RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 TADA2BQ86TJ2 420 aa19.29■□□□□ 0.68
CLN3-259ENST00000637551 ARHGAP18Q8N392 663 aa19.29■□□□□ 0.68
CLN3-259ENST00000637551 STK32AQ8WU08 396 aa19.29■□□□□ 0.68
CLN3-259ENST00000637551 FBXO32Q969P5 355 aa19.29■□□□□ 0.68
CLN3-259ENST00000637551 SHDQ96IW2 340 aa19.29■□□□□ 0.68
CLN3-259ENST00000637551 ERGIC2Q96RQ1 377 aa19.29■□□□□ 0.68
CLN3-259ENST00000637551 HSD3B7Q9H2F3 369 aa19.29■□□□□ 0.68
CLN3-259ENST00000637551 THG1LQ9NWX6 298 aaKnown RBP19.29■□□□□ 0.68
CLN3-259ENST00000637551 TMEM221A6NGB7 291 aa19.28■□□□□ 0.68
CLN3-259ENST00000637551 HEPACAM2A8MVW5 462 aa19.28■□□□□ 0.68
CLN3-259ENST00000637551 M0R296 226 aa19.28■□□□□ 0.68
CLN3-259ENST00000637551 NRG2O14511 850 aaPredicted RBP19.28■□□□□ 0.68
CLN3-259ENST00000637551 BEST1O76090 585 aa19.28■□□□□ 0.68
CLN3-259ENST00000637551 CD19P15391 556 aa19.28■□□□□ 0.68
CLN3-259ENST00000637551 GJA1P17302 382 aa19.28■□□□□ 0.68
CLN3-259ENST00000637551 STXBP5Q5T5C0 1151 aa19.28■□□□□ 0.68
CLN3-259ENST00000637551 DPY19L2P1Q6NXN4 242 aa19.28■□□□□ 0.68
CLN3-259ENST00000637551 VITQ6UXI7 678 aa19.28■□□□□ 0.68
CLN3-259ENST00000637551 FMNL3Q8IVF7 1028 aa19.28■□□□□ 0.68
CLN3-259ENST00000637551 AOPEPQ8N6M6 819 aa19.28■□□□□ 0.68
CLN3-259ENST00000637551 MAB21L3Q8N8X9 362 aa19.28■□□□□ 0.68
CLN3-259ENST00000637551 BPIFB1Q8TDL5 484 aa19.28■□□□□ 0.68
CLN3-259ENST00000637551 RSAD2Q8WXG1 361 aa19.28■□□□□ 0.68
CLN3-259ENST00000637551 HSFY1Q96LI6 401 aa19.28■□□□□ 0.68
CLN3-259ENST00000637551 KXD1Q9BQD3 176 aa19.28■□□□□ 0.68
CLN3-259ENST00000637551 CLIC5Q9NZA1 410 aa19.28■□□□□ 0.68
CLN3-259ENST00000637551 MYO15AQ9UKN7 3530 aa19.28■□□□□ 0.68
CLN3-259ENST00000637551 SYCE3A1L190 88 aa19.27■□□□□ 0.68
CLN3-259ENST00000637551 BECN2A8MW95 431 aa19.27■□□□□ 0.68
CLN3-259ENST00000637551 UCHL3P15374 230 aa19.27■□□□□ 0.68
CLN3-259ENST00000637551 CDK11BP21127 795 aaKnown RBP19.27■□□□□ 0.68
CLN3-259ENST00000637551 COPB1P53618 953 aaKnown RBP19.27■□□□□ 0.68
CLN3-259ENST00000637551 TPM4P67936 248 aa19.27■□□□□ 0.68
CLN3-259ENST00000637551 USP4Q13107 963 aa19.27■□□□□ 0.68
CLN3-259ENST00000637551 ZSCAN23Q3MJ62 389 aa19.27■□□□□ 0.68
CLN3-259ENST00000637551 KLHDC7AQ5VTJ3 777 aa19.27■□□□□ 0.68
CLN3-259ENST00000637551 TXNDC8Q6A555 127 aa19.27■□□□□ 0.68
CLN3-259ENST00000637551 PM20D1Q6GTS8 502 aa19.27■□□□□ 0.68
CLN3-259ENST00000637551 TTC30AQ86WT1 665 aa19.27■□□□□ 0.68
CLN3-259ENST00000637551 DHX40Q8IX18 779 aaKnown RBP19.27■□□□□ 0.68
CLN3-259ENST00000637551 KAT5Q92993 513 aa19.27■□□□□ 0.68
CLN3-259ENST00000637551 NAA15Q9BXJ9 866 aaKnown RBP19.27■□□□□ 0.68
CLN3-259ENST00000637551 KMT2EQ8IZD2 1858 aa19.26■□□□□ 0.67
CLN3-259ENST00000637551 ARNTLO00327 626 aa19.26■□□□□ 0.67
CLN3-259ENST00000637551 PES1O00541 588 aaKnown RBP19.26■□□□□ 0.67
CLN3-259ENST00000637551 CKMP06732 381 aa19.26■□□□□ 0.67
CLN3-259ENST00000637551 HDCP19113 662 aa19.26■□□□□ 0.67
CLN3-259ENST00000637551 RPL34P49207 117 aaKnown RBP19.26■□□□□ 0.67
CLN3-259ENST00000637551 KCNMA1Q12791 1236 aa19.26■□□□□ 0.67
CLN3-259ENST00000637551 IQCB1Q15051 598 aa19.26■□□□□ 0.67
CLN3-259ENST00000637551 GOLGA7BQ2TAP0 167 aa19.26■□□□□ 0.67
CLN3-259ENST00000637551 HECTD3Q5T447 861 aa19.26■□□□□ 0.67
CLN3-259ENST00000637551 APTXQ7Z2E3 356 aaKnown RBP19.26■□□□□ 0.67
CLN3-259ENST00000637551 PIGZQ86VD9 579 aa19.26■□□□□ 0.67
CLN3-259ENST00000637551 SUGP1Q8IWZ8 645 aaKnown RBP19.26■□□□□ 0.67
CLN3-259ENST00000637551 YAF2Q8IY57 180 aa19.26■□□□□ 0.67
CLN3-259ENST00000637551 FAM71AQ8IYT1 594 aa19.26■□□□□ 0.67
CLN3-259ENST00000637551 SCAMP5Q8TAC9 235 aa19.26■□□□□ 0.67
CLN3-259ENST00000637551 SLC35F5Q8WV83 523 aa19.26■□□□□ 0.67
CLN3-259ENST00000637551 USP13Q92995 863 aaPredicted RBP19.26■□□□□ 0.67
CLN3-259ENST00000637551 OSBPL6Q9BZF3 934 aa19.26■□□□□ 0.67
CLN3-259ENST00000637551 BRD9Q9H8M2 597 aa19.26■□□□□ 0.67
CLN3-259ENST00000637551 CNGB3Q9NQW8 809 aa19.26■□□□□ 0.67
CLN3-259ENST00000637551 ARHGEF3Q9NR81 526 aa19.26■□□□□ 0.67
CLN3-259ENST00000637551 TAB2Q9NYJ8 693 aa19.26■□□□□ 0.67
CLN3-259ENST00000637551 DNAJC12Q9UKB3 198 aa19.26■□□□□ 0.67
CLN3-259ENST00000637551 PCDHGC3Q9UN70 934 aa19.26■□□□□ 0.67
CLN3-259ENST00000637551 ZNF263O14978 683 aa19.25■□□□□ 0.67
CLN3-259ENST00000637551 SART1O43290 800 aaKnown RBP19.25■□□□□ 0.67
CLN3-259ENST00000637551 PRAMEF12O95522 483 aa19.25■□□□□ 0.67
CLN3-259ENST00000637551 KRT5P13647 590 aa19.25■□□□□ 0.67
CLN3-259ENST00000637551 CLCN5P51795 746 aa19.25■□□□□ 0.67
CLN3-259ENST00000637551 CDR1P51861 262 aa19.25■□□□□ 0.67
CLN3-259ENST00000637551 STARD6P59095 220 aa19.25■□□□□ 0.67
CLN3-259ENST00000637551 GPC5P78333 572 aa19.25■□□□□ 0.67
CLN3-259ENST00000637551 PTK2Q05397 1052 aa19.25■□□□□ 0.67
CLN3-259ENST00000637551 PDGFRLQ15198 375 aa19.25■□□□□ 0.67
CLN3-259ENST00000637551 ZNF77Q15935 545 aa19.25■□□□□ 0.67
CLN3-259ENST00000637551 HSP90AA4PQ58FG1 418 aa19.25■□□□□ 0.67
CLN3-259ENST00000637551 FBXL6Q8N531 539 aa19.25■□□□□ 0.67
CLN3-259ENST00000637551 IRGQQ8WZA9 623 aa19.25■□□□□ 0.67
CLN3-259ENST00000637551 TFAP2BQ92481 460 aa19.25■□□□□ 0.67
CLN3-259ENST00000637551 RPP25Q9BUL9 199 aaKnown RBP19.25■□□□□ 0.67
CLN3-259ENST00000637551 DDX23Q9BUQ8 820 aaKnown RBP19.25■□□□□ 0.67
CLN3-259ENST00000637551 TRIM62Q9BVG3 475 aa19.25■□□□□ 0.67
CLN3-259ENST00000637551 STK33Q9BYT3 514 aa19.25■□□□□ 0.67
CLN3-259ENST00000637551 FAM86C1Q9NVL1 165 aa19.25■□□□□ 0.67
CLN3-259ENST00000637551 FBXL21Q9UKT6 434 aa19.25■□□□□ 0.67
CLN3-259ENST00000637551 SIK3Q9Y2K2 1263 aa19.25■□□□□ 0.67
CLN3-259ENST00000637551 RNF225M0QZC1 329 aaPredicted RBP19.24■□□□□ 0.67
CLN3-259ENST00000637551 FBXO21O94952 628 aa19.24■□□□□ 0.67
CLN3-259ENST00000637551 GNA15P30679 374 aa19.24■□□□□ 0.67
CLN3-259ENST00000637551 VIPR2P41587 438 aa19.24■□□□□ 0.67
CLN3-259ENST00000637551 ACADSBP45954 432 aa19.24■□□□□ 0.67
CLN3-259ENST00000637551 PDE4CQ08493 712 aa19.24■□□□□ 0.67
CLN3-259ENST00000637551 FILIP1LQ4L180 1135 aa19.24■□□□□ 0.67
CLN3-259ENST00000637551 ZNF606Q8WXB4 792 aa19.24■□□□□ 0.67
CLN3-259ENST00000637551 OTUB2Q96DC9 234 aa19.24■□□□□ 0.67
CLN3-259ENST00000637551 NELL2Q99435 816 aa19.24■□□□□ 0.67
CLN3-259ENST00000637551 PLA2G2FQ9BZM2 168 aa19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms