RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 BOLA3Q53S33 107 aa9.21□□□□□ -0.94
VCL-206ENST00000623461 NAPEPLDQ6IQ20 393 aa9.21□□□□□ -0.94
VCL-206ENST00000623461 CAMK1DQ8IU85 385 aa9.21□□□□□ -0.94
VCL-206ENST00000623461 PYDC1Q8WXC3 89 aa9.21□□□□□ -0.94
VCL-206ENST00000623461 PNPLA3Q9NST1 481 aa9.21□□□□□ -0.94
VCL-206ENST00000623461 COMMD8Q9NX08 183 aa9.21□□□□□ -0.94
VCL-206ENST00000623461 SLC39A10Q9ULF5 831 aa9.21□□□□□ -0.94
VCL-206ENST00000623461 SLC8A2Q9UPR5 921 aa9.21□□□□□ -0.94
VCL-206ENST00000623461 WDR37Q9Y2I8 494 aa9.21□□□□□ -0.94
VCL-206ENST00000623461 LOC102724428A0A0B4J2F2 783 aa9.21□□□□□ -0.94
VCL-206ENST00000623461 MATN2O00339 956 aa9.21□□□□□ -0.94
VCL-206ENST00000623461 SIK1P57059 783 aa9.21□□□□□ -0.94
VCL-206ENST00000623461 SNAP25P60880 206 aa9.21□□□□□ -0.94
VCL-206ENST00000623461 EPS8Q12929 822 aa9.21□□□□□ -0.94
VCL-206ENST00000623461 NCOA4Q13772 614 aa9.21□□□□□ -0.94
VCL-206ENST00000623461 KLHL12Q53G59 568 aa9.21□□□□□ -0.94
VCL-206ENST00000623461 RIPOR1Q6ZS17 1223 aa9.21□□□□□ -0.94
VCL-206ENST00000623461 CENPLQ8N0S6 344 aaPredicted RBP9.21□□□□□ -0.94
VCL-206ENST00000623461 OSBPL11Q9BXB4 747 aa9.21□□□□□ -0.94
VCL-206ENST00000623461 WDR12Q9GZL7 423 aaKnown RBP9.21□□□□□ -0.94
VCL-206ENST00000623461 AGPAT3Q9NRZ7 376 aa9.21□□□□□ -0.94
VCL-206ENST00000623461 TOPORSQ9NS56 1045 aaPredicted RBP9.21□□□□□ -0.94
VCL-206ENST00000623461 DLG4P78352 724 aa9.2□□□□□ -0.94
VCL-206ENST00000623461 FOLH1Q04609 750 aa9.2□□□□□ -0.94
VCL-206ENST00000623461 NAB1Q13506 487 aa9.2□□□□□ -0.94
VCL-206ENST00000623461 ACVR2BQ13705 512 aa9.2□□□□□ -0.94
VCL-206ENST00000623461 TRIP4Q15650 581 aaPredicted RBP9.2□□□□□ -0.94
VCL-206ENST00000623461 TAB1Q15750 504 aa9.2□□□□□ -0.94
VCL-206ENST00000623461 ANO4Q32M45 955 aa9.2□□□□□ -0.94
VCL-206ENST00000623461 SPOCD1Q6ZMY3 1216 aa9.2□□□□□ -0.94
VCL-206ENST00000623461 SH3RF1Q7Z6J0 888 aa9.2□□□□□ -0.94
VCL-206ENST00000623461 NAT14Q8WUY8 206 aa9.2□□□□□ -0.94
VCL-206ENST00000623461 HUS1O60921 280 aa9.2□□□□□ -0.94
VCL-206ENST00000623461 KATNA1O75449 491 aa9.2□□□□□ -0.94
VCL-206ENST00000623461 SMNDC1O75940 238 aaKnown RBP eCLIP9.2□□□□□ -0.94
VCL-206ENST00000623461 FOXD4Q12950 439 aaPredicted RBP9.2□□□□□ -0.94
VCL-206ENST00000623461 PDK2Q15119 407 aa9.2□□□□□ -0.94
VCL-206ENST00000623461 SHCBP1Q8NEM2 672 aa9.2□□□□□ -0.94
VCL-206ENST00000623461 NLRP4Q96MN2 994 aa9.2□□□□□ -0.94
VCL-206ENST00000623461 FAM217BQ9NTX9 383 aaPredicted RBP9.2□□□□□ -0.94
VCL-206ENST00000623461 MEI4A8MW99 385 aa9.2□□□□□ -0.94
VCL-206ENST00000623461 TRDMT1O14717 391 aaKnown RBP9.2□□□□□ -0.94
VCL-206ENST00000623461 LDLRP01130 860 aa9.2□□□□□ -0.94
VCL-206ENST00000623461 TFRCP02786 760 aaKnown RBP9.2□□□□□ -0.94
VCL-206ENST00000623461 SSTR3P32745 418 aaPredicted RBP9.2□□□□□ -0.94
VCL-206ENST00000623461 PRKG1Q13976 671 aa9.2□□□□□ -0.94
VCL-206ENST00000623461 COG2Q14746 738 aa9.2□□□□□ -0.94
VCL-206ENST00000623461 FAM98BQ52LJ0 330 aaKnown RBP9.2□□□□□ -0.94
VCL-206ENST00000623461 SPANXN2Q5MJ10 180 aa9.2□□□□□ -0.94
VCL-206ENST00000623461 SAMD4BQ5PRF9 694 aaKnown RBP9.2□□□□□ -0.94
VCL-206ENST00000623461 UNC45BQ8IWX7 931 aa9.2□□□□□ -0.94
VCL-206ENST00000623461 TFB1MQ8WVM0 346 aaKnown RBP9.2□□□□□ -0.94
VCL-206ENST00000623461 EPB41L4AQ9HCS5 686 aaPredicted RBP9.2□□□□□ -0.94
VCL-206ENST00000623461 DDX3XO00571 662 aaKnown RBP eCLIP9.2□□□□□ -0.943e-26■□□□□ 8.4
VCL-206ENST00000623461 PPEF1O14829 653 aaPredicted RBP9.2□□□□□ -0.94
VCL-206ENST00000623461 CYTH3O43739 400 aa9.2□□□□□ -0.94
VCL-206ENST00000623461 HLA-DRAP01903 254 aa9.2□□□□□ -0.94
VCL-206ENST00000623461 SHBGP04278 402 aa9.2□□□□□ -0.94
VCL-206ENST00000623461 PRDX5P30044 214 aa9.2□□□□□ -0.94
VCL-206ENST00000623461 NFYCQ13952 458 aa9.2□□□□□ -0.94
VCL-206ENST00000623461 ILDR1Q86SU0 546 aaPredicted RBP9.2□□□□□ -0.94
VCL-206ENST00000623461 ZNF669Q96BR6 464 aaPredicted RBP9.2□□□□□ -0.94
VCL-206ENST00000623461 COA1Q9GZY4 146 aa9.2□□□□□ -0.94
VCL-206ENST00000623461 COPS7BQ9H9Q2 264 aaPredicted RBP9.2□□□□□ -0.94
VCL-206ENST00000623461 SP110Q9HB58 689 aa9.2□□□□□ -0.94
VCL-206ENST00000623461 TMEM161AQ9NX61 479 aa9.2□□□□□ -0.94
VCL-206ENST00000623461 FNDC3AQ9Y2H6 1198 aaKnown RBP9.2□□□□□ -0.94
VCL-206ENST00000623461 IPPQ9Y573 584 aa9.2□□□□□ -0.94
VCL-206ENST00000623461 CYP11B2P19099 503 aa9.2□□□□□ -0.94
VCL-206ENST00000623461 ACAT1P24752 427 aaKnown RBP9.2□□□□□ -0.94
VCL-206ENST00000623461 LPIN1Q14693 890 aa9.2□□□□□ -0.94
VCL-206ENST00000623461 KCNT1Q5JUK3 1230 aa9.2□□□□□ -0.94
VCL-206ENST00000623461 KCTD14Q9BQ13 255 aaPredicted RBP9.2□□□□□ -0.94
VCL-206ENST00000623461 ZNF518BQ9C0D4 1074 aa9.2□□□□□ -0.94
VCL-206ENST00000623461 LRRC4BQ9NT99 713 aa9.2□□□□□ -0.94
VCL-206ENST00000623461 RAD51BO15315 384 aa9.2□□□□□ -0.94
VCL-206ENST00000623461 PGM3O95394 542 aa9.2□□□□□ -0.94
VCL-206ENST00000623461 PSMB9P28065 219 aa9.2□□□□□ -0.94
VCL-206ENST00000623461 RPA3P35244 121 aaPredicted RBP9.2□□□□□ -0.94
VCL-206ENST00000623461 GRAPQ13588 217 aa9.2□□□□□ -0.94
VCL-206ENST00000623461 KRT73Q86Y46 540 aa9.2□□□□□ -0.94
VCL-206ENST00000623461 GRAPLQ8TC17 118 aaPredicted RBP9.2□□□□□ -0.94
VCL-206ENST00000623461 KAT2BQ92831 832 aa9.2□□□□□ -0.94
VCL-206ENST00000623461 MED15Q96RN5 788 aa9.2□□□□□ -0.94
VCL-206ENST00000623461 DUSP9Q99956 384 aaKnown RBP9.2□□□□□ -0.94
VCL-206ENST00000623461 ZNF302Q9NR11 478 aa9.2□□□□□ -0.94
VCL-206ENST00000623461 INTS13Q9NVM9 706 aa9.2□□□□□ -0.94
VCL-206ENST00000623461 RUVBL2Q9Y230 463 aaKnown RBP9.2□□□□□ -0.94
VCL-206ENST00000623461 SNTNA6NMZ2 147 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 LSM1O15116 133 aaKnown RBP9.19□□□□□ -0.94
VCL-206ENST00000623461 TSC22D2O75157 780 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 PROCP04070 461 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 CYP11B1P15538 503 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 SERPINH1P50454 418 aaKnown RBP9.19□□□□□ -0.94
VCL-206ENST00000623461 ILF2Q12905 390 aaKnown RBP9.19□□□□□ -0.94
VCL-206ENST00000623461 DIS3LQ8TF46 1054 aaKnown RBP9.19□□□□□ -0.94
VCL-206ENST00000623461 SRPK1Q96SB4 655 aaKnown RBP9.19□□□□□ -0.94
VCL-206ENST00000623461 TMEM165Q9HC07 324 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 NCKIPSDQ9NZQ3 722 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 ARMCX1Q9P291 453 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms