RNA–Protein interactions for RNA: Q0140

VAR1, Transcript of Mitochondrial ribosomal protein of the small subunit, yeastyeast

Gene VAR1, Length 1,197 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VAR1Q0140 OLI1P61829 76 aa-5.54□□□□□ -3.3
VAR1Q0140 POC4Q12245 148 aaPredicted RBP-5.54□□□□□ -3.3
VAR1Q0140 TSC11P40061 1430 aa-5.57□□□□□ -3.3
VAR1Q0140 SMC4Q12267 1418 aa-5.57□□□□□ -3.3
VAR1Q0140 REV3P14284 1504 aa-5.59□□□□□ -3.3
VAR1Q0140 RPS12P48589 143 aaKnown RBP-5.61□□□□□ -3.31
VAR1Q0140 SUS1Q6WNK7 96 aa-5.61□□□□□ -3.31
VAR1Q0140 GEA2P39993 1459 aaKnown RBP-5.63□□□□□ -3.31
VAR1Q0140 YIL156W-BQ2V2P4 73 aa-5.63□□□□□ -3.31
VAR1Q0140 MSL1P40567 111 aaPredicted RBP-5.64□□□□□ -3.31
VAR1Q0140 LSM2P38203 95 aaKnown RBP-5.65□□□□□ -3.31
VAR1Q0140 YDR042CQ03205 200 aa-5.65□□□□□ -3.31
VAR1Q0140 SCP1Q08873 200 aa-5.66□□□□□ -3.32
VAR1Q0140 IRC20Q06554 1556 aa-5.67□□□□□ -3.32
VAR1Q0140 GDB1Q06625 1536 aa-5.7□□□□□ -3.32
VAR1Q0140 APC1P53886 1748 aa-5.74□□□□□ -3.33
VAR1Q0140 YOR394C-AQ8TGJ0 55 aa-5.79□□□□□ -3.34
VAR1Q0140 YLR146W-AQ2V2P1 62 aa-5.83□□□□□ -3.34
VAR1Q0140 YOR343CQ12484 108 aa-5.86□□□□□ -3.35
VAR1Q0140 YER137CP40083 148 aaKnown RBP-5.89□□□□□ -3.35
VAR1Q0140 YBR200W-AQ3E755 54 aa-5.89□□□□□ -3.35
VAR1Q0140 YDL022C-AP0C5L6 82 aa-5.9□□□□□ -3.35
VAR1Q0140 YOR105WQ08504 108 aa-5.93□□□□□ -3.36
VAR1Q0140 YLL006W-AQ3E814 58 aa-5.96□□□□□ -3.36
VAR1Q0140 SWR1Q05471 1514 aa-5.97□□□□□ -3.37
VAR1Q0140 KOG1P38873 1557 aa-5.99□□□□□ -3.37
VAR1Q0140 YDR524C-BQ3E6R4 66 aa-6.01□□□□□ -3.37
VAR1Q0140 TY3B-GQ99315 1547 aa-6.01□□□□□ -3.37
VAR1Q0140 YOR011W-AQ3E807 68 aa-6.02□□□□□ -3.37
VAR1Q0140 COA2Q3E823 68 aa-6.05□□□□□ -3.38
VAR1Q0140 ATP17Q06405 101 aa-6.12□□□□□ -3.39
VAR1Q0140 YGL258W-AQ3E740 77 aa-6.15□□□□□ -3.39
VAR1Q0140 YOR314WQ12506 109 aa-6.16□□□□□ -3.4
VAR1Q0140 YBL039W-BP0C268 59 aa-6.17□□□□□ -3.4
VAR1Q0140 YDR119W-AQ2V2P9 66 aa-6.17□□□□□ -3.4
VAR1Q0140 YPL225WQ08971 146 aaKnown RBP-6.18□□□□□ -3.4
VAR1Q0140 YKL065W-AQ2V2P2 73 aa-6.19□□□□□ -3.4
VAR1Q0140 NUM1Q00402 2748 aa-6.19□□□□□ -3.4
VAR1Q0140 YMR175W-AQ3E766 64 aa-6.21□□□□□ -3.4
VAR1Q0140 SIN3P22579 1536 aa-6.24□□□□□ -3.41
VAR1Q0140 RPS27BP38711 82 aa-6.25□□□□□ -3.41
VAR1Q0140 HAP1P0CE41 1502 aa-6.3□□□□□ -3.42
VAR1Q0140 YCL001W-BQ96VH2 84 aa-6.31□□□□□ -3.42
VAR1Q0140 PDR10P51533 1564 aa-6.31□□□□□ -3.42
VAR1Q0140 MDS3P53094 1487 aa-6.36□□□□□ -3.43
VAR1Q0140 YMR082CQ04276 118 aa-6.37□□□□□ -3.43
VAR1Q0140 YGR146C-AQ8TGT9 53 aa-6.42□□□□□ -3.44
VAR1Q0140 YPR145C-AQ2V2P0 78 aa-6.43□□□□□ -3.44
VAR1Q0140 YOR032W-AQ8TGS1 66 aa-6.46□□□□□ -3.44
VAR1Q0140 VPS15P22219 1454 aa-6.47□□□□□ -3.45
VAR1Q0140 CUP1-1P0CX80 61 aa-6.5□□□□□ -3.45
VAR1Q0140 CUP1-2P0CX81 61 aa-6.5□□□□□ -3.45
VAR1Q0140 YOR072W-BQ3E832 53 aa-6.52□□□□□ -3.45
VAR1Q0140 QCR9P22289 66 aa-6.55□□□□□ -3.46
VAR1Q0140 YGR121W-AQ3E816 71 aa-6.56□□□□□ -3.46
VAR1Q0140 YGR035W-AQ45U48 73 aa-6.61□□□□□ -3.47
VAR1Q0140 ZEO1Q08245 113 aa-6.69□□□□□ -3.48
VAR1Q0140 YCR075W-AQ3E830 75 aa-6.7□□□□□ -3.48
VAR1Q0140 SWM2P40342 146 aa-6.71□□□□□ -3.48
VAR1Q0140 MMS22Q06164 1454 aa-6.73□□□□□ -3.49
VAR1Q0140 YBR230W-AQ3E762 66 aa-6.75□□□□□ -3.49
VAR1Q0140 PAU7P39545 55 aa-6.77□□□□□ -3.49
VAR1Q0140 FKS3Q04952 1785 aa-6.79□□□□□ -3.5
VAR1Q0140 SSS1P35179 80 aa-6.79□□□□□ -3.5
VAR1Q0140 CSF1Q12150 2958 aa-6.86□□□□□ -3.51
VAR1Q0140 CWP2P43497 92 aa-6.88□□□□□ -3.51
VAR1Q0140 HUB1Q6Q546 73 aa-6.88□□□□□ -3.51
VAR1Q0140 FIG2P25653 1609 aa-6.9□□□□□ -3.51
VAR1Q0140 MLP1Q02455 1875 aaKnown RBP-6.92□□□□□ -3.52
VAR1Q0140 IRA1P18963 3092 aa-6.95□□□□□ -3.52
VAR1Q0140 YGL194C-AQ2V2P6 80 aa-6.99□□□□□ -3.53
VAR1Q0140 YSP2Q06681 1438 aa-7□□□□□ -3.53
VAR1Q0140 SPI1P40092 148 aa-7.01□□□□□ -3.53
VAR1Q0140 LTE1P07866 1435 aa-7.01□□□□□ -3.53
VAR1Q0140 Q0017Q9ZZX8 53 aa-7.03□□□□□ -3.53
VAR1Q0140 TIM12P32830 109 aa-7.05□□□□□ -3.54
VAR1Q0140 ARO1P08566 1588 aaKnown RBP-7.22□□□□□ -3.57
VAR1Q0140 YOR192C-CQ3E736 78 aa-7.24□□□□□ -3.57
VAR1Q0140 DNF1P32660 1571 aa-7.27□□□□□ -3.57
VAR1Q0140 ERI1P62651 68 aaKnown RBP-7.28□□□□□ -3.57
VAR1Q0140 IRA2P19158 3079 aa-7.29□□□□□ -3.58
VAR1Q0140 TRA1P38811 3744 aa-7.31□□□□□ -3.58
VAR1Q0140 THO2P53552 1597 aaKnown RBP-7.35□□□□□ -3.59
VAR1Q0140 ESP1Q03018 1630 aa-7.35□□□□□ -3.59
VAR1Q0140 ESC1Q03661 1658 aaKnown RBP-7.36□□□□□ -3.59
VAR1Q0140 PDR12Q02785 1511 aa-7.37□□□□□ -3.59
VAR1Q0140 RPS30AP0CX33 63 aaKnown RBP-7.38□□□□□ -3.59
VAR1Q0140 RPS30BP0CX34 63 aaKnown RBP-7.38□□□□□ -3.59
VAR1Q0140 YLR157W-DP0CE99 70 aa-7.43□□□□□ -3.6
VAR1Q0140 DNF2Q12675 1612 aa-7.46□□□□□ -3.6
VAR1Q0140 IQG1Q12280 1495 aa-7.48□□□□□ -3.61
VAR1Q0140 SNQ2P32568 1501 aaKnown RBP-7.5□□□□□ -3.61
VAR1Q0140 RRP5Q05022 1729 aaKnown RBP-7.51□□□□□ -3.61
VAR1Q0140 PDR15Q04182 1529 aaKnown RBP-7.57□□□□□ -3.62
VAR1Q0140 YML054C-AQ3E809 52 aa-7.63□□□□□ -3.63
VAR1Q0140 YOL131WQ08270 108 aa-7.64□□□□□ -3.63
VAR1Q0140 IML1P47170 1584 aa-7.67□□□□□ -3.64
VAR1Q0140 UFD4P33202 1483 aa-7.73□□□□□ -3.65
VAR1Q0140 TY1B-DR4Q07793 1604 aa-7.73□□□□□ -3.65
VAR1Q0140 YOR093CQ12275 1648 aa-7.77□□□□□ -3.65
Retrieved 100 of 5,963 RNA–protein pairs in 28.3 ms