
CTK1	YKL139W	TY1B-GR1	Q12141	1755 aa		0.84	□□□□□ -2.28
CTK1	YKL139W	TY2B-B	Q12491	1770 aa		0.84	□□□□□ -2.28
CTK1	YKL139W	YCR085W	P25650	117 aa		0.83	□□□□□ -2.28
CTK1	YKL139W	POC4	Q12245	148 aa	Predicted RBP	0.83	□□□□□ -2.28
CTK1	YKL139W	RRP5	Q05022	1729 aa	Known RBP	0.83	□□□□□ -2.28
CTK1	YKL139W	YFR009W-A	P0C5M9	85 aa		0.83	□□□□□ -2.28
CTK1	YKL139W	APC1	P53886	1748 aa		0.83	□□□□□ -2.28
CTK1	YKL139W	YIL156W-B	Q2V2P4	73 aa		0.81	□□□□□ -2.28
CTK1	YKL139W	SDH6	Q3E785	79 aa		0.81	□□□□□ -2.28
CTK1	YKL139W	FIG2	P25653	1609 aa		0.81	□□□□□ -2.28
CTK1	YKL139W	YPR145C-A	Q2V2P0	78 aa		0.79	□□□□□ -2.28
CTK1	YKL139W	YOR105W	Q08504	108 aa		0.79	□□□□□ -2.28
CTK1	YKL139W	YKL068W-A	Q3E826	78 aa		0.79	□□□□□ -2.28
CTK1	YKL139W	ECM29	P38737	1868 aa		0.78	□□□□□ -2.29
CTK1	YKL139W	FKS3	Q04952	1785 aa		0.77	□□□□□ -2.29
CTK1	YKL139W	YIL134C-A	Q45U18	67 aa		0.76	□□□□□ -2.29
CTK1	YKL139W	FLO1	P32768	1537 aa		0.75	□□□□□ -2.29
CTK1	YKL139W	ATX1	P38636	73 aa		0.74	□□□□□ -2.29
CTK1	YKL139W	YKL065W-A	Q2V2P2	73 aa		0.74	□□□□□ -2.29
CTK1	YKL139W	TY1B-DR3	Q99231	1755 aa		0.74	□□□□□ -2.29
CTK1	YKL139W	YOR314W	Q12506	109 aa		0.74	□□□□□ -2.29
CTK1	YKL139W	SGF11	Q03067	99 aa		0.72	□□□□□ -2.29
CTK1	YKL139W	YPR108W-A	Q3E7B3	70 aa		0.72	□□□□□ -2.29
CTK1	YKL139W	YOL097W-A	Q3E7Y9	61 aa		0.72	□□□□□ -2.29
CTK1	YKL139W	PDR12	Q02785	1511 aa		0.72	□□□□□ -2.29
CTK1	YKL139W	YDR381C-A	Q3E6R5	114 aa		0.71	□□□□□ -2.3
CTK1	YKL139W	MOT1	P32333	1867 aa		0.71	□□□□□ -2.3
CTK1	YKL139W	UTP10	P42945	1769 aa	Known RBP	0.71	□□□□□ -2.3
CTK1	YKL139W	STT4	P37297	1900 aa		0.71	□□□□□ -2.3
CTK1	YKL139W	HKR1	P41809	1802 aa		0.7	□□□□□ -2.3
CTK1	YKL139W	YDL022C-A	P0C5L6	82 aa		0.68	□□□□□ -2.3
CTK1	YKL139W	YBR032W	P38223	100 aa		0.67	□□□□□ -2.3
CTK1	YKL139W	EDC1	P53080	175 aa	Predicted RBP	0.66	□□□□□ -2.3
CTK1	YKL139W	YDR524C-B	Q3E6R4	66 aa		0.65	□□□□□ -2.31
CTK1	YKL139W	SWM2	P40342	146 aa		0.64	□□□□□ -2.31
CTK1	YKL139W	YGR121W-A	Q3E816	71 aa		0.64	□□□□□ -2.31
CTK1	YKL139W	MLP1	Q02455	1875 aa	Known RBP	0.62	□□□□□ -2.31
CTK1	YKL139W	QCR9	P22289	66 aa		0.62	□□□□□ -2.31
CTK1	YKL139W	YDR119W-A	Q2V2P9	66 aa		0.6	□□□□□ -2.31
CTK1	YKL139W	PMD1	P32634	1753 aa		0.6	□□□□□ -2.31
CTK1	YKL139W	YIL046W-A	Q3E7Z4	54 aa		0.59	□□□□□ -2.31
CTK1	YKL139W	YGR025W	P53216	100 aa		0.58	□□□□□ -2.32
CTK1	YKL139W	BPH1	P25356	2167 aa		0.57	□□□□□ -2.32
CTK1	YKL139W	YGR035W-A	Q45U48	73 aa		0.57	□□□□□ -2.32
CTK1	YKL139W	TIM12	P32830	109 aa		0.53	□□□□□ -2.32
CTK1	YKL139W	ATP17	Q06405	101 aa		0.53	□□□□□ -2.32
CTK1	YKL139W	YBL044W	P38194	122 aa		0.53	□□□□□ -2.33
CTK1	YKL139W	YHR213W-A	Q8TGT4	77 aa		0.53	□□□□□ -2.33
CTK1	YKL139W	YCR108C	Q3E819	63 aa		0.51	□□□□□ -2.33
CTK1	YKL139W	YOR032W-A	Q8TGS1	66 aa		0.49	□□□□□ -2.33

Retrieved 100 of 5,963 RNA–protein pairs in 82.7 ms