RNA–Protein interactions for RNA: YHR088W

RPF1, Transcript of Protein involved in assembly and export of the large ribosomal subunit, yeastyeast

Gene RPF1, Length 888 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPF1YHR088W XRN1P22147 1528 aaKnown RBP-1.28□□□□□ -2.61
RPF1YHR088W PAU23Q07987 124 aa-1.28□□□□□ -2.61
RPF1YHR088W PAU17Q12370 124 aa-1.28□□□□□ -2.61
RPF1YHR088W RPA190P10964 1664 aaKnown RBP-1.29□□□□□ -2.62
RPF1YHR088W YER137CP40083 148 aaKnown RBP-1.29□□□□□ -2.62
RPF1YHR088W TOS6P48560 102 aa-1.29□□□□□ -2.62
RPF1YHR088W SIP18P50263 79 aa-1.29□□□□□ -2.62
RPF1YHR088W YOL097W-AQ3E7Y9 61 aa-1.29□□□□□ -2.62
RPF1YHR088W TOM1Q03280 3268 aa-1.29□□□□□ -2.62
RPF1YHR088W VPS13Q07878 3144 aa-1.29□□□□□ -2.62
RPF1YHR088W MSL1P40567 111 aaPredicted RBP-1.31□□□□□ -2.62
RPF1YHR088W NOP10Q6Q547 58 aaPredicted RBP-1.31□□□□□ -2.62
RPF1YHR088W GDB1Q06625 1536 aa-1.31□□□□□ -2.62
RPF1YHR088W RPS27AP35997 82 aaKnown RBP-1.32□□□□□ -2.62
RPF1YHR088W YKL068W-AQ3E826 78 aa-1.33□□□□□ -2.62
RPF1YHR088W FYV7Q12247 151 aa-1.34□□□□□ -2.62
RPF1YHR088W YIL156W-BQ2V2P4 73 aa-1.34□□□□□ -2.62
RPF1YHR088W MHF2Q3E829 80 aa-1.34□□□□□ -2.62
RPF1YHR088W SCP1Q08873 200 aa-1.35□□□□□ -2.63
RPF1YHR088W COA2Q3E823 68 aa-1.35□□□□□ -2.63
RPF1YHR088W SUS1Q6WNK7 96 aa-1.35□□□□□ -2.63
RPF1YHR088W IRC20Q06554 1556 aa-1.35□□□□□ -2.63
RPF1YHR088W APC1P53886 1748 aa-1.36□□□□□ -2.63
RPF1YHR088W YDR524C-BQ3E6R4 66 aa-1.36□□□□□ -2.63
RPF1YHR088W OLI1P61829 76 aa-1.37□□□□□ -2.63
RPF1YHR088W YDR119W-AQ2V2P9 66 aa-1.37□□□□□ -2.63
RPF1YHR088W YOR072W-BQ3E832 53 aa-1.37□□□□□ -2.63
RPF1YHR088W TY3B-GQ99315 1547 aa-1.37□□□□□ -2.63
RPF1YHR088W KOG1P38873 1557 aa-1.38□□□□□ -2.63
RPF1YHR088W SMC4Q12267 1418 aa-1.38□□□□□ -2.63
RPF1YHR088W YOR343CQ12484 108 aa-1.38□□□□□ -2.63
RPF1YHR088W YLL006W-AQ3E814 58 aa-1.38□□□□□ -2.63
RPF1YHR088W MDS3P53094 1487 aa-1.38□□□□□ -2.63
RPF1YHR088W FIG2P25653 1609 aa-1.39□□□□□ -2.63
RPF1YHR088W YGL258W-AQ3E740 77 aa-1.39□□□□□ -2.63
RPF1YHR088W POC4Q12245 148 aaPredicted RBP-1.4□□□□□ -2.63
RPF1YHR088W VPS15P22219 1454 aa-1.4□□□□□ -2.63
RPF1YHR088W YDL022C-AP0C5L6 82 aa-1.41□□□□□ -2.64
RPF1YHR088W YMR175W-AQ3E766 64 aa-1.41□□□□□ -2.64
RPF1YHR088W LSM2P38203 95 aaKnown RBP-1.42□□□□□ -2.64
RPF1YHR088W PDR10P51533 1564 aa-1.42□□□□□ -2.64
RPF1YHR088W SWR1Q05471 1514 aa-1.43□□□□□ -2.64
RPF1YHR088W YMR082CQ04276 118 aa-1.45□□□□□ -2.64
RPF1YHR088W YOR394C-AQ8TGJ0 55 aa-1.45□□□□□ -2.64
RPF1YHR088W ATP17Q06405 101 aa-1.46□□□□□ -2.64
RPF1YHR088W YBR200W-AQ3E755 54 aa-1.46□□□□□ -2.64
RPF1YHR088W Q0017Q9ZZX8 53 aa-1.47□□□□□ -2.64
RPF1YHR088W YLR146W-AQ2V2P1 62 aa-1.48□□□□□ -2.65
RPF1YHR088W SIN3P22579 1536 aa-1.49□□□□□ -2.65
RPF1YHR088W YOR105WQ08504 108 aa-1.49□□□□□ -2.65
RPF1YHR088W YMR105W-AQ8TGS8 64 aa-1.49□□□□□ -2.65
RPF1YHR088W FKS3Q04952 1785 aa-1.49□□□□□ -2.65
RPF1YHR088W HAP1P0CE41 1502 aa-1.5□□□□□ -2.65
RPF1YHR088W YPL225WQ08971 146 aaKnown RBP-1.5□□□□□ -2.65
RPF1YHR088W YOR192C-CQ3E736 78 aa-1.51□□□□□ -2.65
RPF1YHR088W RPS27BP38711 82 aa-1.52□□□□□ -2.65
RPF1YHR088W YOR011W-AQ3E807 68 aa-1.52□□□□□ -2.65
RPF1YHR088W YGR146C-AQ8TGT9 53 aa-1.52□□□□□ -2.65
RPF1YHR088W THO2P53552 1597 aaKnown RBP-1.53□□□□□ -2.65
RPF1YHR088W YKL065W-AQ2V2P2 73 aa-1.53□□□□□ -2.65
RPF1YHR088W YBL039W-BP0C268 59 aa-1.54□□□□□ -2.66
RPF1YHR088W YOR314WQ12506 109 aa-1.54□□□□□ -2.66
RPF1YHR088W YPR145C-AQ2V2P0 78 aa-1.54□□□□□ -2.66
RPF1YHR088W YCR075W-AQ3E830 75 aa-1.54□□□□□ -2.66
RPF1YHR088W YOR032W-AQ8TGS1 66 aa-1.56□□□□□ -2.66
RPF1YHR088W YCL001W-BQ96VH2 84 aa-1.56□□□□□ -2.66
RPF1YHR088W TY1B-DR4Q07793 1604 aa-1.56□□□□□ -2.66
RPF1YHR088W DNF1P32660 1571 aa-1.58□□□□□ -2.66
RPF1YHR088W ZEO1Q08245 113 aa-1.58□□□□□ -2.66
RPF1YHR088W YML054C-AQ3E809 52 aa-1.58□□□□□ -2.66
RPF1YHR088W YGR121W-AQ3E816 71 aa-1.58□□□□□ -2.66
RPF1YHR088W YGR035W-AQ45U48 73 aa-1.6□□□□□ -2.67
RPF1YHR088W YSP2Q06681 1438 aa-1.6□□□□□ -2.67
RPF1YHR088W YBR230W-AQ3E762 66 aa-1.61□□□□□ -2.67
RPF1YHR088W QCR9P22289 66 aa-1.62□□□□□ -2.67
RPF1YHR088W MMS22Q06164 1454 aa-1.64□□□□□ -2.67
RPF1YHR088W MLP1Q02455 1875 aaKnown RBP-1.65□□□□□ -2.67
RPF1YHR088W YGL194C-AQ2V2P6 80 aa-1.65□□□□□ -2.67
RPF1YHR088W YHR073W-AP0C5N7 58 aa-1.66□□□□□ -2.68
RPF1YHR088W SWM2P40342 146 aa-1.66□□□□□ -2.68
RPF1YHR088W CWP2P43497 92 aa-1.66□□□□□ -2.68
RPF1YHR088W PDR12Q02785 1511 aa-1.66□□□□□ -2.68
RPF1YHR088W RPL29P05747 59 aaPredicted RBP-1.67□□□□□ -2.68
RPF1YHR088W TIM12P32830 109 aa-1.67□□□□□ -2.68
RPF1YHR088W SPI1P40092 148 aa-1.67□□□□□ -2.68
RPF1YHR088W SNQ2P32568 1501 aaKnown RBP-1.67□□□□□ -2.68
RPF1YHR088W DNF2Q12675 1612 aa-1.69□□□□□ -2.68
RPF1YHR088W SSS1P35179 80 aa-1.69□□□□□ -2.68
RPF1YHR088W ESP1Q03018 1630 aa-1.69□□□□□ -2.68
RPF1YHR088W YOR093CQ12275 1648 aa-1.69□□□□□ -2.68
RPF1YHR088W PDR15Q04182 1529 aaKnown RBP-1.7□□□□□ -2.68
RPF1YHR088W LTE1P07866 1435 aa-1.7□□□□□ -2.68
RPF1YHR088W YDR034C-AP0C289 58 aa-1.7□□□□□ -2.68
RPF1YHR088W PAU7P39545 55 aa-1.7□□□□□ -2.68
RPF1YHR088W HUB1Q6Q546 73 aa-1.7□□□□□ -2.68
RPF1YHR088W ULS1Q08562 1619 aa-1.7□□□□□ -2.68
RPF1YHR088W ARO1P08566 1588 aaKnown RBP-1.71□□□□□ -2.68
RPF1YHR088W BCK1Q01389 1478 aa-1.72□□□□□ -2.68
RPF1YHR088W ESC1Q03661 1658 aaKnown RBP-1.72□□□□□ -2.68
RPF1YHR088W FLO1P32768 1537 aa-1.72□□□□□ -2.69
Retrieved 100 of 5,963 RNA–protein pairs in 16.5 ms