RNA–Protein interactions for RNA: YHR088W

RPF1, Transcript of Protein involved in assembly and export of the large ribosomal subunit, yeastyeast

Gene RPF1, Length 888 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPF1YHR088W XRN1P22147 1528 aaKnown RBP-1.28□□□□□ -2.61
RPF1YHR088W PAU23Q07987 124 aa-1.28□□□□□ -2.61
RPF1YHR088W PAU17Q12370 124 aa-1.28□□□□□ -2.61
RPF1YHR088W RPA190P10964 1664 aaKnown RBP-1.29□□□□□ -2.62
RPF1YHR088W YER137CP40083 148 aaKnown RBP-1.29□□□□□ -2.62
RPF1YHR088W TOS6P48560 102 aa-1.29□□□□□ -2.62
RPF1YHR088W SIP18P50263 79 aa-1.29□□□□□ -2.62
RPF1YHR088W YOL097W-AQ3E7Y9 61 aa-1.29□□□□□ -2.62
RPF1YHR088W TOM1Q03280 3268 aa-1.29□□□□□ -2.62
RPF1YHR088W VPS13Q07878 3144 aa-1.29□□□□□ -2.62
RPF1YHR088W MSL1P40567 111 aaPredicted RBP-1.31□□□□□ -2.62
RPF1YHR088W NOP10Q6Q547 58 aaPredicted RBP-1.31□□□□□ -2.62
RPF1YHR088W GDB1Q06625 1536 aa-1.31□□□□□ -2.62
RPF1YHR088W RPS27AP35997 82 aaKnown RBP-1.32□□□□□ -2.62
RPF1YHR088W YKL068W-AQ3E826 78 aa-1.33□□□□□ -2.62
RPF1YHR088W FYV7Q12247 151 aa-1.34□□□□□ -2.62
RPF1YHR088W YIL156W-BQ2V2P4 73 aa-1.34□□□□□ -2.62
RPF1YHR088W MHF2Q3E829 80 aa-1.34□□□□□ -2.62
RPF1YHR088W SCP1Q08873 200 aa-1.35□□□□□ -2.63
RPF1YHR088W COA2Q3E823 68 aa-1.35□□□□□ -2.63
RPF1YHR088W SUS1Q6WNK7 96 aa-1.35□□□□□ -2.63
RPF1YHR088W IRC20Q06554 1556 aa-1.35□□□□□ -2.63
RPF1YHR088W APC1P53886 1748 aa-1.36□□□□□ -2.63
RPF1YHR088W YDR524C-BQ3E6R4 66 aa-1.36□□□□□ -2.63
RPF1YHR088W OLI1P61829 76 aa-1.37□□□□□ -2.63
RPF1YHR088W YDR119W-AQ2V2P9 66 aa-1.37□□□□□ -2.63
RPF1YHR088W YOR072W-BQ3E832 53 aa-1.37□□□□□ -2.63
RPF1YHR088W TY3B-GQ99315 1547 aa-1.37□□□□□ -2.63
RPF1YHR088W KOG1P38873 1557 aa-1.38□□□□□ -2.63
RPF1YHR088W SMC4Q12267 1418 aa-1.38□□□□□ -2.63
RPF1YHR088W YOR343CQ12484 108 aa-1.38□□□□□ -2.63
RPF1YHR088W YLL006W-AQ3E814 58 aa-1.38□□□□□ -2.63
RPF1YHR088W MDS3P53094 1487 aa-1.38□□□□□ -2.63
RPF1YHR088W FIG2P25653 1609 aa-1.39□□□□□ -2.63
RPF1YHR088W YGL258W-AQ3E740 77 aa-1.39□□□□□ -2.63
RPF1YHR088W POC4Q12245 148 aaPredicted RBP-1.4□□□□□ -2.63
RPF1YHR088W VPS15P22219 1454 aa-1.4□□□□□ -2.63
RPF1YHR088W YDL022C-AP0C5L6 82 aa-1.41□□□□□ -2.64
RPF1YHR088W YMR175W-AQ3E766 64 aa-1.41□□□□□ -2.64
RPF1YHR088W LSM2P38203 95 aaKnown RBP-1.42□□□□□ -2.64
RPF1YHR088W PDR10P51533 1564 aa-1.42□□□□□ -2.64
RPF1YHR088W SWR1Q05471 1514 aa-1.43□□□□□ -2.64
RPF1YHR088W YMR082CQ04276 118 aa-1.45□□□□□ -2.64
RPF1YHR088W YOR394C-AQ8TGJ0 55 aa-1.45□□□□□ -2.64
RPF1YHR088W ATP17Q06405 101 aa-1.46□□□□□ -2.64
RPF1YHR088W YBR200W-AQ3E755 54 aa-1.46□□□□□ -2.64
RPF1YHR088W Q0017Q9ZZX8 53 aa-1.47□□□□□ -2.64
RPF1YHR088W YLR146W-AQ2V2P1 62 aa-1.48□□□□□ -2.65
RPF1YHR088W SIN3P22579 1536 aa-1.49□□□□□ -2.65
RPF1YHR088W YOR105WQ08504 108 aa-1.49□□□□□ -2.65
RPF1YHR088W YMR105W-AQ8TGS8 64 aa-1.49□□□□□ -2.65
RPF1YHR088W FKS3Q04952 1785 aa-1.49□□□□□ -2.65
RPF1YHR088W HAP1P0CE41 1502 aa-1.5□□□□□ -2.65
RPF1YHR088W YPL225WQ08971 146 aaKnown RBP-1.5□□□□□ -2.65
RPF1YHR088W YOR192C-CQ3E736 78 aa-1.51□□□□□ -2.65
RPF1YHR088W RPS27BP38711 82 aa-1.52□□□□□ -2.65
RPF1YHR088W YOR011W-AQ3E807 68 aa-1.52□□□□□ -2.65
RPF1YHR088W YGR146C-AQ8TGT9 53 aa-1.52□□□□□ -2.65
RPF1YHR088W THO2P53552 1597 aaKnown RBP-1.53□□□□□ -2.65
RPF1YHR088W YKL065W-AQ2V2P2 73 aa-1.53□□□□□ -2.65
RPF1YHR088W YBL039W-BP0C268 59 aa-1.54□□□□□ -2.66
RPF1YHR088W YOR314WQ12506 109 aa-1.54□□□□□ -2.66
RPF1YHR088W YPR145C-AQ2V2P0 78 aa-1.54□□□□□ -2.66
RPF1YHR088W YCR075W-AQ3E830 75 aa-1.54□□□□□ -2.66
RPF1YHR088W YOR032W-AQ8TGS1 66 aa-1.56□□□□□ -2.66
RPF1YHR088W YCL001W-BQ96VH2 84 aa-1.56□□□□□ -2.66
RPF1YHR088W TY1B-DR4Q07793 1604 aa-1.56□□□□□ -2.66
RPF1YHR088W DNF1P32660 1571 aa-1.58□□□□□ -2.66
RPF1YHR088W ZEO1Q08245 113 aa-1.58□□□□□ -2.66
RPF1YHR088W YML054C-AQ3E809 52 aa-1.58□□□□□ -2.66
RPF1YHR088W YGR121W-AQ3E816 71 aa-1.58□□□□□ -2.66
RPF1YHR088W YGR035W-AQ45U48 73 aa-1.6□□□□□ -2.67
RPF1YHR088W YSP2Q06681 1438 aa-1.6□□□□□ -2.67
RPF1YHR088W YBR230W-AQ3E762 66 aa-1.61□□□□□ -2.67
RPF1YHR088W QCR9P22289 66 aa-1.62□□□□□ -2.67
RPF1YHR088W MMS22Q06164 1454 aa-1.64□□□□□ -2.67
RPF1YHR088W MLP1Q02455 1875 aaKnown RBP-1.65□□□□□ -2.67
RPF1YHR088W YGL194C-AQ2V2P6 80 aa-1.65□□□□□ -2.67
RPF1YHR088W YHR073W-AP0C5N7 58 aa-1.66□□□□□ -2.68
RPF1YHR088W SWM2P40342 146 aa-1.66□□□□□ -2.68
RPF1YHR088W CWP2P43497 92 aa-1.66□□□□□ -2.68
RPF1YHR088W PDR12Q02785 1511 aa-1.66□□□□□ -2.68
RPF1YHR088W RPL29P05747 59 aaPredicted RBP-1.67□□□□□ -2.68
RPF1YHR088W TIM12P32830 109 aa-1.67□□□□□ -2.68
RPF1YHR088W SPI1P40092 148 aa-1.67□□□□□ -2.68
RPF1YHR088W SNQ2P32568 1501 aaKnown RBP-1.67□□□□□ -2.68
RPF1YHR088W DNF2Q12675 1612 aa-1.69□□□□□ -2.68
RPF1YHR088W SSS1P35179 80 aa-1.69□□□□□ -2.68
RPF1YHR088W ESP1Q03018 1630 aa-1.69□□□□□ -2.68
RPF1YHR088W YOR093CQ12275 1648 aa-1.69□□□□□ -2.68
RPF1YHR088W PDR15Q04182 1529 aaKnown RBP-1.7□□□□□ -2.68
RPF1YHR088W LTE1P07866 1435 aa-1.7□□□□□ -2.68
RPF1YHR088W YDR034C-AP0C289 58 aa-1.7□□□□□ -2.68
RPF1YHR088W PAU7P39545 55 aa-1.7□□□□□ -2.68
RPF1YHR088W HUB1Q6Q546 73 aa-1.7□□□□□ -2.68
RPF1YHR088W ULS1Q08562 1619 aa-1.7□□□□□ -2.68
RPF1YHR088W ARO1P08566 1588 aaKnown RBP-1.71□□□□□ -2.68
RPF1YHR088W BCK1Q01389 1478 aa-1.72□□□□□ -2.68
RPF1YHR088W ESC1Q03661 1658 aaKnown RBP-1.72□□□□□ -2.68
RPF1YHR088W FLO1P32768 1537 aa-1.72□□□□□ -2.69
Retrieved 100 of 5,963 RNA–protein pairs in 6.8 ms