RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 DGLUCYQ7Z3D6 616 aa0.75□□□□□ -2.29
VPS35-212ENST00000640313 USP37Q86T82 979 aa0.75□□□□□ -2.29
VPS35-212ENST00000640313 MORC1Q86VD1 984 aa0.75□□□□□ -2.29
VPS35-212ENST00000640313 CMIPQ8IY22 773 aa0.75□□□□□ -2.29
VPS35-212ENST00000640313 TMEM199Q8N511 208 aa0.75□□□□□ -2.29
VPS35-212ENST00000640313 SIRT6Q8N6T7 355 aa0.75□□□□□ -2.29
VPS35-212ENST00000640313 SLC44A5Q8NCS7 719 aa0.75□□□□□ -2.29
VPS35-212ENST00000640313 TGFBRAP1Q8WUH2 860 aa0.75□□□□□ -2.29
VPS35-212ENST00000640313 ANKRD9Q96BM1 317 aaPredicted RBP0.75□□□□□ -2.29
VPS35-212ENST00000640313 MSI2Q96DH6 328 aaKnown RBP0.75□□□□□ -2.29
VPS35-212ENST00000640313 MFSD3Q96ES6 412 aa0.75□□□□□ -2.29
VPS35-212ENST00000640313 DMRTA2Q96SC8 542 aa0.75□□□□□ -2.29
VPS35-212ENST00000640313 DPCDQ9BVM2 203 aaPredicted RBP0.75□□□□□ -2.29
VPS35-212ENST00000640313 SEZ6LQ9BYH1 1024 aa0.75□□□□□ -2.29
VPS35-212ENST00000640313 TANGO6Q9C0B7 1094 aa0.75□□□□□ -2.29
VPS35-212ENST00000640313 GFRA4Q9GZZ7 299 aa0.75□□□□□ -2.29
VPS35-212ENST00000640313 PIF1Q9H611 641 aa0.75□□□□□ -2.29
VPS35-212ENST00000640313 FZD3Q9NPG1 666 aa0.75□□□□□ -2.29
VPS35-212ENST00000640313 HIF1ANQ9NWT6 349 aa0.75□□□□□ -2.29
VPS35-212ENST00000640313 INTUQ9ULD6 942 aa0.75□□□□□ -2.29
VPS35-212ENST00000640313 MAGED2Q9UNF1 606 aaPredicted RBP0.75□□□□□ -2.29
VPS35-212ENST00000640313 TRBV5-3A0A0A0MS03 114 aa0.74□□□□□ -2.29
VPS35-212ENST00000640313 C2CD4BA6NLJ0 364 aa0.74□□□□□ -2.29
VPS35-212ENST00000640313 NT5C1B-RDH14C9J2C7 533 aa0.74□□□□□ -2.29
VPS35-212ENST00000640313 ZEB2O60315 1214 aa0.74□□□□□ -2.29
VPS35-212ENST00000640313 ASMTLO95671 621 aa0.74□□□□□ -2.29
VPS35-212ENST00000640313 GNAI3P08754 354 aa0.74□□□□□ -2.29
VPS35-212ENST00000640313 RARBP10826 455 aa0.74□□□□□ -2.29
VPS35-212ENST00000640313 ATP2B1P20020 1258 aa0.74□□□□□ -2.29
VPS35-212ENST00000640313 TACR3P29371 465 aa0.74□□□□□ -2.29
VPS35-212ENST00000640313 GPR3P46089 330 aa0.74□□□□□ -2.29
VPS35-212ENST00000640313 RFX2P48378 723 aa0.74□□□□□ -2.29
VPS35-212ENST00000640313 PXNP49023 591 aaPredicted RBP0.74□□□□□ -2.29
VPS35-212ENST00000640313 COPB1P53618 953 aaKnown RBP0.74□□□□□ -2.29
VPS35-212ENST00000640313 ERVK11-1P61568 191 aa0.74□□□□□ -2.29
VPS35-212ENST00000640313 YPEL5P62699 121 aa0.74□□□□□ -2.29
VPS35-212ENST00000640313 GNAI1P63096 354 aa0.74□□□□□ -2.29
VPS35-212ENST00000640313 SRSF2Q01130 221 aaKnown RBP0.74□□□□□ -2.29
VPS35-212ENST00000640313 KIF5AQ12840 1032 aa0.74□□□□□ -2.29
VPS35-212ENST00000640313 SLC1A5Q15758 541 aa0.74□□□□□ -2.29
VPS35-212ENST00000640313 ODF3L2Q3SX64 289 aa0.74□□□□□ -2.29
VPS35-212ENST00000640313 FAM160B1Q5W0V3 765 aa0.74□□□□□ -2.29
VPS35-212ENST00000640313 PMS2CLQ68D20 193 aa0.74□□□□□ -2.29
VPS35-212ENST00000640313 CNNM4Q6P4Q7 775 aa0.74□□□□□ -2.29
VPS35-212ENST00000640313 GADL1Q6ZQY3 521 aa0.74□□□□□ -2.29
VPS35-212ENST00000640313 DCDC5Q6ZRR9 648 aa0.74□□□□□ -2.29
VPS35-212ENST00000640313 FAM83HQ6ZRV2 1179 aaPredicted RBP0.74□□□□□ -2.29
VPS35-212ENST00000640313 FAM57BQ71RH2 274 aa0.74□□□□□ -2.29
VPS35-212ENST00000640313 C16orf82Q7Z2V1 217 aa0.74□□□□□ -2.29
VPS35-212ENST00000640313 ARMC9Q7Z3E5 817 aa0.74□□□□□ -2.29
VPS35-212ENST00000640313 CAND1Q86VP6 1230 aaKnown RBP0.74□□□□□ -2.29
VPS35-212ENST00000640313 JAZF1Q86VZ6 243 aa0.74□□□□□ -2.29
VPS35-212ENST00000640313 C16orf71Q8IYS4 520 aaPredicted RBP0.74□□□□□ -2.29
VPS35-212ENST00000640313 RFLNBQ8N5W9 214 aa0.74□□□□□ -2.29
VPS35-212ENST00000640313 ABCF1Q8NE71 845 aaKnown RBP eCLIP0.74□□□□□ -2.29
VPS35-212ENST00000640313 NRG4Q8WWG1 115 aa0.74□□□□□ -2.29
VPS35-212ENST00000640313 SREK1Q8WXA9 508 aaKnown RBP0.74□□□□□ -2.29
VPS35-212ENST00000640313 NINJ1Q92982 152 aa0.74□□□□□ -2.29
VPS35-212ENST00000640313 ZNF414Q96IQ9 312 aa0.74□□□□□ -2.29
VPS35-212ENST00000640313 PRR25Q96S07 402 aa0.74□□□□□ -2.29
VPS35-212ENST00000640313 NODALQ96S42 347 aa0.74□□□□□ -2.29
VPS35-212ENST00000640313 OSBPL2Q9H1P3 480 aa0.74□□□□□ -2.29
VPS35-212ENST00000640313 MAN1C1Q9NR34 630 aa0.74□□□□□ -2.29
VPS35-212ENST00000640313 ZNF277Q9NRM2 450 aaPredicted RBP0.74□□□□□ -2.29
VPS35-212ENST00000640313 GNL3LQ9NVN8 582 aaKnown RBP0.74□□□□□ -2.29
VPS35-212ENST00000640313 DNAJC28Q9NX36 388 aa0.74□□□□□ -2.29
VPS35-212ENST00000640313 MSRB1Q9NZV6 116 aa0.74□□□□□ -2.29
VPS35-212ENST00000640313 HESX1Q9UBX0 185 aa0.74□□□□□ -2.29
VPS35-212ENST00000640313 NIPSNAP3AQ9UFN0 247 aaPredicted RBP0.74□□□□□ -2.29
VPS35-212ENST00000640313 NDRG4Q9ULP0 352 aaKnown RBP0.74□□□□□ -2.29
VPS35-212ENST00000640313 COG5Q9UP83 839 aa0.74□□□□□ -2.29
VPS35-212ENST00000640313 DTX4Q9Y2E6 619 aa0.74□□□□□ -2.29
VPS35-212ENST00000640313 PCDHA13Q9Y5I0 950 aa0.74□□□□□ -2.29
VPS35-212ENST00000640313 KLF2Q9Y5W3 355 aaPredicted RBP0.74□□□□□ -2.29
VPS35-212ENST00000640313 FER1L4A9Z1Z3 1794 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 A0A0G2JK05 382 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 M0R3H8 397 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 BMPR1BO00238 502 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 CES2O00748 559 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 DCLK1O15075 740 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 RTL8CO15255 209 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 INPPL1O15357 1258 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 SLC16A5O15375 505 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 PRPF4O43172 522 aaKnown RBP eCLIP0.73□□□□□ -2.29
VPS35-212ENST00000640313 KCNQ3O43525 872 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 USP12O75317 370 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 PMPCBO75439 489 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 CSF1RP07333 972 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 MALP21145 153 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 GKP32189 559 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 GTF2F1P35269 517 aaKnown RBP eCLIP0.73□□□□□ -2.29
VPS35-212ENST00000640313 PDE6CP51160 858 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 SCAND1P57086 179 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 CFHR3Q02985 330 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 EEF1A2Q05639 463 aaKnown RBP0.73□□□□□ -2.29
VPS35-212ENST00000640313 CRYZQ08257 329 aaKnown RBP0.73□□□□□ -2.29
VPS35-212ENST00000640313 Q0VFX4 171 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 FAPQ12884 760 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 SNAPC2Q13487 334 aa0.73□□□□□ -2.29
VPS35-212ENST00000640313 BMS1Q14692 1282 aaKnown RBP0.73□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms