RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-223ENST00000637823 RABGGTBP53611 331 aa12.34□□□□□ -0.43
CLN6-223ENST00000637823 RWDD2BP57060 319 aa12.34□□□□□ -0.43
CLN6-223ENST00000637823 DAOAP59103 153 aa12.34□□□□□ -0.43
CLN6-223ENST00000637823 YWHAZP63104 245 aaKnown RBP12.34□□□□□ -0.43
CLN6-223ENST00000637823 CREMQ03060 361 aa12.34□□□□□ -0.43
CLN6-223ENST00000637823 ADCY1Q08828 1119 aa12.34□□□□□ -0.43
CLN6-223ENST00000637823 TAF5Q15542 800 aa12.34□□□□□ -0.43
CLN6-223ENST00000637823 CLUL1Q15846 466 aa12.34□□□□□ -0.43
CLN6-223ENST00000637823 CCDC181Q5TID7 509 aa12.34□□□□□ -0.43
CLN6-223ENST00000637823 RNF19BQ6ZMZ0 732 aa12.34□□□□□ -0.43
CLN6-223ENST00000637823 GPRIN1Q7Z2K8 1008 aa12.34□□□□□ -0.43
CLN6-223ENST00000637823 CPNE8Q86YQ8 564 aa12.34□□□□□ -0.43
CLN6-223ENST00000637823 SCN4BQ8IWT1 228 aa12.34□□□□□ -0.43
CLN6-223ENST00000637823 VPS52Q8N1B4 723 aa12.34□□□□□ -0.43
CLN6-223ENST00000637823 PIWIL1Q96J94 861 aaKnown RBP12.34□□□□□ -0.43
CLN6-223ENST00000637823 CAPZA3Q96KX2 299 aa12.34□□□□□ -0.43
CLN6-223ENST00000637823 PSMB7Q99436 277 aa12.34□□□□□ -0.43
CLN6-223ENST00000637823 CLSTN3Q9BQT9 956 aa12.34□□□□□ -0.43
CLN6-223ENST00000637823 DDX23Q9BUQ8 820 aaKnown RBP12.34□□□□□ -0.43
CLN6-223ENST00000637823 CARD6Q9BX69 1037 aa12.34□□□□□ -0.43
CLN6-223ENST00000637823 ULBP1Q9BZM6 244 aa12.34□□□□□ -0.43
CLN6-223ENST00000637823 CARD9Q9H257 536 aa12.34□□□□□ -0.43
CLN6-223ENST00000637823 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.34□□□□□ -0.43
CLN6-223ENST00000637823 MRPL17Q9NRX2 175 aaKnown RBP12.34□□□□□ -0.43
CLN6-223ENST00000637823 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.34□□□□□ -0.43
CLN6-223ENST00000637823 FNIP2Q9P278 1114 aa12.34□□□□□ -0.43
CLN6-223ENST00000637823 HSFX1Q9UBD0 423 aa12.34□□□□□ -0.43
CLN6-223ENST00000637823 USTQ9Y2C2 406 aa12.34□□□□□ -0.43
CLN6-223ENST00000637823 RWDD3Q9Y3V2 267 aa12.34□□□□□ -0.43
CLN6-223ENST00000637823 USP3Q9Y6I4 520 aa12.34□□□□□ -0.43
CLN6-223ENST00000637823 C2CD2LO14523 706 aa12.33□□□□□ -0.44
CLN6-223ENST00000637823 ADAM12O43184 909 aa12.33□□□□□ -0.44
CLN6-223ENST00000637823 CEP104O60308 925 aa12.33□□□□□ -0.44
CLN6-223ENST00000637823 DAB1O75553 588 aa12.33□□□□□ -0.44
CLN6-223ENST00000637823 VNN2O95498 520 aa12.33□□□□□ -0.44
CLN6-223ENST00000637823 USP17L7P0C7H9 530 aa12.33□□□□□ -0.44
CLN6-223ENST00000637823 HAPLN1P10915 354 aaPredicted RBP12.33□□□□□ -0.44
CLN6-223ENST00000637823 SDC4P31431 198 aa12.33□□□□□ -0.44
CLN6-223ENST00000637823 NOS2P35228 1153 aa12.33□□□□□ -0.44
CLN6-223ENST00000637823 PCK1P35558 622 aa12.33□□□□□ -0.44
CLN6-223ENST00000637823 FLT3P36888 993 aa12.33□□□□□ -0.44
CLN6-223ENST00000637823 MATKP42679 507 aa12.33□□□□□ -0.44
CLN6-223ENST00000637823 SSR1P43307 286 aaKnown RBP12.33□□□□□ -0.44
CLN6-223ENST00000637823 TERF1P54274 439 aa12.33□□□□□ -0.44
CLN6-223ENST00000637823 TAS2R40P59535 323 aa12.33□□□□□ -0.44
CLN6-223ENST00000637823 RPL10AP62906 217 aaKnown RBP12.33□□□□□ -0.44
CLN6-223ENST00000637823 TUBB4BP68371 445 aa12.33□□□□□ -0.44
CLN6-223ENST00000637823 ROR1Q01973 937 aa12.33□□□□□ -0.44
CLN6-223ENST00000637823 HADHQ16836 314 aaKnown RBP12.33□□□□□ -0.44
CLN6-223ENST00000637823 CCDC14Q49A88 953 aa12.33□□□□□ -0.44
CLN6-223ENST00000637823 TPGS2Q68CL5 300 aa12.33□□□□□ -0.44
CLN6-223ENST00000637823 TRNP1Q6NT89 227 aa12.33□□□□□ -0.44
CLN6-223ENST00000637823 ZNF572Q7Z3I7 529 aaPredicted RBP12.33□□□□□ -0.44
CLN6-223ENST00000637823 NUP93Q8N1F7 819 aa12.33□□□□□ -0.44
CLN6-223ENST00000637823 RASGEF1CQ8N431 466 aa12.33□□□□□ -0.44
CLN6-223ENST00000637823 KLHL23Q8NBE8 558 aa12.33□□□□□ -0.44
CLN6-223ENST00000637823 ATAD1Q8NBU5 361 aa12.33□□□□□ -0.44
CLN6-223ENST00000637823 MYRIPQ8NFW9 859 aa12.33□□□□□ -0.44
CLN6-223ENST00000637823 ZNF461Q8TAF7 563 aa12.33□□□□□ -0.44
CLN6-223ENST00000637823 ACTRT1Q8TDG2 376 aa12.33□□□□□ -0.44
CLN6-223ENST00000637823 ALG3Q92685 438 aa12.33□□□□□ -0.44
CLN6-223ENST00000637823 KRT35Q92764 455 aa12.33□□□□□ -0.44
CLN6-223ENST00000637823 RPGRIP1Q96KN7 1286 aa12.33□□□□□ -0.44
CLN6-223ENST00000637823 SPATA17Q96L03 361 aa12.33□□□□□ -0.44
CLN6-223ENST00000637823 CEP295NLQ96MC4 621 aa12.33□□□□□ -0.44
CLN6-223ENST00000637823 PGLYRP2Q96PD5 576 aa12.33□□□□□ -0.44
CLN6-223ENST00000637823 TRIM62Q9BVG3 475 aa12.33□□□□□ -0.44
CLN6-223ENST00000637823 PLVAPQ9BX97 442 aa12.33□□□□□ -0.44
CLN6-223ENST00000637823 FBXO44Q9H4M3 255 aa12.33□□□□□ -0.44
CLN6-223ENST00000637823 COMMD8Q9NX08 183 aa12.33□□□□□ -0.44
CLN6-223ENST00000637823 TTC7AQ9ULT0 858 aaPredicted RBP12.33□□□□□ -0.44
CLN6-223ENST00000637823 MAFFQ9ULX9 164 aa12.33□□□□□ -0.44
CLN6-223ENST00000637823 LZTS1Q9Y250 596 aa12.33□□□□□ -0.44
CLN6-223ENST00000637823 WDR27A2RRH5 827 aa12.32□□□□□ -0.44
CLN6-223ENST00000637823 CTAGE15A4D2H0 777 aa12.32□□□□□ -0.44
CLN6-223ENST00000637823 LILRB3O75022 631 aa12.32□□□□□ -0.44
CLN6-223ENST00000637823 LRCH4O75427 683 aa12.32□□□□□ -0.44
CLN6-223ENST00000637823 ABLIM3O94929 683 aa12.32□□□□□ -0.44
CLN6-223ENST00000637823 RTN3O95197 1032 aaPredicted RBP12.32□□□□□ -0.44
CLN6-223ENST00000637823 LTFP02788 710 aa12.32□□□□□ -0.44
CLN6-223ENST00000637823 KRT7P08729 469 aa12.32□□□□□ -0.44
CLN6-223ENST00000637823 CTAGE8P0CG41 777 aa12.32□□□□□ -0.44
CLN6-223ENST00000637823 CTSAP10619 480 aa12.32□□□□□ -0.44
CLN6-223ENST00000637823 RPL17P18621 184 aaKnown RBP12.32□□□□□ -0.44
CLN6-223ENST00000637823 MAGEA10P43363 369 aaPredicted RBP12.32□□□□□ -0.44
CLN6-223ENST00000637823 MARCKSL1P49006 195 aa12.32□□□□□ -0.44
CLN6-223ENST00000637823 TUFMP49411 452 aaKnown RBP12.32□□□□□ -0.44
CLN6-223ENST00000637823 ITIH3Q06033 890 aa12.32□□□□□ -0.44
CLN6-223ENST00000637823 RAB33AQ14088 237 aa12.32□□□□□ -0.44
CLN6-223ENST00000637823 DDR2Q16832 855 aa12.32□□□□□ -0.44
CLN6-223ENST00000637823 DCAF12L1Q5VU92 463 aa12.32□□□□□ -0.44
CLN6-223ENST00000637823 BEND5Q7L4P6 421 aa12.32□□□□□ -0.44
CLN6-223ENST00000637823 POLNQ7Z5Q5 900 aa12.32□□□□□ -0.44
CLN6-223ENST00000637823 CTAGE6Q86UF2 777 aa12.32□□□□□ -0.44
CLN6-223ENST00000637823 CTAGE4Q8IX94 777 aa12.32□□□□□ -0.44
CLN6-223ENST00000637823 KATNAL2Q8IYT4 538 aa12.32□□□□□ -0.44
CLN6-223ENST00000637823 RCOR2Q8IZ40 523 aa12.32□□□□□ -0.44
CLN6-223ENST00000637823 DEFB106AQ8N104 65 aa12.32□□□□□ -0.44
CLN6-223ENST00000637823 ARFGAP1Q8N6T3 406 aa12.32□□□□□ -0.44
CLN6-223ENST00000637823 SCAMP5Q8TAC9 235 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms